Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005575

Physical Location & Seq

Genomic Coordinates Forward (+)

8218732 .. 8221743

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAGATTTCTGGGGTCAGCCAACATGAAGCTTTTCTGGGTTTTGGGGTTTATGGGGTTTGTGTTTTGCAGAACAGATGGAACTTTTATTGGGGATGTGAATGTCGCACAGGAACAAGACCTGCATTATACTGAGAGTAATGTGTATGGCTATGCAACTTATGGTTATGGGTTTTCCAGCAGACCCTTAATGGTGGGTCTCACACTTATCAATGGAGCTGCTGCCAAAGGAGCAGTCTGCCTGGATGGAACATTACCTGCTTACCACATCCACCATGGATACGGGTCAGGAGCAAACAGTTGGCTCATTCAGTTGGAGGGAGGAGGATGGTGTGATACAATCAGAAACTGTGTTTACCGTAAGAAAACTCATCGTGGTTCATCAGCATATATGGAGAAGTATATACCATTTGCAGGGATACTAAGCAACAAAGCAGGAGAAAACCCTGACTTTTACAATTGGAACAGAGTTAAGGTTCGATATTGTGATGGTGCATCTTTCGCCGGTGACAGTCACAATGCGGCTGCCCAATTGCATTTTCGAGGACAACGTATCTGGAAAGCTGCTATGGAAGACTTGATGTCAAGGGGAATGCGCTATGCTAATCAGGCTCTTCTTTCTGGATGTTCTGCTGGTGGGGTTGCAACTGTACTCCACTGTGATGAATTTCGTGGAATGTTCCCTGCAACTACTAGAGTGAAGTGCCTCAGTGATGCTGGACTGTTTCTTGACGTAGTTGATGTATCTGGTAGTCGCACTTTGAGAAGTATGTTTAGAAGAGTGGTTAGTCTGCAGGGCGTGCAAAAGAATCTCCCATGGAGTTGTACCAATCGCCTCCACCCGACTTTGTGCTTTTTCCCCCAGCACCTAATTGCAAGTGTCAAGACTCCCCTTTTTCTGGTCAATGCAGCTTATGATACATGGCAGATCCAGGCCAGTTTAGCTCCACGAACAGCAGACCCTAACGGCCATTGGCATGCATGCACAAAAAATAATGGACGTTGTGCTGCATGGCAGATGAACTTTTTGCAAGGTTTCCGGATTCAAATGCTCAAAGCTGTAAGTGGATTCTCGAGGGCTGGTAAAAATGGTTTGTTCATAAATTCTTGCTTTTCTCATTGCCAGACTGAGAGACAAGATACCTGGTTTTCTCAAAATTCTCCTCTTATTGGAAATAAGGGGATAGCAAAATCAGTCGGAAACTGGTATTTCGATCGGTATAGTATCAAAGCTATAGATTGTCCGTACCCTTGTGACAAGACCTGCCATAATCTGGTGTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

429

Amino Acids

47.68

Weight (kDa)

9.23

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09550 AT1G57590
fragaria_vesca	FvH4_4g21810 FvH4_4g21810 FvH4_4g21810 FvH4_4g21810 FvH4_4g21810 FvH4_4g21810
malus_domestica	MD13G1136800.v1.1 MD16G1132100.v1.1
prunus_persica	Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1
pyrus_communis	pycom13g11920 pycom16g11660
rosa_chinensis	RchiOBHm_Chr4g0428041
rosa_roxburghii	Rroxscaffold_5G00369760
rosa_rugosa	Rorug04G0221800.1 Rorug04G0221900 Rorug04G0222000
rosa_samantha	Rh4AG279000 Rh4BG284400 Rh4CG300100 Rh4DG281500
rosa_wichuraiana	Rw4G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	129, 265, 1271
AccB7I	CCANNNNNTGG	1 cut(s)	1273
AccIII	TCCGGA	1 cut(s)	1038
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	1 cut(s)	922
AcoI	YGGCCR	1 cut(s)	967
AcsI	RAATTY	3 cut(s)	665, 1102, 1156
AfaI	GTAC	3 cut(s)	651, 826, 1247
AfiI	CCNNNNNNNGG	4 cut(s)	413, 898, 1169, 1273
AgsI	TTSAA	1 cut(s)	1046
AhdI	GACNNNNNGTC	1 cut(s)	580
AjnI	CCWGG	3 cut(s)	240, 930, 1142
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	7 cut(s)	31, 218, 563, 911, 944, 1058, 1232
AluI	AGCT	7 cut(s)	31, 218, 563, 911, 944, 1058, 1232
Alw26I	GTCTC	2 cut(s)	203, 1126
AlwI	GGATC	1 cut(s)	922
AlwNI	CAGNNNCTG	1 cut(s)	348
Ama87I	CYCGRG	1 cut(s)	1072
Aor13HI	TCCGGA	1 cut(s)	1038
AoxI	GGCC	2 cut(s)	933, 967
ApeKI	GCWGC	6 cut(s)	218, 221, 524, 563, 908, 1007
ApoI	RAATTY	3 cut(s)	665, 1102, 1156
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	597
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	1072
BbsI	GAAGAC	1 cut(s)	579
BbvI	GCAGC	6 cut(s)	205, 208, 511, 550, 920, 994
BccI	CCATC	4 cut(s)	71, 239, 321, 482
BceAI	ACGGC	1 cut(s)	982
BciT130I	CCWGG	3 cut(s)	242, 932, 1144
BciVI	GTATCC	2 cut(s)	272, 411
BcoDI	GTCTC	2 cut(s)	203, 1126
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	2 cut(s)	791, 1233
BfuAI	ACCTGC	3 cut(s)	129, 265, 1271
BfuI	GTATCC	2 cut(s)	272, 411
BisI	GCNGC	7 cut(s)	219, 222, 522, 525, 564, 909, 1008
BlsI	GCNGC	7 cut(s)	220, 223, 523, 526, 565, 910, 1009
Bme1390I	CCNGG	3 cut(s)	242, 932, 1144
BmeRI	GACNNNNNGTC	1 cut(s)	580
BmeT110I	CYCGRG	1 cut(s)	1072
BmrFI	CCNGG	3 cut(s)	242, 932, 1144
BmsI	GCATC	2 cut(s)	503, 703
BpiI	GAAGAC	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	274, 815
BsaWI	WCCGGW	1 cut(s)	1038
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 898, 1169, 1273
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	936, 1208
Bse3DI	GCAATG	1 cut(s)	1117
BseAI	TCCGGA	1 cut(s)	1038
BseBI	CCWGG	3 cut(s)	242, 932, 1144
BseDI	CCNNGG	2 cut(s)	274, 815
BseGI	GGATG	5 cut(s)	100, 250, 267, 332, 629
BseLI	CCNNNNNNNGG	4 cut(s)	413, 898, 1169, 1273
BseMI	GCAATG	1 cut(s)	1117
BseMII	CTCAG	3 cut(s)	123, 721, 1119
BseNI	ACTGG	2 cut(s)	936, 1208
BseRI	GAGGAG	2 cut(s)	336, 1152
BseXI	GCAGC	6 cut(s)	205, 208, 511, 550, 920, 994
BseYI	CCCAGC	1 cut(s)	861
Bsh1285I	CGRYCG	1 cut(s)	1216
BshFI	GGCC	2 cut(s)	935, 969
BsiEI	CGRYCG	1 cut(s)	1216
BsiHKCI	CYCGRG	1 cut(s)	1072
BsiSI	CCGG	2 cut(s)	504, 1039
BslI	CCNNNNNNNGG	4 cut(s)	413, 898, 1169, 1273
BsmAI	GTCTC	2 cut(s)	203, 1126
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	2 cut(s)	935, 969
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	1072
Bsp13I	TCCGGA	1 cut(s)	1038
Bsp143I	GATC	2 cut(s)	927, 1213
Bsp19I	CCATGG	2 cut(s)	274, 815
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	2 cut(s)	935, 969
BspCNI	CTCAG	3 cut(s)	124, 720, 1120
BspEI	TCCGGA	1 cut(s)	1038
BspMAI	CTGCAG	1 cut(s)	795
BspMI	ACCTGC	3 cut(s)	129, 265, 1271
BspPI	GGATC	1 cut(s)	922
BspQI	GCTCTTC	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	1117
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	936, 1208
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	2 cut(s)	274, 815
BssMI	GATC	2 cut(s)	927, 1213
BssT1I	CCWWGG	2 cut(s)	274, 815
Bst2UI	CCWGG	3 cut(s)	242, 932, 1144
Bst4CI	ACNGT	7 cut(s)	299, 350, 359, 512, 649, 659, 723
Bst6I	CTCTTC	2 cut(s)	618, 772
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstC8I	GCNNGC	3 cut(s)	800, 978, 982
BstDEI	CTNAG	4 cut(s)	132, 422, 707, 1128
BstDSI	CCRYGG	2 cut(s)	274, 815
BstF5I	GGATG	5 cut(s)	100, 250, 267, 332, 629
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	2 cut(s)	930, 1216
BstMAI	GTCTC	2 cut(s)	203, 1126
BstMBI	GATC	2 cut(s)	927, 1213
BstMCI	CGRYCG	1 cut(s)	1216
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 500, 608, 799, 941
BstNI	CCWGG	3 cut(s)	242, 932, 1144
BstNSI	RCATGY	2 cut(s)	980, 984
BstSCI	CCNGG	3 cut(s)	240, 930, 1142
BstSFI	CTRYAG	2 cut(s)	791, 1233
BstV1I	GCAGC	6 cut(s)	205, 208, 511, 550, 920, 994
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	1 cut(s)	927
BstYI	RGATCY	1 cut(s)	927
BsuI	GTATCC	2 cut(s)	272, 411
BsuRI	GGCC	2 cut(s)	935, 969
BtgI	CCRYGG	2 cut(s)	274, 815
BtsCI	GGATG	5 cut(s)	100, 250, 267, 332, 629
BtsIMutI	CAGTG	2 cut(s)	655, 715
BveI	ACCTGC	3 cut(s)	129, 265, 1271
Cac8I	GCNNGC	3 cut(s)	800, 978, 982
CaiI	CAGNNNCTG	1 cut(s)	348
CfoI	GCGC	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	503
CsiI	ACCWGGT	1 cut(s)	1142
Csp6I	GTAC	3 cut(s)	650, 825, 1246
CviAII	CATG	7 cut(s)	25, 275, 816, 921, 977, 981, 1011
CviQI	GTAC	3 cut(s)	650, 825, 1246
DdeI	CTNAG	4 cut(s)	132, 422, 707, 1128
DpnI	GATC	2 cut(s)	929, 1215
DpnII	GATC	2 cut(s)	927, 1213
DriI	GACNNNNNGTC	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	967
Eam1104I	CTCTTC	2 cut(s)	618, 772
Eam1105I	GACNNNNNGTC	1 cut(s)	580
EarI	CTCTTC	2 cut(s)	618, 772
Eco130I	CCWWGG	2 cut(s)	274, 815
Eco31I	GGTCTC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	1072
EcoRII	CCWGG	3 cut(s)	240, 930, 1142
EcoT14I	CCWWGG	2 cut(s)	274, 815
EcoT22I	ATGCAT	1 cut(s)	982
ErhI	CCWWGG	2 cut(s)	274, 815
FaeI	CATG	7 cut(s)	28, 278, 819, 924, 980, 984, 1014
FatI	CATG	7 cut(s)	24, 274, 815, 920, 976, 980, 1010
Fnu4HI	GCNGC	7 cut(s)	219, 222, 522, 525, 564, 909, 1008
FokI	GGATG	5 cut(s)	107, 254, 257, 339, 636
Fsp4HI	GCNGC	7 cut(s)	219, 222, 522, 525, 564, 909, 1008
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	7 cut(s)	219, 222, 522, 525, 564, 909, 1008
GsaI	CCCAGC	1 cut(s)	865
HaeIII	GGCC	2 cut(s)	935, 969
HapII	CCGG	2 cut(s)	504, 1039
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	7 cut(s)	28, 278, 819, 924, 980, 984, 1014
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	4 cut(s)	808, 886, 1042, 1068
HpaII	CCGG	2 cut(s)	504, 1039
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	344, 1199
Hpy188III	TCNNGA	7 cut(s)	288, 556, 621, 728, 883, 1039, 1072
Hpy8I	GTNNAC	1 cut(s)	355
HpyCH4III	ACNGT	7 cut(s)	299, 350, 359, 512, 649, 659, 723
HpyCH4IV	ACGT	3 cut(s)	550, 732, 1000
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 500, 608, 799, 941
HpyF3I	CTNAG	4 cut(s)	132, 422, 707, 1128
HpySE526I	ACGT	3 cut(s)	550, 732, 1000
Hsp92II	CATG	7 cut(s)	28, 278, 819, 924, 980, 984, 1014
HspAI	GCGC	1 cut(s)	595
Kpn2I	TCCGGA	1 cut(s)	1038
Kzo9I	GATC	2 cut(s)	927, 1213
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	4 cut(s)	215, 230, 290, 949
Lsp1109I	GCAGC	6 cut(s)	205, 208, 511, 550, 920, 994
LweI	GCATC	2 cut(s)	503, 703
MabI	ACCWGGT	1 cut(s)	1142
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	3 cut(s)	550, 732, 1000
MaeIII	GTNAC	3 cut(s)	506, 512, 1253
MalI	GATC	2 cut(s)	929, 1215
MboI	GATC	2 cut(s)	927, 1213
MboII	GAAGA	3 cut(s)	584, 605, 789
MfeI	CAATTG	2 cut(s)	457, 530
MflI	RGATCY	1 cut(s)	927
MluCI	AATT	6 cut(s)	457, 530, 665, 870, 1102, 1156
MlyI	GAGTC	1 cut(s)	880
MmeI	TCCRAC	2 cut(s)	294, 1177
MnlI	CCTC	8 cut(s)	310, 314, 317, 536, 716, 845, 1068, 1173
Mph1103I	ATGCAT	1 cut(s)	982
MroI	TCCGGA	1 cut(s)	1038
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	188, 471, 1281
MslI	CAYNNNNRTG	2 cut(s)	660, 975
MspI	CCGG	2 cut(s)	504, 1039
MspR9I	CCNGG	3 cut(s)	242, 932, 1144
MunI	CAATTG	2 cut(s)	457, 530
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	3 cut(s)	242, 932, 1144
MwoI	GCNNNNNNNGC	5 cut(s)	230, 500, 608, 799, 941
NcoI	CCATGG	2 cut(s)	274, 815
NdeII	GATC	2 cut(s)	927, 1213
NlaIII	CATG	7 cut(s)	28, 278, 819, 924, 980, 984, 1014
NmuCI	GTSAC	3 cut(s)	506, 512, 1253
NsiI	ATGCAT	1 cut(s)	982
NspI	RCATGY	2 cut(s)	980, 984
PaeI	GCATGC	2 cut(s)	980, 984
PaeR7I	CTCGAG	1 cut(s)	1072
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	547
PctI	GAATGC	1 cut(s)	597
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	808, 1042, 1068
PflMI	CCANNNNNTGG	1 cut(s)	1273
PkrI	GCNGC	7 cut(s)	220, 223, 523, 526, 565, 910, 1009
Ple19I	CGATCG	1 cut(s)	1216
PleI	GAGTC	1 cut(s)	880
PpsI	GAGTC	1 cut(s)	880
Psp6I	CCWGG	3 cut(s)	240, 930, 1142
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	3 cut(s)	240, 930, 1142
PstI	CTGCAG	1 cut(s)	795
PstNI	CAGNNNCTG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	927
PvuI	CGATCG	1 cut(s)	1216
RsaI	GTAC	3 cut(s)	651, 826, 1247
RsaNI	GTAC	3 cut(s)	650, 825, 1246
RseI	CAYNNNNRTG	2 cut(s)	660, 975
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	188, 471, 1281
SatI	GCNGC	7 cut(s)	219, 222, 522, 525, 564, 909, 1008
Sau3AI	GATC	2 cut(s)	927, 1213
SchI	GAGTC	1 cut(s)	880
ScrFI	CCNGG	3 cut(s)	242, 932, 1144
SexAI	ACCWGGT	1 cut(s)	1142
SfaNI	GCATC	2 cut(s)	503, 703
SfcI	CTRYAG	2 cut(s)	791, 1233
Sfr274I	CTCGAG	1 cut(s)	1072
SgrAI	CRCCGGYG	1 cut(s)	503
SlaI	CTCGAG	1 cut(s)	1072
SmiMI	CAYNNNNRTG	2 cut(s)	660, 975
SmlI	CTYRAG	1 cut(s)	1072
SmoI	CTYRAG	1 cut(s)	1072
SphI	GCATGC	2 cut(s)	980, 984
Sse9I	AATT	6 cut(s)	457, 530, 665, 870, 1102, 1156
SsiI	CCGC	1 cut(s)	521
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	3 cut(s)	240, 930, 1142
StyI	CCWWGG	2 cut(s)	274, 815
TaaI	ACNGT	7 cut(s)	299, 350, 359, 512, 649, 659, 723
TaiI	ACGT	3 cut(s)	553, 735, 1003
TaqI	TCGA	4 cut(s)	478, 541, 1073, 1212
TasI	AATT	6 cut(s)	457, 530, 665, 870, 1102, 1156
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	3 cut(s)	808, 1042, 1068
Tru1I	TTAA	3 cut(s)	188, 471, 1281
Tru9I	TTAA	3 cut(s)	188, 471, 1281
TscAI	CASTG	2 cut(s)	662, 715
TseFI	GTSAC	3 cut(s)	506, 512, 1253
TseI	GCWGC	6 cut(s)	218, 221, 524, 563, 908, 1007
Tsp45I	GTSAC	3 cut(s)	506, 512, 1253
TspDTI	ATGAA	5 cut(s)	41, 369, 678, 1034, 1087
TspGWI	ACGGA	1 cut(s)	1233
TspRI	CASTG	2 cut(s)	662, 715
Van91I	CCANNNNNTGG	1 cut(s)	1273
XapI	RAATTY	3 cut(s)	665, 1102, 1156
XceI	RCATGY	2 cut(s)	980, 984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	1072
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	693
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.