pycom13g12250

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0007832
Physical Location & Seq
Reverse (-)
8472488 .. 8475854
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1119 bp
ATGCCCAAGATGATCAGCAAACCGCTGTTGCTGACTTACTTTTACCTGTTCATCTACATTCTGCTTTCGTCCGGTGTTATATTGTACAACAAGTGGGTTCTGTCTCCGAAATACTTCAATTTTCCATTACCCATCACACTTACAATGATTCATATGGGATTTTCTGGACTAGTAGCATTTCTTCTTGTTCGTGTTTTCAAGGTTGTAGCTCCTGTCAAAATGACATTTGAAATATATGCAACTTGTGTAATTCCAATCAGTGCCTTCTTTGCATCAAGTCTTTGGTTTGGAAACACTGCTTACTTGCATATTTCAGTGGCGTTCATCCAAATGCTTAAAGCTCTAATGCCAGTGGCTACTTTTATCATGGCTGTATTGTGTGGCACTGACAAACCAAGGTGCGATGTGTTCACAAACATGTTGCTGGTCAGTGTTGGAGTTGTCATTTCCTCATACGGGGAGATTCATTTTAATGTAGTTGGTACAGTGTACCAGGTTACAGGCATCTTTGCAGAAGCTCTTAGACTGGTCTTAACACAAGTCCTTCTACAGAAGAAAGGCTTGACTCTAAATCCGATCACCAGCTTGTACTATATCGCCCCATGCAGCTTTGTCTTCCTGTTTGTGCCTTGGTTGTTACTTGAGAAGTCTGCAATAGAATATTCACAGTTTCAGTTCAACTTCTGGATCTTTTTCTCCAATGCTCTTTGTGCTTTGGCGTTGAACTTCTCCATATTCTTAGTGATTGGTAGAACTGGAGCAGTTACCATCCGGGTTGCTGGTGTTCTGAAAGACTGGATATTGATTGCCCTTTCAACTGTTATATTTCCAGAGTCTATTATAACCAGGCTGAACATAATCGGTTATGCCATAGCACTGTGTGGGGTTGTCATGTACAATTACATAAAGGTTAAGGATGTTCGTGCATCTCAGCTACCTTCTGAAAGCATTCCCGAGAGAATTTCGAAGGATTGGAAGATGGAGAAAAAGTCCTCTGATATTTTTATCCCTGGAGGGACTGTTTCAGCCTCTGATGATGTTGATGAAGAAACACCCTTAACTCAATCAACAAGGTTGTCTCACATTGGACGAACACAGGCCGGCAACTATGCTGCATGA

Protein Analysis

373

Amino Acids

41.54

Weight (kDa)

9.09

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 14 - 300 6.1e-24 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 842
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 695
AcsI RAATTY 1 cut(s) 960
AdeI CACNNNGTG 1 cut(s) 881
AfaI GTAC 5 cut(s) 86, 484, 491, 590, 896
AfiI CCNNNNNNNGG 1 cut(s) 456
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 6 cut(s) 118, 199, 230, 679, 724, 816
AhlI ACTAGT 1 cut(s) 169
AjnI CCWGG 3 cut(s) 492, 845, 1009
AluBI AGCT 6 cut(s) 209, 341, 518, 585, 609, 934
AluI AGCT 6 cut(s) 209, 341, 518, 585, 609, 934
Alw26I GTCTC 2 cut(s) 108, 1083
AlwI GGATC 1 cut(s) 695
AlwNI CAGNNNCTG 1 cut(s) 1031
Ama87I CYCGRG 1 cut(s) 953
AoxI GGCC 1 cut(s) 1098
ApeKI GCWGC 2 cut(s) 606, 1112
ApoI RAATTY 1 cut(s) 960
Asp700I GAANNNNTTC 2 cut(s) 113, 948
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 1 cut(s) 571
AsuII TTCGAA 1 cut(s) 965
AvaI CYCGRG 1 cut(s) 953
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BbsI GAAGAC 1 cut(s) 607
BbvI GCAGC 2 cut(s) 618, 1099
BccI CCATC 3 cut(s) 140, 776, 973
BciT130I CCWGG 3 cut(s) 494, 847, 1011
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 108, 1083
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 548
BisI GCNGC 2 cut(s) 607, 1113
BlsI GCNGC 2 cut(s) 608, 1114
Bme1390I CCNGG 4 cut(s) 494, 773, 847, 1011
BmeT110I CYCGRG 1 cut(s) 953
BmrFI CCNGG 4 cut(s) 494, 773, 847, 1011
BmsI GCATC 3 cut(s) 281, 513, 935
BpiI GAAGAC 1 cut(s) 607
BpmI CTGGAG 2 cut(s) 777, 1032
Bpu14I TTCGAA 1 cut(s) 965
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 773
BsaJI CCNNGG 3 cut(s) 395, 629, 1009
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 4 cut(s) 974, 1004, 1005, 1035
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse118I RCCGGY 1 cut(s) 1100
Bse1I ACTGG 4 cut(s) 350, 531, 760, 800
BseBI CCWGG 3 cut(s) 494, 847, 1011
BseDI CCNNGG 3 cut(s) 395, 629, 1009
BseGI GGATG 3 cut(s) 324, 768, 922
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 944
BseNI ACTGG 4 cut(s) 350, 531, 760, 800
BseXI GCAGC 2 cut(s) 618, 1099
BshFI GGCC 1 cut(s) 1100
BsiHKCI CYCGRG 1 cut(s) 953
BsiSI CCGG 3 cut(s) 72, 772, 1101
BslFI GGGAC 1 cut(s) 1030
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 2 cut(s) 108, 1083
BsmFI GGGAC 1 cut(s) 1030
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 1 cut(s) 1100
BsoBI CYCGRG 1 cut(s) 953
Bsp119I TTCGAA 1 cut(s) 965
Bsp1407I TGTACA 2 cut(s) 84, 894
Bsp143I GATC 3 cut(s) 12, 576, 687
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 1100
BspCNI CTCAG 1 cut(s) 943
BspPI GGATC 1 cut(s) 695
BspT104I TTCGAA 1 cut(s) 965
BsrFI RCCGGY 1 cut(s) 1100
BsrGI TGTACA 2 cut(s) 84, 894
BsrI ACTGG 4 cut(s) 350, 531, 760, 800
BssAI RCCGGY 1 cut(s) 1100
BssECI CCNNGG 3 cut(s) 395, 629, 1009
BssMI GATC 3 cut(s) 12, 576, 687
BssT1I CCWWGG 2 cut(s) 395, 629
Bst2UI CCWGG 3 cut(s) 494, 847, 1011
Bst4CI ACNGT 5 cut(s) 487, 669, 820, 879, 1021
BstAUI TGTACA 2 cut(s) 84, 894
BstBI TTCGAA 1 cut(s) 965
BstC8I GCNNGC 1 cut(s) 1102
BstDEI CTNAG 3 cut(s) 521, 739, 930
BstF5I GGATG 3 cut(s) 324, 768, 922
BstKTI GATC 3 cut(s) 15, 579, 690
BstMAI GTCTC 2 cut(s) 108, 1083
BstMBI GATC 3 cut(s) 12, 576, 687
BstMWI GCNNNNNNNGC 2 cut(s) 269, 710
BstNI CCWGG 3 cut(s) 494, 847, 1011
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 4 cut(s) 492, 771, 845, 1009
BstSFI CTRYAG 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 618, 1099
BstV2I GAAGAC 1 cut(s) 607
BstX2I RGATCY 1 cut(s) 687
BstYI RGATCY 1 cut(s) 687
BsuRI GGCC 1 cut(s) 1100
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 3 cut(s) 324, 768, 922
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 8 cut(s) 265, 294, 321, 357, 384, 436, 492, 875
Cac8I GCNNGC 1 cut(s) 1102
CaiI CAGNNNCTG 1 cut(s) 1031
Cfr10I RCCGGY 1 cut(s) 1100
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 5 cut(s) 85, 483, 490, 589, 895
CviAII CATG 5 cut(s) 367, 418, 603, 892, 1116
CviQI GTAC 5 cut(s) 85, 483, 490, 589, 895
DdeI CTNAG 3 cut(s) 521, 739, 930
DpnI GATC 3 cut(s) 14, 578, 689
DpnII GATC 3 cut(s) 12, 576, 687
DraIII CACNNNGTG 1 cut(s) 881
Eco130I CCWWGG 2 cut(s) 395, 629
Eco88I CYCGRG 1 cut(s) 953
EcoRII CCWGG 3 cut(s) 492, 845, 1009
EcoT14I CCWWGG 2 cut(s) 395, 629
ErhI CCWWGG 2 cut(s) 395, 629
FaeI CATG 5 cut(s) 370, 421, 606, 895, 1119
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 1 cut(s) 1030
FatI CATG 5 cut(s) 366, 417, 602, 891, 1115
FauNDI CATATG 1 cut(s) 153
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 607, 1113
FokI GGATG 3 cut(s) 311, 755, 929
Fsp4HI GCNGC 2 cut(s) 607, 1113
FspBI CTAG 1 cut(s) 170
GluI GCNGC 2 cut(s) 607, 1113
GsuI CTGGAG 2 cut(s) 777, 1032
HaeIII GGCC 1 cut(s) 1100
HapII CCGG 3 cut(s) 72, 772, 1101
Hin1II CATG 5 cut(s) 370, 421, 606, 895, 1119
HinfI GANTC 4 cut(s) 148, 463, 565, 833
HpaII CCGG 3 cut(s) 72, 772, 1101
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 2 cut(s) 411, 490
Hpy188I TCNGA 6 cut(s) 108, 576, 789, 943, 997, 1033
Hpy188III TCNNGA 4 cut(s) 165, 685, 830, 953
Hpy8I GTNNAC 2 cut(s) 411, 490
HpyAV CCTTC 4 cut(s) 274, 554, 948, 961
HpyCH4III ACNGT 5 cut(s) 487, 669, 820, 879, 1021
HpyCH4V TGCA 8 cut(s) 239, 272, 307, 512, 606, 653, 926, 1115
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 710
HpyF3I CTNAG 3 cut(s) 521, 739, 930
Hsp92II CATG 5 cut(s) 370, 421, 606, 895, 1119
KroI GCCGGC 1 cut(s) 1100
KroNI GCCGGC 1 cut(s) 1102
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 3 cut(s) 12, 576, 687
LmnI GCTCC 2 cut(s) 214, 758
Lsp1109I GCAGC 2 cut(s) 618, 1099
LweI GCATC 3 cut(s) 281, 513, 935
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 3 cut(s) 496, 636, 763
MalI GATC 3 cut(s) 14, 578, 689
MboI GATC 3 cut(s) 12, 576, 687
MboII GAAGA 5 cut(s) 173, 565, 607, 988, 1058
MflI RGATCY 1 cut(s) 687
MluCI AATT 4 cut(s) 118, 249, 898, 960
MlyI GAGTC 2 cut(s) 559, 842
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 4 cut(s) 460, 1003, 1007, 1039
MroNI GCCGGC 1 cut(s) 1100
MroXI GAANNNNTTC 2 cut(s) 113, 948
MseI TTAA 5 cut(s) 336, 471, 533, 912, 1058
MslI CAYNNNNRTG 3 cut(s) 329, 416, 471
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 3 cut(s) 72, 772, 1101
MspR9I CCNGG 4 cut(s) 494, 773, 847, 1011
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 3 cut(s) 494, 847, 1011
MwoI GCNNNNNNNGC 2 cut(s) 269, 710
NaeI GCCGGC 1 cut(s) 1102
NciI CCSGG 1 cut(s) 773
NdeI CATATG 1 cut(s) 153
NdeII GATC 3 cut(s) 12, 576, 687
NgoMIV GCCGGC 1 cut(s) 1100
NlaIII CATG 5 cut(s) 370, 421, 606, 895, 1119
NspI RCATGY 1 cut(s) 421
NspV TTCGAA 1 cut(s) 965
PciI ACATGT 1 cut(s) 417
PctI GAATGC 1 cut(s) 948
PdiI GCCGGC 1 cut(s) 1102
PdmI GAANNNNTTC 2 cut(s) 113, 948
PfeI GAWTC 2 cut(s) 148, 463
PkrI GCNGC 2 cut(s) 608, 1114
PleI GAGTC 2 cut(s) 559, 841
PpsI GAGTC 2 cut(s) 559, 841
PscI ACATGT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 842
Psp6I CCWGG 3 cut(s) 492, 845, 1009
PspGI CCWGG 3 cut(s) 492, 845, 1009
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 1 cut(s) 687
RsaI GTAC 5 cut(s) 86, 484, 491, 590, 896
RsaNI GTAC 5 cut(s) 85, 483, 490, 589, 895
RseI CAYNNNNRTG 3 cut(s) 329, 416, 471
SaqAI TTAA 5 cut(s) 336, 471, 533, 912, 1058
SatI GCNGC 2 cut(s) 607, 1113
Sau3AI GATC 3 cut(s) 12, 576, 687
SchI GAGTC 2 cut(s) 559, 842
ScrFI CCNGG 4 cut(s) 494, 773, 847, 1011
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 3 cut(s) 281, 513, 935
SfcI CTRYAG 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 965
SmiMI CAYNNNNRTG 3 cut(s) 329, 416, 471
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SpeI ACTAGT 1 cut(s) 169
Sse9I AATT 4 cut(s) 118, 249, 898, 960
SsiI CCGC 1 cut(s) 23
SspI AATATT 1 cut(s) 662
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 4 cut(s) 492, 771, 845, 1009
StyI CCWWGG 2 cut(s) 395, 629
TaaI ACNGT 5 cut(s) 487, 669, 820, 879, 1021
TaqI TCGA 1 cut(s) 965
TasI AATT 4 cut(s) 118, 249, 898, 960
TatI WGTACW 3 cut(s) 84, 588, 894
TfiI GAWTC 2 cut(s) 148, 463
Tru1I TTAA 5 cut(s) 336, 471, 533, 912, 1058
Tru9I TTAA 5 cut(s) 336, 471, 533, 912, 1058
TscAI CASTG 8 cut(s) 265, 301, 321, 357, 391, 436, 492, 882
TseI GCWGC 2 cut(s) 606, 1112
TspDTI ATGAA 5 cut(s) 40, 140, 313, 455, 1059
TspRI CASTG 8 cut(s) 265, 301, 321, 357, 391, 436, 492, 882
XapI RAATTY 1 cut(s) 960
XceI RCATGY 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 113, 948
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.