Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005575

Physical Location & Seq

Genomic Coordinates Forward (+)

8094201 .. 8097689

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAGATTTCTGGGGTCAGCCAACATGAAGCTTTTGTGGGTTGTGGGGTTTATGGGGTTACTGTTTTGCAGAAGAACAGATGGAACTTTTATTAGGGAAGTGAATGTCACCCAGGAACAAGACCTGCATTATACAGAGAGTAATGTGTATGGCTATGCAGCTTATGGTTATGGGGTTTTCACCAGACCCTTGATGGTGGGTCTCACTCTCATCAATGGAGCTGCTGCCAAAGGAGCAGTCTGCTTAGATGGAACATTACCTGCTTACCACATCCACCGCGGATACGGGTCAGGAGCAAACAGTTGGCTCATCCAGTTGGAGGGAGGAGGATGGTGTGATACAATCAGAAATTGTGTCTATCGTAAGAAAACTCGTCGTGGTTCATCAGCATATATGGAGAAGCAGATACCATTTTCCGGGATATTGAGCAACAAGGCTGGAGAAAACCCTGACTTTTACAACTGGAACAGAGTTAAGGTTCGATATTGTGATGGTGCATCTTTCAGCGGTGACAGTCAAAATGAGGCTGCCCAATTGCATTTTCGAGGGCAACGTATCTGGAAAGCTGCTATGGAAGACTTGATGTCAAAGGGAATGGGCTATGCTAATCAGGCTCTTCTTTCTGGATGTTCTGCTGGTGGTGTTGCAACTGTACTCCACTGTGATGGATTTCGTGGAATGTTTCCCGCAACTACTAAAGTCAAGTGCCTCAGCGATGGTGGATTGTTTCTTGACGCAATTGATGTATCTGGTAGGCGCACTTTGAGAAGTATGTTTAGAAGAGTGGTTAGCCTACAGGGGGTGCAAAAGAATCTCCCACGGAGTTGTACCATTCGCCTCAACCCGACTTTGTGCTTTTTCCCCCAGCACTTAATTGCAAGTGTCAAGACTCCCCTTTTTCTGGTCAATGCAGCTTATGATACATGGCAGATCCAGGCCAGTTTAGCTCCACGAACAGCAGACCCTAATGGCCATTGGCATGCATGCACAAACAATAATGCAAATTGTGCTGCATGGCAAATTAAGTTTTTGCAAGGTTTCCGGAATCAGATGCTCAAAGCTGTAAGCGGATTCTCGAGGGCCGGTAAAAATGGTTTGTTCATAAATTCTTGCTTTTCTCATTGCCAGACCGAGAGACAAGACACCTGGTTTTCTCAAAATCCTCCCCTTATTGGAAATAAGGGGATAGCAAAATCAGTTGGAAACTGGTATTTCGATCGGTATAGTATCAAAGCTATTGATTGTCCGTACCCTTGTGACAAGACCTGCCATAATCTGGTGTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

430

Amino Acids

47.71

Weight (kDa)

9.42

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09550 AT1G57590
fragaria_vesca	FvH4_4g21810 FvH4_4g21810 FvH4_4g21810 FvH4_4g21810 FvH4_4g21810 FvH4_4g21810
malus_domestica	MD13G1136800.v1.1 MD16G1132100.v1.1
prunus_persica	Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1 Prupe.1G208600_v2.0.a1
pyrus_communis	pycom13g11920 pycom16g11660
rosa_chinensis	RchiOBHm_Chr4g0428041
rosa_roxburghii	Rroxscaffold_5G00369760
rosa_rugosa	Rorug04G0221800.1 Rorug04G0221900 Rorug04G0222000
rosa_samantha	Rh4AG279000 Rh4BG284400 Rh4CG300100 Rh4DG281500
rosa_wichuraiana	Rw4G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	132, 268, 1274
AccB7I	CCANNNNNTGG	1 cut(s)	1276
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	1041
AciI	CCGC	5 cut(s)	277, 279, 507, 687, 1068
AclWI	GGATC	1 cut(s)	925
AcoI	YGGCCR	1 cut(s)	970
AcsI	RAATTY	1 cut(s)	1105
AfaI	GTAC	3 cut(s)	654, 829, 1250
AfiI	CCNNNNNNNGG	6 cut(s)	319, 416, 799, 901, 1172, 1276
AhdI	GACNNNNNGTC	1 cut(s)	583
AjnI	CCWGG	3 cut(s)	111, 933, 1145
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	8 cut(s)	31, 161, 221, 566, 914, 947, 1061, 1235
AluI	AGCT	8 cut(s)	31, 161, 221, 566, 914, 947, 1061, 1235
Alw26I	GTCTC	2 cut(s)	206, 1129
AlwI	GGATC	1 cut(s)	925
Ama87I	CYCGRG	1 cut(s)	1075
Aor13HI	TCCGGA	1 cut(s)	1041
AoxI	GGCC	3 cut(s)	936, 970, 1080
ApeKI	GCWGC	7 cut(s)	158, 221, 224, 527, 566, 911, 1010
ApoI	RAATTY	1 cut(s)	1105
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	1 cut(s)	759
AspS9I	GGNCC	1 cut(s)	1080
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	3 cut(s)	100, 172, 521
AvaI	CYCGRG	1 cut(s)	1075
BalI	TGGCCA	1 cut(s)	972
BbsI	GAAGAC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	7 cut(s)	170, 208, 211, 514, 553, 923, 997
BccI	CCATC	7 cut(s)	74, 187, 242, 324, 485, 659, 710
BciT130I	CCWGG	3 cut(s)	113, 935, 1147
BciVI	GTATCC	1 cut(s)	275
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	206, 1129
BfmI	CTRYAG	1 cut(s)	794
BfuAI	ACCTGC	3 cut(s)	132, 268, 1274
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	7 cut(s)	159, 222, 225, 528, 567, 912, 1011
BlsI	GCNGC	7 cut(s)	160, 223, 226, 529, 568, 913, 1012
Bme1390I	CCNGG	4 cut(s)	113, 418, 935, 1147
BmeRI	GACNNNNNGTC	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	1075
BmgT120I	GGNCC	1 cut(s)	1080
BmrFI	CCNGG	4 cut(s)	113, 418, 935, 1147
BmsI	GCATC	2 cut(s)	506, 1041
BpiI	GAAGAC	1 cut(s)	582
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	710
BpuMI	CCSGG	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	111, 277, 818
BsaWI	WCCGGW	1 cut(s)	1041
Bsc4I	CCNNNNNNNGG	6 cut(s)	319, 416, 799, 901, 1172, 1276
Bse118I	RCCGGY	1 cut(s)	1082
Bse1I	ACTGG	4 cut(s)	313, 467, 939, 1211
Bse3DI	GCAATG	1 cut(s)	1120
BseAI	TCCGGA	1 cut(s)	1041
BseBI	CCWGG	3 cut(s)	113, 935, 1147
BseDI	CCNNGG	3 cut(s)	111, 277, 818
BseGI	GGATG	4 cut(s)	270, 309, 335, 632
BseLI	CCNNNNNNNGG	6 cut(s)	319, 416, 799, 901, 1172, 1276
BseMI	GCAATG	1 cut(s)	1120
BseMII	CTCAG	1 cut(s)	724
BseNI	ACTGG	4 cut(s)	313, 467, 939, 1211
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	7 cut(s)	170, 208, 211, 514, 553, 923, 997
BseYI	CCCAGC	1 cut(s)	864
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	1219
BshFI	GGCC	3 cut(s)	938, 972, 1082
BsiEI	CGRYCG	1 cut(s)	1219
BsiHKCI	CYCGRG	1 cut(s)	1075
BsiSI	CCGG	3 cut(s)	417, 1042, 1083
BslI	CCNNNNNNNGG	6 cut(s)	319, 416, 799, 901, 1172, 1276
BsmAI	GTCTC	2 cut(s)	206, 1129
BsnI	GGCC	3 cut(s)	938, 972, 1082
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	1075
Bsp13I	TCCGGA	1 cut(s)	1041
Bsp143I	GATC	2 cut(s)	930, 1216
BspACI	CCGC	5 cut(s)	277, 279, 507, 687, 1068
BspANI	GGCC	3 cut(s)	938, 972, 1082
BspCNI	CTCAG	1 cut(s)	723
BspEI	TCCGGA	1 cut(s)	1041
BspFNI	CGCG	1 cut(s)	279
BspMI	ACCTGC	3 cut(s)	132, 268, 1274
BspPI	GGATC	1 cut(s)	925
BspQI	GCTCTTC	1 cut(s)	621
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	1120
BsrFI	RCCGGY	1 cut(s)	1082
BsrI	ACTGG	4 cut(s)	313, 467, 939, 1211
BssAI	RCCGGY	1 cut(s)	1082
BssECI	CCNNGG	3 cut(s)	111, 277, 818
BssMI	GATC	2 cut(s)	930, 1216
Bst2UI	CCWGG	3 cut(s)	113, 935, 1147
Bst4CI	ACNGT	5 cut(s)	63, 302, 515, 652, 662
Bst6I	CTCTTC	2 cut(s)	621, 775
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstC8I	GCNNGC	2 cut(s)	981, 985
BstDEI	CTNAG	2 cut(s)	244, 710
BstDSI	CCRYGG	2 cut(s)	277, 818
BstF5I	GGATG	4 cut(s)	270, 309, 335, 632
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	2 cut(s)	933, 1219
BstMAI	GTCTC	2 cut(s)	206, 1129
BstMBI	GATC	2 cut(s)	930, 1216
BstMCI	CGRYCG	1 cut(s)	1219
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 611, 944, 1007
BstNI	CCWGG	3 cut(s)	113, 935, 1147
BstNSI	RCATGY	2 cut(s)	983, 987
BstSCI	CCNGG	4 cut(s)	111, 416, 933, 1145
BstSFI	CTRYAG	1 cut(s)	794
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	7 cut(s)	170, 208, 211, 514, 553, 923, 997
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	930
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	930
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	938, 972, 1082
BtgI	CCRYGG	2 cut(s)	277, 818
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	4 cut(s)	270, 309, 335, 632
BtsIMutI	CAGTG	1 cut(s)	658
BveI	ACCTGC	3 cut(s)	132, 268, 1274
Cac8I	GCNNGC	2 cut(s)	981, 985
CfoI	GCGC	1 cut(s)	759
Cfr10I	RCCGGY	1 cut(s)	1082
Cfr13I	GGNCC	1 cut(s)	1080
Cfr42I	CCGCGG	1 cut(s)	280
CseI	GACGC	1 cut(s)	743
CsiI	ACCWGGT	1 cut(s)	1145
Csp6I	GTAC	3 cut(s)	653, 828, 1249
CviAII	CATG	5 cut(s)	25, 924, 980, 984, 1014
CviQI	GTAC	3 cut(s)	653, 828, 1249
DdeI	CTNAG	2 cut(s)	244, 710
DpnI	GATC	2 cut(s)	932, 1218
DpnII	GATC	2 cut(s)	930, 1216
DriI	GACNNNNNGTC	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	970
Eam1104I	CTCTTC	2 cut(s)	621, 775
Eam1105I	GACNNNNNGTC	1 cut(s)	583
EarI	CTCTTC	2 cut(s)	621, 775
Eco31I	GGTCTC	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	1075
EcoRII	CCWGG	3 cut(s)	111, 933, 1145
EcoT22I	ATGCAT	1 cut(s)	985
FaeI	CATG	5 cut(s)	28, 927, 983, 987, 1017
FatI	CATG	5 cut(s)	24, 923, 979, 983, 1013
FauI	CCCGC	1 cut(s)	694
Fnu4HI	GCNGC	7 cut(s)	159, 222, 225, 528, 567, 912, 1011
FokI	GGATG	4 cut(s)	257, 296, 342, 639
Fsp4HI	GCNGC	7 cut(s)	159, 222, 225, 528, 567, 912, 1011
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	7 cut(s)	159, 222, 225, 528, 567, 912, 1011
GsaI	CCCAGC	1 cut(s)	868
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	938, 972, 1082
HapII	CCGG	3 cut(s)	417, 1042, 1083
HgaI	GACGC	1 cut(s)	743
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	5 cut(s)	28, 927, 983, 987, 1017
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	4 cut(s)	811, 889, 1045, 1071
HpaII	CCGG	3 cut(s)	417, 1042, 1083
HphI	GGTGA	3 cut(s)	100, 172, 521
Hpy188I	TCNGA	2 cut(s)	347, 1050
Hpy188III	TCNNGA	7 cut(s)	291, 559, 624, 731, 886, 1042, 1075
Hpy99I	CGWCG	1 cut(s)	378
HpyCH4III	ACNGT	5 cut(s)	63, 302, 515, 652, 662
HpyCH4IV	ACGT	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 611, 944, 1007
HpyF3I	CTNAG	2 cut(s)	244, 710
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	5 cut(s)	28, 927, 983, 987, 1017
HspAI	GCGC	1 cut(s)	757
Kpn2I	TCCGGA	1 cut(s)	1041
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	930, 1216
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	4 cut(s)	218, 233, 293, 952
Lsp1109I	GCAGC	7 cut(s)	170, 208, 211, 514, 553, 923, 997
LweI	GCATC	2 cut(s)	506, 1041
MabI	ACCWGGT	1 cut(s)	1145
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	4 cut(s)	57, 106, 509, 1256
MalI	GATC	2 cut(s)	932, 1218
MboI	GATC	2 cut(s)	930, 1216
MboII	GAAGA	4 cut(s)	84, 587, 608, 792
MfeI	CAATTG	2 cut(s)	533, 738
MflI	RGATCY	1 cut(s)	930
MlsI	TGGCCA	1 cut(s)	972
MluCI	AATT	7 cut(s)	349, 533, 738, 873, 1003, 1020, 1105
MluNI	TGGCCA	1 cut(s)	972
MlyI	GAGTC	1 cut(s)	883
MmeI	TCCRAC	2 cut(s)	297, 1180
MnlI	CCTC	9 cut(s)	313, 317, 320, 517, 539, 719, 848, 1071, 1173
Mox20I	TGGCCA	1 cut(s)	972
Mph1103I	ATGCAT	1 cut(s)	985
MroI	TCCGGA	1 cut(s)	1041
MscI	TGGCCA	1 cut(s)	972
MseI	TTAA	4 cut(s)	474, 872, 1023, 1284
MslI	CAYNNNNRTG	2 cut(s)	663, 978
Msp20I	TGGCCA	1 cut(s)	972
MspA1I	CMGCKG	2 cut(s)	279, 507
MspI	CCGG	3 cut(s)	417, 1042, 1083
MspR9I	CCNGG	4 cut(s)	113, 418, 935, 1147
MunI	CAATTG	2 cut(s)	533, 738
MvaI	CCWGG	3 cut(s)	113, 935, 1147
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	233, 611, 944, 1007
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	2 cut(s)	930, 1216
NlaIII	CATG	5 cut(s)	28, 927, 983, 987, 1017
NmuCI	GTSAC	3 cut(s)	106, 509, 1256
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	2 cut(s)	983, 987
PaeI	GCATGC	2 cut(s)	983, 987
PaeR7I	CTCGAG	1 cut(s)	1075
PciSI	GCTCTTC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	550
PfeI	GAWTC	3 cut(s)	811, 1045, 1071
PflMI	CCANNNNNTGG	1 cut(s)	1276
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	7 cut(s)	160, 223, 226, 529, 568, 913, 1012
Ple19I	CGATCG	1 cut(s)	1219
PleI	GAGTC	1 cut(s)	883
PpsI	GAGTC	1 cut(s)	883
Psp6I	CCWGG	3 cut(s)	111, 933, 1145
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	3 cut(s)	111, 933, 1145
PspPI	GGNCC	1 cut(s)	1080
PsuI	RGATCY	1 cut(s)	930
PvuI	CGATCG	1 cut(s)	1219
RsaI	GTAC	3 cut(s)	654, 829, 1250
RsaNI	GTAC	3 cut(s)	653, 828, 1249
RseI	CAYNNNNRTG	2 cut(s)	663, 978
SacII	CCGCGG	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	4 cut(s)	474, 872, 1023, 1284
SatI	GCNGC	7 cut(s)	159, 222, 225, 528, 567, 912, 1011
Sau3AI	GATC	2 cut(s)	930, 1216
Sau96I	GGNCC	1 cut(s)	1080
SchI	GAGTC	1 cut(s)	883
ScrFI	CCNGG	4 cut(s)	113, 418, 935, 1147
SexAI	ACCWGGT	1 cut(s)	1145
SfaNI	GCATC	2 cut(s)	506, 1041
SfcI	CTRYAG	1 cut(s)	794
Sfr274I	CTCGAG	1 cut(s)	1075
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	1075
SmiMI	CAYNNNNRTG	2 cut(s)	663, 978
SmlI	CTYRAG	1 cut(s)	1075
SmoI	CTYRAG	1 cut(s)	1075
SphI	GCATGC	2 cut(s)	983, 987
Sse9I	AATT	7 cut(s)	349, 533, 738, 873, 1003, 1020, 1105
SsiI	CCGC	5 cut(s)	277, 279, 507, 687, 1068
StyD4I	CCNGG	4 cut(s)	111, 416, 933, 1145
TaaI	ACNGT	5 cut(s)	63, 302, 515, 652, 662
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	4 cut(s)	481, 544, 1076, 1215
TaqII	GACCGA	1 cut(s)	1145
TasI	AATT	7 cut(s)	349, 533, 738, 873, 1003, 1020, 1105
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	3 cut(s)	811, 1045, 1071
Tru1I	TTAA	4 cut(s)	474, 872, 1023, 1284
Tru9I	TTAA	4 cut(s)	474, 872, 1023, 1284
TscAI	CASTG	1 cut(s)	665
TseFI	GTSAC	3 cut(s)	106, 509, 1256
TseI	GCWGC	7 cut(s)	158, 221, 224, 527, 566, 911, 1010
Tsp45I	GTSAC	3 cut(s)	106, 509, 1256
TspDTI	ATGAA	3 cut(s)	41, 372, 1090
TspGWI	ACGGA	2 cut(s)	835, 1236
TspRI	CASTG	1 cut(s)	665
Van91I	CCANNNNNTGG	1 cut(s)	1276
XapI	RAATTY	1 cut(s)	1105
XceI	RCATGY	2 cut(s)	983, 987
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	1075
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.