Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0016944

Physical Location & Seq

Genomic Coordinates Forward (+)

14588093 .. 14589537

Gene Structure 1445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTCATGAACAGTAAAATAACGGAAATGCTCTTTTTTTTCTTCTCACTCCCAAGTTTTGTTGTTTGCTTGTCTTCCACTTCTTTCTTTGTTGGCTATGCGTCTATCATCGGTGCGACTGGGTTTTGCCGTTTGGTTTGCGCGTTGTCTGTCGCCACTCTCTGTTTCTCTCCAGGCTACGACGAGAATCGGCAGAATTTGATTTGGAGAATCGATTTTGTGTGGGCTATGGAGAAGGACGAGAATAAGAAGCAGAAGAAAAGCTCAATAGGGAACGCCGCAACGCAGTGGCAATGGCAGAGCATGGTGAAGAACTTGCAGCGGAGGAACCGAAGAAATTGGCATTTGGGTTTCGAATCGAATCCAACTACAGAGCATGCACCATCCCCTACAAATTCCCCTCCAACAGTCTCCGCAAGCCCACGCCCACTGAGCTCTCCTGGGTCGACCTCTTCTACAACTCCACCCCCTCATTCAACAAACGAGCTCAATCCGACACTTTGGTTCCCGCTCCGGCCAGAGCTGAAAAATTTGCTCAAAGGTTTTTTTAATTATTTGAGAGAAGTTTCTTATGTGTCTCAGTTCTTAGCTTGCTGGGGGACATGGTGGTGGGTTTGCTTGCTGCCATTGGTGCACTGTCTAGAGCTTGATTCAATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

221

Amino Acids

25.13

Weight (kDa)

8.89

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016944)

Species	Orthologous Gene IDs
malus_domestica	MD05G1006700.v1.1
pyrus_communis	pycom13g18460 pycom16g15400
rosa_chinensis	RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata	RLG00000015986
rosa_multiflora	Rmu_co8445899.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152310
rosa_samantha	Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	446
AccII	CGCG	1 cut(s)	143
AciI	CCGC	4 cut(s)	279, 322, 414, 509
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	3 cut(s)	196, 394, 529
AgsI	TTSAA	2 cut(s)	477, 654
AjnI	CCWGG	2 cut(s)	172, 439
AluBI	AGCT	6 cut(s)	264, 435, 487, 523, 590, 646
AluI	AGCT	6 cut(s)	264, 435, 487, 523, 590, 646
Alw21I	GWGCWC	3 cut(s)	437, 489, 636
Alw26I	GTCTC	2 cut(s)	415, 582
Alw44I	GTGCAC	1 cut(s)	632
AoxI	GGCC	1 cut(s)	515
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	2 cut(s)	319, 622
ApoI	RAATTY	3 cut(s)	196, 394, 529
AspLEI	GCGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	636
BanII	GRGCYC	2 cut(s)	437, 489
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	3 cut(s)	437, 489, 636
BbvI	GCAGC	2 cut(s)	331, 609
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	2 cut(s)	174, 441
BcoDI	GTCTC	2 cut(s)	415, 582
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	3 cut(s)	279, 320, 623
BlsI	GCNGC	3 cut(s)	280, 321, 624
Bme1390I	CCNGG	2 cut(s)	174, 441
BmiI	GGNNCC	2 cut(s)	329, 506
BmrFI	CCNGG	2 cut(s)	174, 441
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	174, 441
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	422, 593
BseNI	ACTGG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	636
BseXI	GCAGC	2 cut(s)	331, 609
BseYI	CCCAGC	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	517
BshVI	ATCGAT	1 cut(s)	213
BsiHKAI	GWGCWC	3 cut(s)	437, 489, 636
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	613
BsmAI	GTCTC	2 cut(s)	415, 582
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	517
Bsp119I	TTCGAA	1 cut(s)	354
Bsp1286I	GDGCHC	3 cut(s)	437, 489, 636
BspACI	CCGC	4 cut(s)	279, 322, 414, 509
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	2 cut(s)	423, 592
BspDI	ATCGAT	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	329, 506
BspT104I	TTCGAA	1 cut(s)	354
BsrBI	CCGCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	440
Bst2UI	CCWGG	2 cut(s)	174, 441
Bst4CI	ACNGT	3 cut(s)	14, 409, 638
Bst6I	CTCTTC	1 cut(s)	457
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	378, 418, 592, 620
BstDEI	CTNAG	3 cut(s)	431, 579, 586
BstF5I	GGATG	1 cut(s)	383
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	143
BstMAI	GTCTC	2 cut(s)	415, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 631
BstNI	CCWGG	2 cut(s)	174, 441
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	172, 439
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	636
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	331, 609
BstV2I	GAAGAC	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	517
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	3 cut(s)	293, 428, 634
Cac8I	GCNNGC	4 cut(s)	378, 418, 592, 620
CciI	TCATGA	1 cut(s)	6
CfoI	GCGC	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	90
CviAII	CATG	4 cut(s)	7, 304, 377, 603
DdeI	CTNAG	3 cut(s)	431, 579, 586
EaeI	YGGCCR	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Ecl136II	GAGCTC	2 cut(s)	435, 487
Eco24I	GRGCYC	2 cut(s)	437, 489
Eco53kI	GAGCTC	2 cut(s)	435, 487
EcoICRI	GAGCTC	2 cut(s)	435, 487
EcoRII	CCWGG	2 cut(s)	172, 439
EcoT38I	GRGCYC	2 cut(s)	437, 489
FaeI	CATG	4 cut(s)	10, 307, 380, 606
FaiI	YATR	7 cut(s)	8, 99, 230, 305, 378, 573, 604
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	4 cut(s)	6, 303, 376, 602
FauI	CCCGC	1 cut(s)	516
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	3 cut(s)	279, 320, 623
FokI	GGATG	1 cut(s)	370
FriOI	GRGCYC	2 cut(s)	437, 489
Fsp4HI	GCNGC	3 cut(s)	279, 320, 623
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	3 cut(s)	279, 320, 623
GsaI	CCCAGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	10, 307, 380, 606
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	5 cut(s)	187, 210, 356, 361, 650
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	447, 634
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	2 cut(s)	7, 641
Hpy8I	GTNNAC	2 cut(s)	447, 634
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	3 cut(s)	14, 409, 638
HpyCH4V	TGCA	3 cut(s)	319, 380, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 631
HpyF3I	CTNAG	3 cut(s)	431, 579, 586
Hsp92II	CATG	4 cut(s)	10, 307, 380, 606
HspAI	GCGC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	516
LpnPI	CCDG	8 cut(s)	105, 159, 186, 426, 453, 527, 531, 580
Lsp1109I	GCAGC	2 cut(s)	331, 609
MaeI	CTAG	1 cut(s)	641
MbiI	CCGCTC	1 cut(s)	511
MboII	GAAGA	6 cut(s)	34, 66, 268, 322, 345, 444
MhlI	GDGCHC	3 cut(s)	437, 489, 636
MluCI	AATT	5 cut(s)	196, 337, 394, 529, 550
MmeI	TCCRAC	3 cut(s)	389, 428, 518
MnlI	CCTC	4 cut(s)	318, 411, 460, 480
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	607
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	174, 441
MvaI	CCWGG	2 cut(s)	174, 441
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	432, 631
NlaIII	CATG	4 cut(s)	10, 307, 380, 606
NlaIV	GGNNCC	2 cut(s)	329, 506
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	354
PaeI	GCATGC	1 cut(s)	380
PagI	TCATGA	1 cut(s)	6
PfeI	GAWTC	5 cut(s)	187, 210, 356, 361, 650
PkrI	GCNGC	3 cut(s)	280, 321, 624
Psp124BI	GAGCTC	2 cut(s)	437, 489
Psp6I	CCWGG	2 cut(s)	172, 439
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	2 cut(s)	172, 439
PspN4I	GGNNCC	2 cut(s)	329, 506
RseI	CAYNNNNRTG	1 cut(s)	607
SacI	GAGCTC	2 cut(s)	437, 489
SalI	GTCGAC	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	3 cut(s)	279, 320, 623
ScrFI	CCNGG	2 cut(s)	174, 441
SduI	GDGCHC	3 cut(s)	437, 489, 636
SetI	ASST	8 cut(s)	266, 437, 452, 489, 525, 544, 592, 648
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	607
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	5 cut(s)	196, 337, 394, 529, 550
SsiI	CCGC	4 cut(s)	279, 322, 414, 509
SspMI	CTAG	1 cut(s)	641
SstI	GAGCTC	2 cut(s)	437, 489
StyD4I	CCNGG	2 cut(s)	172, 439
TaaI	ACNGT	3 cut(s)	14, 409, 638
TaqI	TCGA	4 cut(s)	213, 354, 359, 446
TasI	AATT	5 cut(s)	196, 337, 394, 529, 550
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	5 cut(s)	187, 210, 356, 361, 650
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	3 cut(s)	293, 435, 641
TseI	GCWGC	2 cut(s)	319, 622
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	3 cut(s)	293, 435, 641
VneI	GTGCAC	1 cut(s)	632
XapI	RAATTY	3 cut(s)	196, 394, 529
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.