Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014605

Physical Location & Seq

Genomic Coordinates Forward (+)

10994192 .. 10995870

Gene Structure 1679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAAGCCTAGCATAAATGTGGTGTTAGTTTCTCTTCTTCTGCTCATTGACGTTATTAGCGTTTGTCATGGCGGTGGTGGTGGCCGTGACGGTGGGCTGAGTCCGGTGTTCTATGACAAGAGTTGCCCTCAAATTGAAAGAATAGTGAGGAACATCACATGGAGCATGGTTGCAGAAAATTCTACCATGGCACCGAAGCTTCTAAGGATGCACTATCATGACTGTTTTGTTAGGGGATGTGATGCATCATTATTGCTAGATTCAATCAGCGGCAACCCGGCGGAGAAGGAAGCAATACAAAACAGTAATATTAGAGGTTATGAGGTTATTGATGAAATAAAAACCAGATTAGAAGAAAAGTGTCCCGGCATCGTCTCATGTGCTGATATTCTTGCCTTGGTAGCCAGAGATGCTGTCTCTTATCAATTTGGAAGGCCCATGTGGCAGGTTTTAACCGGGAGAAAAGATGGAAGAGTCTCCCTTTCGTCAGAGGCTTCAATAAACTTACCCTCCGCAGGTGCAAACTTCACCACACTCAACCAGCAATTTATTGGTTTGGGGCTGAACATCATAGATCTTGTGGCTTTATCAGGAGCACATACAATTGGAGTGGCACATTGCGCGGTATTTCAAAGGAGACTGAACGTAACCGGAAAGGGTGACATAGACCCTACACTTGATCCAGAATACGCAGAGTTCTTGAGAACACAATGCACCAACCCGGGCGTCGCGGTGGCACTGGACGCCAACAGCTCAGCTTCCTTTGACAGCCATTACTTTGCGGGGTTGAGGCAAAACAAAGGCCTCTTGAGATCAGATGCTGCGCTGCTCACTGACCGGCGTTCGTCTCACATTGTAAGACGTTTTGAGAAGTTCCCTGTTTTCATGACCTACTTTGGGAATTCAATGAAGAAAATGGGTTCCATTGGAGTCATAACGCGAGAAGAGGATGGTGGAGAGATTAGAAAGAATTGCAGGGTTGTTAATGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

332

Amino Acids

36.11

Weight (kDa)

8.06

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	49 - 290	1.7e-77	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39040
fragaria_vesca	FvH4_4g16970
malus_domestica	MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica	Prupe.1G143900_v2.0.a1
pyrus_communis	pycom13g15120
rosa_chinensis	RchiOBHm_Chr4g0420641
rosa_laevigata	RLG00000007745
rosa_multiflora	Rmu_sc0011080.1_g000008
rosa_roxburghii	Rroxscaffold_5G00363180
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana	Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	2 cut(s)	436, 506
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	3 cut(s)	623, 731, 940
AciI	CCGC	7 cut(s)	72, 270, 281, 513, 623, 731, 782
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	178, 901
AcyI	GRCGYC	2 cut(s)	726, 744
AfiI	CCNNNNNNNGG	2 cut(s)	515, 897
AgsI	TTSAA	5 cut(s)	137, 264, 498, 632, 906
AluBI	AGCT	3 cut(s)	199, 753, 758
AluI	AGCT	3 cut(s)	199, 753, 758
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	5 cut(s)	379, 421, 481, 631, 852
AlwI	GGATC	1 cut(s)	674
AlwNI	CAGNNNCTG	1 cut(s)	821
Ama87I	CYCGRG	1 cut(s)	721
AoxI	GGCC	3 cut(s)	82, 434, 802
ApeKI	GCWGC	2 cut(s)	821, 826
ApoI	RAATTY	2 cut(s)	178, 901
AspLEI	GCGC	2 cut(s)	623, 826
AspS9I	GGNCC	1 cut(s)	435
AsuC2I	CCSGG	5 cut(s)	278, 366, 457, 722, 723
AsuHPI	GGTGA	2 cut(s)	520, 671
AvaI	CYCGRG	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	808, 813
BccI	CCATC	2 cut(s)	461, 944
BceAI	ACGGC	1 cut(s)	69
BcnI	CCSGG	5 cut(s)	278, 366, 457, 722, 723
BcoDI	GTCTC	5 cut(s)	379, 421, 481, 631, 852
BfaI	CTAG	2 cut(s)	9, 257
BfuAI	ACCTGC	2 cut(s)	436, 506
BglI	GCCNNNNNGGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	3 cut(s)	271, 822, 827
BlpI	GCTNAGC	1 cut(s)	754
BlsI	GCNGC	3 cut(s)	272, 823, 828
Bme1390I	CCNGG	5 cut(s)	278, 366, 457, 722, 723
BmeT110I	CYCGRG	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	192, 922
BmrFI	CCNGG	5 cut(s)	278, 366, 457, 722, 723
BmsI	GCATC	6 cut(s)	198, 232, 254, 378, 400, 808
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
Bpu1102I	GCTNAGC	1 cut(s)	754
BpuEI	CTTGAG	2 cut(s)	721, 829
BpuMI	CCSGG	5 cut(s)	278, 366, 457, 722, 723
BsaHI	GRCGYC	2 cut(s)	726, 744
BsaJI	CCNNGG	3 cut(s)	186, 396, 721
BsaWI	WCCGGW	2 cut(s)	103, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 897
Bse118I	RCCGGY	1 cut(s)	837
Bse1I	ACTGG	1 cut(s)	744
Bse3DI	GCAATG	1 cut(s)	616
BseDI	CCNNGG	3 cut(s)	186, 396, 721
BseGI	GGATG	3 cut(s)	213, 242, 955
BseLI	CCNNNNNNNGG	2 cut(s)	515, 897
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	89, 768
BseNI	ACTGG	1 cut(s)	744
BseXI	GCAGC	2 cut(s)	808, 813
Bsh1236I	CGCG	3 cut(s)	623, 731, 940
BshFI	GGCC	3 cut(s)	84, 436, 804
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	598
BsiHKCI	CYCGRG	1 cut(s)	721
BsiSI	CCGG	7 cut(s)	104, 278, 366, 456, 651, 722, 838
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	515, 897
BsmAI	GTCTC	5 cut(s)	379, 421, 481, 631, 852
BsmBI	CGTCTC	2 cut(s)	379, 852
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	84, 436, 804
BsoBI	CYCGRG	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	574, 679, 812
Bsp1720I	GCTNAGC	1 cut(s)	754
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	7 cut(s)	72, 270, 281, 513, 623, 731, 782
BspANI	GGCC	3 cut(s)	84, 436, 804
BspCNI	CTCAG	2 cut(s)	90, 767
BspFNI	CGCG	3 cut(s)	623, 731, 940
BspHI	TCATGA	2 cut(s)	217, 885
BspLI	GGNNCC	2 cut(s)	192, 922
BspMI	ACCTGC	2 cut(s)	436, 506
BspPI	GGATC	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	616
BsrFI	RCCGGY	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	744
BssAI	RCCGGY	1 cut(s)	837
BssECI	CCNNGG	3 cut(s)	186, 396, 721
BssMI	GATC	3 cut(s)	574, 679, 812
BssNI	GRCGYC	2 cut(s)	726, 744
BssT1I	CCWWGG	2 cut(s)	186, 396
Bst4CI	ACNGT	3 cut(s)	92, 224, 305
Bst6I	CTCTTC	3 cut(s)	39, 466, 939
BstACI	GRCGYC	2 cut(s)	726, 744
BstDEI	CTNAG	3 cut(s)	98, 203, 754
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	213, 242, 955
BstFNI	CGCG	3 cut(s)	623, 731, 940
BstHHI	GCGC	2 cut(s)	623, 826
BstKTI	GATC	3 cut(s)	577, 682, 815
BstMAI	GTCTC	5 cut(s)	379, 421, 481, 631, 852
BstMBI	GATC	3 cut(s)	574, 679, 812
BstMWI	GCNNNNNNNGC	5 cut(s)	401, 410, 442, 620, 743
BstSCI	CCNGG	5 cut(s)	276, 364, 455, 720, 721
BstUI	CGCG	3 cut(s)	623, 731, 940
BstV1I	GCAGC	2 cut(s)	808, 813
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	84, 436, 804
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	213, 242, 955
BtsIMutI	CAGTG	2 cut(s)	737, 831
BveI	ACCTGC	2 cut(s)	436, 506
CaiI	CAGNNNCTG	1 cut(s)	821
CciI	TCATGA	2 cut(s)	217, 885
CfoI	GCGC	2 cut(s)	623, 826
Cfr10I	RCCGGY	1 cut(s)	837
Cfr13I	GGNCC	1 cut(s)	435
Cfr9I	CCCGGG	1 cut(s)	721
CseI	GACGC	2 cut(s)	715, 752
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	8 cut(s)	68, 159, 166, 187, 218, 378, 439, 886
DdeI	CTNAG	3 cut(s)	98, 203, 754
DpnI	GATC	3 cut(s)	576, 681, 814
DpnII	GATC	3 cut(s)	574, 679, 812
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	3 cut(s)	39, 466, 939
EarI	CTCTTC	3 cut(s)	39, 466, 939
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	186, 396
Eco147I	AGGCCT	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	901
EcoT14I	CCWWGG	2 cut(s)	186, 396
EcoT22I	ATGCAT	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	186, 396
Esp3I	CGTCTC	2 cut(s)	379, 852
FaeI	CATG	8 cut(s)	71, 162, 169, 190, 221, 381, 442, 889
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	8 cut(s)	67, 158, 165, 186, 217, 377, 438, 885
FauI	CCCGC	1 cut(s)	775
Fnu4HI	GCNGC	3 cut(s)	271, 822, 827
FokI	GGATG	3 cut(s)	220, 249, 962
Fsp4HI	GCNGC	3 cut(s)	271, 822, 827
FspBI	CTAG	2 cut(s)	9, 257
GlaI	GCGC	2 cut(s)	622, 825
GluI	GCNGC	3 cut(s)	271, 822, 827
HaeIII	GGCC	3 cut(s)	84, 436, 804
HapII	CCGG	7 cut(s)	104, 278, 366, 456, 651, 722, 838
HgaI	GACGC	2 cut(s)	715, 752
HhaI	GCGC	2 cut(s)	623, 826
Hin1I	GRCGYC	2 cut(s)	726, 744
Hin1II	CATG	8 cut(s)	71, 162, 169, 190, 221, 381, 442, 889
Hin6I	GCGC	2 cut(s)	621, 824
HinP1I	GCGC	2 cut(s)	621, 824
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	4 cut(s)	100, 260, 474, 930
HpaII	CCGG	7 cut(s)	104, 278, 366, 456, 651, 722, 838
HphI	GGTGA	2 cut(s)	520, 671
Hpy188I	TCNGA	2 cut(s)	490, 817
Hpy188III	TCNNGA	6 cut(s)	218, 591, 683, 700, 808, 886
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	2 cut(s)	280, 426
HpyCH4III	ACNGT	3 cut(s)	92, 224, 305
HpyCH4IV	ACGT	3 cut(s)	51, 645, 862
HpyCH4V	TGCA	6 cut(s)	173, 211, 245, 521, 714, 975
HpyF10VI	GCNNNNNNNGC	5 cut(s)	401, 410, 442, 620, 743
HpyF3I	CTNAG	3 cut(s)	98, 203, 754
HpySE526I	ACGT	3 cut(s)	51, 645, 862
Hsp92I	GRCGYC	2 cut(s)	726, 744
Hsp92II	CATG	8 cut(s)	71, 162, 169, 190, 221, 381, 442, 889
HspAI	GCGC	2 cut(s)	621, 824
Kzo9I	GATC	3 cut(s)	574, 679, 812
LmnI	GCTCC	2 cut(s)	162, 593
Lsp1109I	GCAGC	2 cut(s)	808, 813
LweI	GCATC	6 cut(s)	198, 232, 254, 378, 400, 808
MaeI	CTAG	2 cut(s)	9, 257
MaeII	ACGT	3 cut(s)	51, 645, 862
MaeIII	GTNAC	3 cut(s)	86, 646, 659
MalI	GATC	3 cut(s)	576, 681, 814
MboI	GATC	3 cut(s)	574, 679, 812
MboII	GAAGA	6 cut(s)	26, 29, 365, 483, 922, 956
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	8 cut(s)	132, 178, 425, 545, 603, 901, 970, 991
MlyI	GAGTC	3 cut(s)	109, 483, 939
MnlI	CCTC	9 cut(s)	138, 141, 308, 316, 484, 520, 783, 815, 940
Mph1103I	ATGCAT	1 cut(s)	247
MseI	TTAA	3 cut(s)	452, 984, 994
MslI	CAYNNNNRTG	3 cut(s)	17, 72, 216
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	7 cut(s)	104, 278, 366, 456, 651, 722, 838
MspR9I	CCNGG	5 cut(s)	278, 366, 457, 722, 723
MunI	CAATTG	1 cut(s)	603
MvnI	CGCG	3 cut(s)	623, 731, 940
MwoI	GCNNNNNNNGC	5 cut(s)	401, 410, 442, 620, 743
NciI	CCSGG	5 cut(s)	278, 366, 457, 722, 723
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	574, 679, 812
NlaIII	CATG	8 cut(s)	71, 162, 169, 190, 221, 381, 442, 889
NlaIV	GGNNCC	2 cut(s)	192, 922
NmuCI	GTSAC	2 cut(s)	86, 659
NsiI	ATGCAT	1 cut(s)	247
PagI	TCATGA	2 cut(s)	217, 885
PaqCI	CACCTGC	1 cut(s)	506
PceI	AGGCCT	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	272, 823, 828
PleI	GAGTC	3 cut(s)	108, 482, 938
PpsI	GAGTC	3 cut(s)	108, 482, 938
PspN4I	GGNNCC	2 cut(s)	192, 922
PspPI	GGNCC	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	1 cut(s)	574
RseI	CAYNNNNRTG	3 cut(s)	17, 72, 216
SaqAI	TTAA	3 cut(s)	452, 984, 994
SatI	GCNGC	3 cut(s)	271, 822, 827
Sau3AI	GATC	3 cut(s)	574, 679, 812
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	3 cut(s)	109, 483, 939
ScrFI	CCNGG	5 cut(s)	278, 366, 457, 722, 723
SduI	GDGCHC	1 cut(s)	598
SfaNI	GCATC	6 cut(s)	198, 232, 254, 378, 400, 808
SmaI	CCCGGG	1 cut(s)	723
SmiMI	CAYNNNNRTG	3 cut(s)	17, 72, 216
SmlI	CTYRAG	2 cut(s)	700, 808
SmoI	CTYRAG	2 cut(s)	700, 808
Sse9I	AATT	8 cut(s)	132, 178, 425, 545, 603, 901, 970, 991
SseBI	AGGCCT	1 cut(s)	804
SsiI	CCGC	7 cut(s)	72, 270, 281, 513, 623, 731, 782
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	2 cut(s)	9, 257
StuI	AGGCCT	1 cut(s)	804
StyD4I	CCNGG	5 cut(s)	276, 364, 455, 720, 721
StyI	CCWWGG	2 cut(s)	186, 396
TaaI	ACNGT	3 cut(s)	92, 224, 305
TaiI	ACGT	3 cut(s)	54, 648, 865
TasI	AATT	8 cut(s)	132, 178, 425, 545, 603, 901, 970, 991
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	452, 984, 994
Tru9I	TTAA	3 cut(s)	452, 984, 994
TscAI	CASTG	2 cut(s)	744, 838
TseFI	GTSAC	2 cut(s)	86, 659
TseI	GCWGC	2 cut(s)	821, 826
Tsp45I	GTSAC	2 cut(s)	86, 659
TspDTI	ATGAA	4 cut(s)	17, 348, 874, 923
TspMI	CCCGGG	1 cut(s)	721
TspRI	CASTG	2 cut(s)	744, 838
XapI	RAATTY	2 cut(s)	178, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmaI	CCCGGG	1 cut(s)	721
XspI	CTAG	2 cut(s)	9, 257
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.