Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016944

Physical Location & Seq

Genomic Coordinates Forward (+)

2886929 .. 2888402

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG041400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGACCGGAAAACTGGAAGTCTCTCTGGACAAGCTCCCTATCAAGCGTCCAGACCTCATCGAAGAAAACGGCCTCGAACAATTTCCACCCGATGTAGGTTACGAGGAGAAGTGGGAGTCGCTGATACGGAGAATTGACTTCGCCTGGGAGGTGGAGAAGGACGAGGAGAAGAAGAAGAAGAAGAAGTGGTCCAGAGAGAGCTCGGCGGCGCAATGGGAGTTACAGAGCACGGTGGAGAATCTACACTTGCCTCATCAAGAGAGCTCTCCATCATTATCGTTCTCATCTACACTGCAAGTGGAAGCTAATGATGCAGTTACAGTAGTTAGAATGACCAGGCCGAGGCCATTTCCGATCCTAATGAAGCTCTCTCTGATCTTGCTGTACGTGTCTGCCCGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

134

Amino Acids

15.59

Weight (kDa)

5.96

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016944)

Species	Orthologous Gene IDs
malus_domestica	MD05G1006700.v1.1
pyrus_communis	pycom13g18460 pycom16g15400
rosa_chinensis	RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata	RLG00000015986
rosa_multiflora	Rmu_co8445899.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152310
rosa_samantha	Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	206, 397
AclWI	GGATC	1 cut(s)	349
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	95, 342
AflIII	ACRYGT	1 cut(s)	387
AjnI	CCWGG	2 cut(s)	143, 335
AluBI	AGCT	5 cut(s)	34, 201, 264, 305, 367
AluI	AGCT	5 cut(s)	34, 201, 264, 305, 367
Alw21I	GWGCWC	3 cut(s)	203, 230, 266
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	3 cut(s)	70, 338, 344
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	189
BanII	GRGCYC	2 cut(s)	203, 266
Bbv12I	GWGCWC	3 cut(s)	203, 230, 266
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	145, 337
BcoDI	GTCTC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	145, 337
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	145, 337
BmsI	GCATC	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	144, 341
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 342
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	145, 337
BseDI	CCNNGG	2 cut(s)	144, 341
BseLI	CCNNNNNNNGG	2 cut(s)	95, 342
BseMI	GCAATG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	119, 179
BshFI	GGCC	3 cut(s)	72, 340, 346
BsiHKAI	GWGCWC	3 cut(s)	203, 230, 266
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	95, 342
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	72, 340, 346
Bsp1286I	GDGCHC	3 cut(s)	203, 230, 266
Bsp143I	GATC	2 cut(s)	354, 375
BspACI	CCGC	2 cut(s)	206, 397
BspANI	GGCC	3 cut(s)	72, 340, 346
BspPI	GGATC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	144, 341
BssMI	GATC	2 cut(s)	354, 375
Bst2UI	CCWGG	2 cut(s)	145, 337
Bst4CI	ACNGT	2 cut(s)	232, 322
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	357, 378
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	354, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	2 cut(s)	145, 337
BstSCI	CCNGG	2 cut(s)	143, 335
BsuRI	GGCC	3 cut(s)	72, 340, 346
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	397
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	385
CviJI	RGCY	8 cut(s)	34, 72, 201, 264, 305, 340, 346, 367
CviKI_1	RGCY	8 cut(s)	34, 72, 201, 264, 305, 340, 346, 367
CviQI	GTAC	1 cut(s)	385
DpnI	GATC	2 cut(s)	356, 377
DpnII	GATC	2 cut(s)	354, 375
Ecl136II	GAGCTC	2 cut(s)	201, 264
Eco24I	GRGCYC	2 cut(s)	203, 266
Eco47I	GGWCC	1 cut(s)	189
Eco53kI	GAGCTC	2 cut(s)	201, 264
EcoICRI	GAGCTC	2 cut(s)	201, 264
EcoRII	CCWGG	2 cut(s)	143, 335
EcoT38I	GRGCYC	2 cut(s)	203, 266
Fnu4HI	GCNGC	1 cut(s)	207
FriOI	GRGCYC	2 cut(s)	203, 266
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	72, 340, 346
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	2 cut(s)	116, 238
HpaII	CCGG	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	354, 375
Hpy188III	TCNNGA	4 cut(s)	26, 50, 192, 257
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	232, 322
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	295, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	387
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	2 cut(s)	354, 375
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	8 cut(s)	11, 19, 63, 130, 157, 205, 322, 349
LweI	GCATC	1 cut(s)	301
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	98, 219, 316
MalI	GATC	2 cut(s)	356, 377
MboI	GATC	2 cut(s)	354, 375
MboII	GAAGA	6 cut(s)	74, 181, 184, 187, 190, 193
MhlI	GDGCHC	3 cut(s)	203, 230, 266
MluCI	AATT	2 cut(s)	80, 132
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	7 cut(s)	65, 83, 97, 142, 157, 261, 336
MroXI	GAANNNNTTC	1 cut(s)	81
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	145, 337
MvaI	CCWGG	2 cut(s)	145, 337
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	354, 375
NmeAIII	GCCGAG	2 cut(s)	182, 366
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	388
Psp124BI	GAGCTC	2 cut(s)	203, 266
Psp6I	CCWGG	2 cut(s)	143, 335
PspGI	CCWGG	2 cut(s)	143, 335
PspPI	GGNCC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SacI	GAGCTC	2 cut(s)	203, 266
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	354, 375
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	145, 337
SduI	GDGCHC	3 cut(s)	203, 230, 266
SetI	ASST	9 cut(s)	36, 57, 100, 153, 203, 266, 307, 369, 390
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	189
Sse9I	AATT	2 cut(s)	80, 132
SsiI	CCGC	2 cut(s)	206, 397
SstI	GAGCTC	2 cut(s)	203, 266
StyD4I	CCNGG	2 cut(s)	143, 335
TaaI	ACNGT	2 cut(s)	232, 322
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	60, 75
TasI	AATT	2 cut(s)	80, 132
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	238
TscAI	CASTG	1 cut(s)	297
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.