pycom13g09850

membrane protein YuiD-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010674
Physical Location & Seq
Forward (+)
6566605 .. 6568146
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGTTGAGGCGGCGGCGGCGGCATCATCGTCCTCAATCTTCACGAACTACCCTCTCCTCTCTGCTCTCGTAGCTTTTTCCATTGCCCAATTCATTAAGTTATTCACCTCCTGGTACAAGGAAAGAAGATGGGATTTCAAGCAACTTCTTGGATCCGGTGGAATGCCTTCATCTCATTCGGCGACTGTTACTGCTATTGCTACAGCCATTGGGTTCCAAGAAGGCGTCGGTGGATCACTCTTTGCAATTGCATTGATCTTAGCATGTGTGGTGATGTATGATGCAACCGGTGTAAGACTACAGGCTGGACGCCAAGCAGAGGTTTTGAATCAAATTGTATATGAACTCCCTGCTGAACATCCTTTGGCTGAGAGCAGACCACTACGTGAGCTTCTCGGCCACACCCCTCCTCAGGTTGTTGCCGGCAGTTTGCTTGGAATTGTCACAGCATGCATGGGCTATTTGATTACTATAACAATCAGTCATACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

165

Amino Acids

17.43

Weight (kDa)

6.4

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 15 - 148 4.6e-52 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 11, 14, 17, 20
AclWI GGATC 3 cut(s) 147, 160, 241
AcoI YGGCCR 1 cut(s) 397
AcyI GRCGYC 2 cut(s) 225, 310
AdeI CACNNNGTG 1 cut(s) 386
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 319, 412
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 2 cut(s) 139, 328
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 2 cut(s) 74, 391
AluI AGCT 2 cut(s) 74, 391
AlwI GGATC 3 cut(s) 147, 160, 241
AoxI GGCC 1 cut(s) 397
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 97, 283
AxyI CCTNAGG 1 cut(s) 411
BamHI GGATCC 1 cut(s) 152
BccI CCATC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 112
BfmI CTRYAG 2 cut(s) 201, 299
BisI GCNGC 4 cut(s) 12, 15, 18, 21
BlsI GCNGC 4 cut(s) 13, 16, 19, 22
Bme1390I CCNGG 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 154, 215
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 32, 271
BsaAI YACGTR 1 cut(s) 386
BsaHI GRCGYC 2 cut(s) 225, 310
BsaWI WCCGGW 2 cut(s) 155, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 412
Bse118I RCCGGY 2 cut(s) 287, 422
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 319, 412
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 360, 425
BseRI GAGGAG 2 cut(s) 47, 399
BshFI GGCC 1 cut(s) 399
BshTI ACCGGT 1 cut(s) 287
BsiSI CCGG 3 cut(s) 156, 288, 423
BslI CCNNNNNNNGG 2 cut(s) 319, 412
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 1 cut(s) 399
Bsp143I GATC 3 cut(s) 152, 233, 255
BspACI CCGC 4 cut(s) 11, 14, 17, 20
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 2 cut(s) 361, 424
BspLI GGNNCC 2 cut(s) 154, 215
BspPI GGATC 3 cut(s) 147, 160, 241
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 2 cut(s) 287, 422
BssAI RCCGGY 2 cut(s) 287, 422
BssMI GATC 3 cut(s) 152, 233, 255
BssNI GRCGYC 2 cut(s) 225, 310
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 187
BstACI GRCGYC 2 cut(s) 225, 310
BstBAI YACGTR 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 424, 451
BstDEI CTNAG 3 cut(s) 259, 369, 411
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 3 cut(s) 155, 236, 258
BstMBI GATC 3 cut(s) 152, 233, 255
BstMWI GCNNNNNNNGC 3 cut(s) 17, 20, 71
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 2 cut(s) 267, 453
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 2 cut(s) 201, 299
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 1 cut(s) 399
BtsCI GGATG 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 424, 451
Cfr10I RCCGGY 2 cut(s) 287, 422
CseI GACGC 2 cut(s) 214, 318
Csp6I GTAC 1 cut(s) 115
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 4 cut(s) 264, 450, 454, 492
CviJI RGCY 7 cut(s) 74, 206, 305, 368, 391, 399, 459
CviKI_1 RGCY 7 cut(s) 74, 206, 305, 368, 391, 399, 459
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 3 cut(s) 259, 369, 411
DpnI GATC 3 cut(s) 154, 235, 257
DpnII GATC 3 cut(s) 152, 233, 255
DraIII CACNNNGTG 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 397
Eco81I CCTNAGG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 455
FaeI CATG 4 cut(s) 267, 453, 457, 495
FaiI YATR 9 cut(s) 265, 279, 340, 342, 451, 455, 473, 486, 493
FatI CATG 4 cut(s) 263, 449, 453, 491
Fnu4HI GCNGC 4 cut(s) 12, 15, 18, 21
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 4 cut(s) 12, 15, 18, 21
GluI GCNGC 4 cut(s) 12, 15, 18, 21
HaeIII GGCC 1 cut(s) 399
HapII CCGG 3 cut(s) 156, 288, 423
HgaI GACGC 2 cut(s) 214, 318
Hin1I GRCGYC 2 cut(s) 225, 310
Hin1II CATG 4 cut(s) 267, 453, 457, 495
HinfI GANTC 1 cut(s) 328
HpaII CCGG 3 cut(s) 156, 288, 423
HphI GGTGA 2 cut(s) 97, 283
Hpy188III TCNNGA 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 177, 215
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 4 cut(s) 245, 251, 284, 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 20, 71
HpyF3I CTNAG 3 cut(s) 259, 369, 411
HpySE526I ACGT 1 cut(s) 385
Hsp92I GRCGYC 2 cut(s) 225, 310
Hsp92II CATG 4 cut(s) 267, 453, 457, 495
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Kzo9I GATC 3 cut(s) 152, 233, 255
LpnPI CCDG 9 cut(s) 97, 124, 169, 287, 291, 301, 363, 398, 436
LweI GCATC 2 cut(s) 32, 271
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 187, 442
MalI GATC 3 cut(s) 154, 235, 257
MboI GATC 3 cut(s) 152, 233, 255
MboII GAAGA 2 cut(s) 31, 138
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 152
MluCI AATT 4 cut(s) 89, 246, 333, 438
MnlI CCTC 7 cut(s) 43, 63, 68, 118, 313, 417, 420
Mph1103I ATGCAT 1 cut(s) 455
MroNI GCCGGC 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 166
MseI TTAA 1 cut(s) 96
MspI CCGG 3 cut(s) 156, 288, 423
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 17, 20, 71
NaeI GCCGGC 1 cut(s) 424
NdeII GATC 3 cut(s) 152, 233, 255
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 4 cut(s) 267, 453, 457, 495
NlaIV GGNNCC 2 cut(s) 154, 215
NmeAIII GCCGAG 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 455
NspI RCATGY 2 cut(s) 267, 453
PaeI GCATGC 1 cut(s) 453
PctI GAATGC 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 328
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 4 cut(s) 13, 16, 19, 22
Ppu21I YACGTR 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 154, 215
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 4 cut(s) 12, 15, 18, 21
Sau3AI GATC 3 cut(s) 152, 233, 255
ScrFI CCNGG 1 cut(s) 112
SetI ASST 6 cut(s) 76, 110, 324, 388, 393, 417
SfaNI GCATC 2 cut(s) 32, 271
SfcI CTRYAG 2 cut(s) 201, 299
SphI GCATGC 1 cut(s) 453
Sse9I AATT 4 cut(s) 89, 246, 333, 438
SsiI CCGC 4 cut(s) 11, 14, 17, 20
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 388
TasI AATT 4 cut(s) 89, 246, 333, 438
TauI GCSGC 4 cut(s) 14, 17, 20, 23
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 3 cut(s) 82, 159, 357
XceI RCATGY 2 cut(s) 267, 453
XmnI GAANNNNTTC 1 cut(s) 166
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.