Rorug04G0222000

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005575
Physical Location & Seq
Forward (+)
38131713 .. 38131940
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0222000.1

Sequence Viewer

Length: 228 bp
ATGCCGGCGGCCTGCGCCGTCAAGATGATCCACACCATGTTGTTGATCCACGACGACTTGCCGTGCATGGATAATGACGATCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTTGCAGTTTTGGCGGGCGAAGCGCTTCTCTCCTTCGCGGTCGAGCACCTAGCCTTGTCCACCGTCGGCATCGAGCCTTCTAGAATCATCCGAGCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
PAE

Protein Analysis

75

Amino Acids

8.14

Weight (kDa)

5.67

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 3 - 61 1.1e-17 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 90, 164
AciI CCGC 6 cut(s) 8, 85, 88, 90, 140, 164
AclWI GGATC 2 cut(s) 22, 40
AfeI AGCGCT 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 2 cut(s) 22, 40
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 2 cut(s) 17, 151
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 174
BceAI ACGGC 3 cut(s) 2, 46, 206
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BfaI CTAG 2 cut(s) 176, 207
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 2 cut(s) 9, 88
BlsI GCNGC 2 cut(s) 10, 89
BmsI GCATC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 4
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 213
Bsh1236I CGCG 2 cut(s) 90, 164
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 5
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 27, 45, 79
BspACI CCGC 6 cut(s) 8, 85, 88, 90, 140, 164
BspANI GGCC 1 cut(s) 11
BspFNI CGCG 2 cut(s) 90, 164
BspPI GGATC 2 cut(s) 22, 40
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 3 cut(s) 27, 45, 79
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 3 cut(s) 6, 13, 142
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 213
BstFNI CGCG 2 cut(s) 90, 164
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 17, 151
BstKTI GATC 3 cut(s) 30, 48, 82
BstMBI GATC 3 cut(s) 27, 45, 79
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 14, 137, 146
BstUI CGCG 2 cut(s) 90, 164
BstV2I GAAGAC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 6, 13, 142
CfoI GCGC 2 cut(s) 17, 151
Cfr10I RCCGGY 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 91
CviAII CATG 2 cut(s) 37, 67
CviJI RGCY 5 cut(s) 11, 97, 179, 202, 221
CviKI_1 RGCY 5 cut(s) 11, 97, 179, 202, 221
DpnI GATC 3 cut(s) 29, 47, 81
DpnII GATC 3 cut(s) 27, 45, 79
EciI GGCGGA 1 cut(s) 74
Eco47III AGCGCT 1 cut(s) 150
FaeI CATG 2 cut(s) 40, 70
FaiI YATR 2 cut(s) 38, 68
FatI CATG 2 cut(s) 36, 66
FauI CCCGC 2 cut(s) 83, 133
Fnu4HI GCNGC 2 cut(s) 9, 88
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 9, 88
FspBI CTAG 2 cut(s) 176, 207
GlaI GCGC 2 cut(s) 16, 150
GluI GCNGC 2 cut(s) 9, 88
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 5
HhaI GCGC 2 cut(s) 17, 151
Hin1II CATG 2 cut(s) 40, 70
Hin6I GCGC 2 cut(s) 15, 149
HinP1I GCGC 2 cut(s) 15, 149
HinfI GANTC 1 cut(s) 210
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 2 cut(s) 22, 207
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 2 cut(s) 56, 194
HpyAV CCTTC 2 cut(s) 169, 213
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 66, 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 137, 146
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 2 cut(s) 40, 70
HspAI GCGC 2 cut(s) 15, 149
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 3 cut(s) 27, 45, 79
LpnPI CCDG 2 cut(s) 18, 25
LweI GCATC 1 cut(s) 204
MaeI CTAG 2 cut(s) 176, 207
MaeII ACGT 1 cut(s) 126
MalI GATC 3 cut(s) 29, 47, 81
MboI GATC 3 cut(s) 27, 45, 79
MboII GAAGA 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 174
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 1 cut(s) 5
MvnI CGCG 2 cut(s) 90, 164
MwoI GCNNNNNNNGC 3 cut(s) 14, 137, 146
NaeI GCCGGC 1 cut(s) 6
NdeII GATC 3 cut(s) 27, 45, 79
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 40, 70
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 2 cut(s) 10, 89
SacII CCGCGG 1 cut(s) 91
SatI GCNGC 2 cut(s) 9, 88
Sau3AI GATC 3 cut(s) 27, 45, 79
SduI GDGCHC 1 cut(s) 174
SetI ASST 3 cut(s) 114, 129, 177
SfaNI GCATC 1 cut(s) 204
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SsiI CCGC 6 cut(s) 8, 85, 88, 90, 140, 164
SspMI CTAG 2 cut(s) 176, 207
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 168, 198
TauI GCSGC 2 cut(s) 11, 90
TfiI GAWTC 1 cut(s) 210
XbaI TCTAGA 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 2 cut(s) 176, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.