Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013538

Physical Location & Seq

Genomic Coordinates Reverse (-)

5440468 .. 5442626

Gene Structure 2159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAGAGGGCTTAAAGAAGCACGTCATGACCACCGCGACTAGGAGGGTGGCCTCCATCGCCAACCACCTCATTCCGGCCCATTTATCTCCCGGCTCCGCCGCAATTTCTCTCTCCAACGCCTCCATGAACGACAGCTACCACCGCACCCACGGCGAGGTCTCGACTCACCGAGTTGTTTGGGAAAATGCTCGCGACGTTTCCGGCGACGAATTCATTGATATTATATACGAGAAAGCCATCGGCGAAGCCATTGCAAAGGTTACGATTAATAGGCCGGAGAGAAGAAATGCGTTCCGGCCGCAGACTGTGAAGGAGCTGATTCGCGCGTTTAATGATGCCAGGGACGACGGCTCCATAGGCGTCGTCATTCTTACCGGGAAGGGAACCAAAGCATTCTGCAGTGGCGGTGATCAGGCTTTGAGAGGAAAATATGGTTATTCTGATTACGATGATTTTGGCCGTCTTAATGTGTTAGATTTGCAGGTCCAGATTCGACGTCTTCCAAAGCCAGTAATAGCCATGGTGGCTGGTTATGCTGTTGGGGGAGGACATGTGTTACACTTGGTCTGTGATCTAACCATTGCGGCAGACAATGCTATTTTTGGTCAGACTGGTCCTAAGGTTGGAAGCTTTGACGCTGGTTATGGGAGTTCCATCATGTCCCGTTTGGTCGGGCCTAAAAAAGCACGAGAAATGTGGTTTATGGCAAGGTTTTACACAGCTGCTGAAGCAGAGAAAATGGGACTTGTTAACACTGTTGTACCACTGGAGACTTTAGAGCAAGAAACGGTTAAATGGTGTCGAGAAATGCTAAGAAACAGCCCAACCGCGCTTCGGGTGCTGAAGTCTGCTCTTAATGCAGTTGACGACGGTCATGCTGGACTGCAGCAACTTGCTGGAGATGCCACGCTCTTATTCTATGGCACTGAGGAAGGTAACGAGGGGAAGACGGCTTATATGCAGCGCAGACGTCCAGATTTCTCAAAGTTTCCCAGGAGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008935 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016829 GO:0016830 GO:0016833 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

ECH_1

Protein Analysis

336

Amino Acids

36.73

Weight (kDa)

9.14

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	82 - 329	1.2e-74	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	86 - 262	1.5e-20	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60550
fragaria_vesca	FvH4_4g34130 FvH4_4g34130 FvH4_4g34130
malus_domestica	MD13G1094000.v1.1 MD16G1095300.v1.1
prunus_persica	Prupe.1G251300_v2.0.a1
pyrus_communis	pycom13g08190
rosa_chinensis	RchiOBHm_Chr4g0443641
rosa_laevigata	RLG00000005906
rosa_multiflora	Rmu_sc0001118.1_g000011 Rmu_sc0033917.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384190
rosa_samantha	Rh4AG405800 Rh4BG416800 Rh4CG431300 Rh4DG412500
rosa_wichuraiana	Rw4G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	502, 976
Acc36I	ACCTGC	1 cut(s)	475
AccII	CGCG	5 cut(s)	38, 195, 327, 329, 833
AciI	CCGC	8 cut(s)	36, 99, 102, 145, 302, 408, 587, 831
AcoI	YGGCCR	2 cut(s)	299, 460
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	2 cut(s)	750, 866
AcyI	GRCGYC	3 cut(s)	363, 499, 973
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	5 cut(s)	42, 76, 157, 626, 837
AflIII	ACRYGT	1 cut(s)	553
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	341, 995
AluBI	AGCT	4 cut(s)	138, 319, 633, 725
AluI	AGCT	4 cut(s)	138, 319, 633, 725
Alw26I	GTCTC	3 cut(s)	166, 767, 994
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	6 cut(s)	51, 78, 275, 299, 460, 677
ApeKI	GCWGC	3 cut(s)	725, 889, 964
ApoI	RAATTY	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	270
AspLEI	GCGC	3 cut(s)	329, 835, 969
AspS9I	GGNCC	4 cut(s)	79, 487, 617, 677
AsuC2I	CCSGG	2 cut(s)	93, 379
AsuHPI	GGTGA	2 cut(s)	161, 422
AvaII	GGWCC	2 cut(s)	487, 617
AxyI	CCTNAGG	1 cut(s)	621
BaeI	ACNNNNGTAYC	2 cut(s)	747, 780
BauI	CACGAG	1 cut(s)	690
BbsI	GAAGAC	2 cut(s)	494, 956
BbvI	GCAGC	3 cut(s)	712, 901, 976
BccI	CCATC	3 cut(s)	65, 248, 665
BceAI	ACGGC	4 cut(s)	169, 367, 447, 969
BcgI	CGANNNNNNTGC	4 cut(s)	236, 270, 860, 894
BciT130I	CCWGG	2 cut(s)	343, 997
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	93, 379
BcoDI	GTCTC	3 cut(s)	166, 767, 994
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	400, 887
BfuAI	ACCTGC	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	527
BisI	GCNGC	6 cut(s)	102, 302, 588, 726, 890, 965
BlsI	GCNGC	6 cut(s)	103, 303, 589, 727, 891, 966
Bme1390I	CCNGG	4 cut(s)	93, 343, 379, 997
Bme18I	GGWCC	2 cut(s)	487, 617
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	4 cut(s)	79, 487, 617, 677
BmiI	GGNNCC	3 cut(s)	97, 355, 388
BmrFI	CCNGG	4 cut(s)	93, 343, 379, 997
BmsI	GCATC	2 cut(s)	328, 895
BoxI	GACNNNNGTC	1 cut(s)	873
BpiI	GAAGAC	2 cut(s)	494, 956
BpmI	CTGGAG	2 cut(s)	791, 921
BpuMI	CCSGG	2 cut(s)	93, 379
BsaHI	GRCGYC	3 cut(s)	363, 499, 973
BsaI	GGTCTC	2 cut(s)	166, 994
BsaJI	CCNNGG	4 cut(s)	151, 342, 522, 995
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 540, 570
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 76, 157, 626, 837
Bse1I	ACTGG	3 cut(s)	512, 619, 774
Bse21I	CCTNAGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	252, 582
BseBI	CCWGG	2 cut(s)	343, 997
BseDI	CCNNGG	4 cut(s)	151, 342, 522, 995
BseLI	CCNNNNNNNGG	5 cut(s)	42, 76, 157, 626, 837
BseMI	GCAATG	2 cut(s)	252, 582
BseMII	CTCAG	1 cut(s)	921
BseNI	ACTGG	3 cut(s)	512, 619, 774
BseX3I	CGGCCG	1 cut(s)	299
BseXI	GCAGC	3 cut(s)	712, 901, 976
Bsh1236I	CGCG	5 cut(s)	38, 195, 327, 329, 833
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	6 cut(s)	53, 80, 277, 301, 462, 679
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	6 cut(s)	77, 93, 204, 278, 298, 378
BslFI	GGGAC	3 cut(s)	359, 649, 759
BslI	CCNNNNNNNGG	5 cut(s)	42, 76, 157, 626, 837
BsmAI	GTCTC	3 cut(s)	166, 767, 994
BsmFI	GGGAC	3 cut(s)	359, 649, 759
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	6 cut(s)	53, 80, 277, 301, 462, 679
Bso31I	GGTCTC	2 cut(s)	166, 994
Bsp143I	GATC	2 cut(s)	412, 574
Bsp19I	CCATGG	1 cut(s)	522
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	8 cut(s)	36, 99, 102, 145, 302, 408, 587, 831
BspANI	GGCC	6 cut(s)	53, 80, 277, 301, 462, 679
BspCNI	CTCAG	1 cut(s)	922
BspFNI	CGCG	5 cut(s)	38, 195, 327, 329, 833
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	97, 355, 388
BspMAI	CTGCAG	2 cut(s)	404, 891
BspMI	ACCTGC	1 cut(s)	475
BspTNI	GGTCTC	2 cut(s)	166, 994
BsrDI	GCAATG	2 cut(s)	252, 582
BsrI	ACTGG	3 cut(s)	512, 619, 774
BssECI	CCNNGG	4 cut(s)	151, 342, 522, 995
BssMI	GATC	2 cut(s)	412, 574
BssNI	GRCGYC	3 cut(s)	363, 499, 973
BssSI	CACGAG	1 cut(s)	690
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	343, 997
Bst4CI	ACNGT	4 cut(s)	310, 760, 793, 875
BstACI	GRCGYC	3 cut(s)	363, 499, 973
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	621, 815, 930
BstDSI	CCRYGG	2 cut(s)	151, 522
BstFNI	CGCG	5 cut(s)	38, 195, 327, 329, 833
BstHHI	GCGC	3 cut(s)	329, 835, 969
BstKTI	GATC	2 cut(s)	415, 577
BstMAI	GTCTC	3 cut(s)	166, 767, 994
BstMBI	GATC	2 cut(s)	412, 574
BstMCI	CGRYCG	1 cut(s)	302
BstNI	CCWGG	2 cut(s)	343, 997
BstNSI	RCATGY	1 cut(s)	557
BstPAI	GACNNNNGTC	1 cut(s)	873
BstSCI	CCNGG	4 cut(s)	91, 341, 377, 995
BstSFI	CTRYAG	2 cut(s)	400, 887
BstUI	CGCG	5 cut(s)	38, 195, 327, 329, 833
BstV1I	GCAGC	3 cut(s)	712, 901, 976
BstV2I	GAAGAC	2 cut(s)	494, 956
BstZI	CGGCCG	1 cut(s)	299
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	6 cut(s)	53, 80, 277, 301, 462, 679
BtgI	CCRYGG	2 cut(s)	151, 522
BtgZI	GCGATG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	4 cut(s)	409, 756, 767, 927
BtuMI	TCGCGA	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	728
CciI	TCATGA	1 cut(s)	27
CfoI	GCGC	3 cut(s)	329, 835, 969
Cfr13I	GGNCC	4 cut(s)	79, 487, 617, 677
CseI	GACGC	2 cut(s)	352, 647
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	6 cut(s)	28, 127, 523, 554, 661, 878
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	3 cut(s)	621, 815, 930
DpnI	GATC	2 cut(s)	414, 576
DpnII	GATC	2 cut(s)	412, 574
EaeI	YGGCCR	2 cut(s)	299, 460
EagI	CGGCCG	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	522
Eco31I	GGTCTC	2 cut(s)	166, 994
Eco47I	GGWCC	2 cut(s)	487, 617
Eco52I	CGGCCG	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	750, 866
Eco81I	CCTNAGG	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	341, 995
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	6 cut(s)	31, 130, 526, 557, 664, 881
FaqI	GGGAC	3 cut(s)	359, 649, 759
FatI	CATG	6 cut(s)	27, 126, 522, 553, 660, 877
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	6 cut(s)	102, 302, 588, 726, 890, 965
Fsp4HI	GCNGC	6 cut(s)	102, 302, 588, 726, 890, 965
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	3 cut(s)	328, 834, 968
GluI	GCNGC	6 cut(s)	102, 302, 588, 726, 890, 965
GsuI	CTGGAG	2 cut(s)	791, 921
HaeIII	GGCC	6 cut(s)	53, 80, 277, 301, 462, 679
HapII	CCGG	6 cut(s)	77, 93, 204, 278, 298, 378
HgaI	GACGC	2 cut(s)	352, 647
HhaI	GCGC	3 cut(s)	329, 835, 969
Hin1I	GRCGYC	3 cut(s)	363, 499, 973
Hin1II	CATG	6 cut(s)	31, 130, 526, 557, 664, 881
Hin6I	GCGC	3 cut(s)	327, 833, 967
HinP1I	GCGC	3 cut(s)	327, 833, 967
HincII	GTYRAC	2 cut(s)	754, 868
HindII	GTYRAC	2 cut(s)	754, 868
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	3 cut(s)	166, 322, 493
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	6 cut(s)	77, 93, 204, 278, 298, 378
HphI	GGTGA	2 cut(s)	161, 422
Hpy166II	GTNNAC	2 cut(s)	754, 868
Hpy188I	TCNGA	2 cut(s)	445, 612
Hpy188III	TCNNGA	6 cut(s)	28, 163, 194, 490, 806, 977
Hpy8I	GTNNAC	2 cut(s)	754, 868
Hpy99I	CGWCG	6 cut(s)	200, 212, 353, 368, 501, 875
HpyAV	CCTTC	3 cut(s)	307, 376, 929
HpyCH4III	ACNGT	4 cut(s)	310, 760, 793, 875
HpyCH4IV	ACGT	4 cut(s)	24, 198, 499, 973
HpyCH4V	TGCA	6 cut(s)	257, 402, 484, 863, 889, 964
HpyF3I	CTNAG	3 cut(s)	621, 815, 930
HpySE526I	ACGT	4 cut(s)	24, 198, 499, 973
Hsp92I	GRCGYC	3 cut(s)	363, 499, 973
Hsp92II	CATG	6 cut(s)	31, 130, 526, 557, 664, 881
HspAI	GCGC	3 cut(s)	327, 833, 967
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	2 cut(s)	412, 574
LmnI	GCTCC	3 cut(s)	101, 316, 359
Lsp1109I	GCAGC	3 cut(s)	712, 901, 976
LweI	GCATC	2 cut(s)	328, 895
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	4 cut(s)	24, 198, 499, 973
MaeIII	GTNAC	3 cut(s)	262, 558, 938
MalI	GATC	2 cut(s)	414, 576
MboI	GATC	2 cut(s)	412, 574
MboII	GAAGA	3 cut(s)	297, 494, 961
MluCI	AATT	2 cut(s)	105, 212
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	2 cut(s)	141, 607
MnlI	CCTC	9 cut(s)	39, 64, 80, 133, 151, 419, 542, 925, 937
MseI	TTAA	8 cut(s)	14, 270, 333, 468, 753, 795, 858, 1006
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	6 cut(s)	77, 93, 204, 278, 298, 378
MspR9I	CCNGG	4 cut(s)	93, 343, 379, 997
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	343, 997
MvnI	CGCG	5 cut(s)	38, 195, 327, 329, 833
NciI	CCSGG	2 cut(s)	93, 379
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	2 cut(s)	412, 574
NlaIII	CATG	6 cut(s)	31, 130, 526, 557, 664, 881
NlaIV	GGNNCC	3 cut(s)	97, 355, 388
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	557
PagI	TCATGA	1 cut(s)	27
PciI	ACATGT	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	322, 493
PkrI	GCNGC	6 cut(s)	103, 303, 589, 727, 891, 966
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	553
PshAI	GACNNNNGTC	1 cut(s)	873
PshBI	ATTAAT	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	341, 995
PspGI	CCWGG	2 cut(s)	341, 995
PspN4I	GGNNCC	3 cut(s)	97, 355, 388
PspPI	GGNCC	4 cut(s)	79, 487, 617, 677
PsrI	GAACNNNNNNTAC	2 cut(s)	122, 154
PstI	CTGCAG	2 cut(s)	404, 891
PstNI	CAGNNNCTG	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	725
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
SaqAI	TTAA	8 cut(s)	14, 270, 333, 468, 753, 795, 858, 1006
SatI	GCNGC	6 cut(s)	102, 302, 588, 726, 890, 965
Sau3AI	GATC	2 cut(s)	412, 574
Sau96I	GGNCC	4 cut(s)	79, 487, 617, 677
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	4 cut(s)	93, 343, 379, 997
SfaNI	GCATC	2 cut(s)	328, 895
SfcI	CTRYAG	2 cut(s)	400, 887
SinI	GGWCC	2 cut(s)	487, 617
Sse9I	AATT	2 cut(s)	105, 212
SsiI	CCGC	8 cut(s)	36, 99, 102, 145, 302, 408, 587, 831
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	4 cut(s)	91, 341, 377, 995
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	310, 760, 793, 875
TaiI	ACGT	4 cut(s)	27, 201, 502, 976
TaqI	TCGA	3 cut(s)	164, 496, 805
TasI	AATT	2 cut(s)	105, 212
TauI	GCSGC	3 cut(s)	104, 304, 590
TfiI	GAWTC	2 cut(s)	322, 493
Tru1I	TTAA	8 cut(s)	14, 270, 333, 468, 753, 795, 858, 1006
Tru9I	TTAA	8 cut(s)	14, 270, 333, 468, 753, 795, 858, 1006
TscAI	CASTG	4 cut(s)	409, 763, 774, 934
TseI	GCWGC	3 cut(s)	725, 889, 964
TspDTI	ATGAA	2 cut(s)	143, 205
TspRI	CASTG	4 cut(s)	409, 763, 774, 934
VpaK11BI	GGWCC	2 cut(s)	487, 617
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	557
XspI	CTAG	1 cut(s)	42
ZraI	GACGTC	2 cut(s)	500, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.