Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016944

Physical Location & Seq

Genomic Coordinates Reverse (-)

89313835 .. 89315809

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACCGGAAAACTGGAAGTCTCTCTGGACAAGCGCCCAGACCTCATCGAAGAAAACGGCCTCAAACGATTTCCACCCGATGTAGGTTACGAGGAGAAGCGGGAGTCACTGATACGGAGAATCGATTTCTCCTGGGCGGTGGAGAAGGATGAGGAGAAGAAGAAGAAGAAGAAGAAGCGGTCCAGACTCCAGAGAGAGCTCGGCGGCGCAATGGGAGTTACAGAGCATGGTGGAGAATCTACACTTGACTCATCAAGAGAGCTCTCCGTCATTGTCGATCTCATCTACACTGCAAGTCTCTCTTCTCTCAGCTCAGTGGAAGCTAATGATGCAGTTACAGTAGCTAGAATGACCCGGCCGAGGCCACCTCCTAATGAAGCTTTCTCTGATCTTGCTGTGTCTGCGGCCACTAAGCTACAGTGCTTCCGGCATGAATCAGTTGCATTTGGTAACCTGGATTCTAGTGTAAGTACAATTGTGGACTTTGGCATCACTCATCAGGTTGCAAGCCAAGTTGTTTGCTGGCTCCACGAAGAAGCTCGAATGGTTGGAATAAAAGCAAACCGGGACTTCCTATGTTTGTCTTTCGAGCTGGAGCAGGGCGAAACACTGAGCTTGGTGGCCCATGTGGATCCAGAAGATAGTGAAGGATGCATCTCGTGGTGGTTAATTGGTCATGGAGGATGGTTTTGTAGAAGAATAAAAACTCAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

238

Amino Acids

26.7

Weight (kDa)

5.77

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016944)

Species	Orthologous Gene IDs
malus_domestica	MD05G1006700.v1.1
pyrus_communis	pycom13g18460 pycom16g15400
rosa_chinensis	RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata	RLG00000015986
rosa_multiflora	Rmu_co8445899.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152310
rosa_samantha	Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	100, 137, 178, 204, 404
AclWI	GGATC	2 cut(s)	626, 639
AcoI	YGGCCR	2 cut(s)	356, 405
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	83, 360
AjnI	CCWGG	2 cut(s)	131, 453
Alw21I	GWGCWC	2 cut(s)	201, 264
Alw26I	GTCTC	2 cut(s)	25, 302
AlwI	GGATC	2 cut(s)	626, 639
AoxI	GGCC	5 cut(s)	58, 356, 362, 405, 621
AspLEI	GCGC	2 cut(s)	36, 209
AspS9I	GGNCC	2 cut(s)	180, 622
AsuC2I	CCSGG	2 cut(s)	355, 566
AvaII	GGWCC	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	631
BanII	GRGCYC	2 cut(s)	201, 264
BauI	CACGAG	1 cut(s)	658
Bbv12I	GWGCWC	2 cut(s)	201, 264
BccI	CCATC	1 cut(s)	678
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	133, 455
BcnI	CCSGG	2 cut(s)	355, 566
BcoDI	GTCTC	2 cut(s)	25, 302
BfaI	CTAG	2 cut(s)	345, 462
BfmI	CTRYAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	37
BisI	GCNGC	2 cut(s)	205, 405
BlsI	GCNGC	2 cut(s)	206, 406
Bme1390I	CCNGG	4 cut(s)	133, 355, 455, 566
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	180, 622
BmiI	GGNNCC	2 cut(s)	527, 633
BmrFI	CCNGG	4 cut(s)	133, 355, 455, 566
BmsI	GCATC	4 cut(s)	319, 498, 641, 663
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BpmI	CTGGAG	2 cut(s)	173, 614
BpuMI	CCSGG	2 cut(s)	355, 566
Bsa29I	ATCGAT	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	132, 359
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 360
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	133, 455
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	132, 359
BseGI	GGATG	3 cut(s)	154, 656, 689
BseLI	CCNNNNNNNGG	2 cut(s)	83, 360
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	3 cut(s)	322, 327, 602
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	107, 167
BseX3I	CGGCCG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	5 cut(s)	60, 358, 364, 407, 623
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	201, 264
BsiSI	CCGG	4 cut(s)	6, 355, 427, 565
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	2 cut(s)	83, 360
BsmAI	GTCTC	2 cut(s)	25, 302
BsmFI	GGGAC	1 cut(s)	581
BsnI	GGCC	5 cut(s)	60, 358, 364, 407, 623
Bsp1286I	GDGCHC	2 cut(s)	201, 264
Bsp143I	GATC	3 cut(s)	277, 388, 631
BspACI	CCGC	5 cut(s)	100, 137, 178, 204, 404
BspANI	GGCC	5 cut(s)	60, 358, 364, 407, 623
BspCNI	CTCAG	3 cut(s)	321, 326, 603
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	527, 633
BspPI	GGATC	2 cut(s)	626, 639
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	132, 359
BssMI	GATC	3 cut(s)	277, 388, 631
BssSI	CACGAG	1 cut(s)	658
Bst2BI	CACGAG	1 cut(s)	658
Bst2UI	CCWGG	2 cut(s)	133, 455
Bst4CI	ACNGT	2 cut(s)	340, 420
Bst6I	CTCTTC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	508, 524
BstDEI	CTNAG	4 cut(s)	308, 313, 411, 611
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	154, 656, 689
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	2 cut(s)	36, 209
BstKTI	GATC	3 cut(s)	280, 391, 634
BstMAI	GTCTC	2 cut(s)	25, 302
BstMBI	GATC	3 cut(s)	277, 388, 631
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 401
BstNI	CCWGG	2 cut(s)	133, 455
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	4 cut(s)	131, 353, 453, 564
BstSFI	CTRYAG	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BstZI	CGGCCG	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	5 cut(s)	60, 358, 364, 407, 623
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	154, 656, 689
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	5 cut(s)	107, 288, 321, 425, 608
Cac8I	GCNNGC	2 cut(s)	508, 524
CfoI	GCGC	2 cut(s)	36, 209
Cfr13I	GGNCC	2 cut(s)	180, 622
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	4 cut(s)	227, 431, 626, 677
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	4 cut(s)	308, 313, 411, 611
DpnI	GATC	3 cut(s)	279, 390, 633
DpnII	GATC	3 cut(s)	277, 388, 631
EaeI	YGGCCR	2 cut(s)	356, 405
EagI	CGGCCG	1 cut(s)	356
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Ecl136II	GAGCTC	2 cut(s)	199, 262
EclXI	CGGCCG	1 cut(s)	356
Eco24I	GRGCYC	2 cut(s)	201, 264
Eco47I	GGWCC	1 cut(s)	180
Eco52I	CGGCCG	1 cut(s)	356
Eco53kI	GAGCTC	2 cut(s)	199, 262
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	2 cut(s)	199, 262
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	131, 453
EcoT22I	ATGCAT	1 cut(s)	656
EcoT38I	GRGCYC	2 cut(s)	201, 264
FaeI	CATG	4 cut(s)	230, 434, 629, 680
FaiI	YATR	5 cut(s)	228, 432, 577, 627, 678
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	4 cut(s)	226, 430, 625, 676
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	205, 405
FokI	GGATG	3 cut(s)	161, 663, 696
FriOI	GRGCYC	2 cut(s)	201, 264
Fsp4HI	GCNGC	2 cut(s)	205, 405
FspBI	CTAG	2 cut(s)	345, 462
GlaI	GCGC	2 cut(s)	35, 208
GluI	GCNGC	2 cut(s)	205, 405
GsuI	CTGGAG	2 cut(s)	173, 614
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	5 cut(s)	60, 358, 364, 407, 623
HapII	CCGG	4 cut(s)	6, 355, 427, 565
HhaI	GCGC	2 cut(s)	36, 209
Hin1II	CATG	4 cut(s)	230, 434, 629, 680
Hin6I	GCGC	2 cut(s)	34, 207
HinP1I	GCGC	2 cut(s)	34, 207
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	7 cut(s)	104, 120, 186, 236, 248, 434, 458
HpaII	CCGG	4 cut(s)	6, 355, 427, 565
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	5 cut(s)	26, 183, 190, 255, 635
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	139, 641
HpyCH4III	ACNGT	2 cut(s)	340, 420
HpyCH4V	TGCA	5 cut(s)	293, 332, 443, 506, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 401
HpyF3I	CTNAG	4 cut(s)	308, 313, 411, 611
Hsp92II	CATG	4 cut(s)	230, 434, 629, 680
HspAI	GCGC	2 cut(s)	34, 207
Kzo9I	GATC	3 cut(s)	277, 388, 631
LmnI	GCTCC	2 cut(s)	531, 595
LweI	GCATC	4 cut(s)	319, 498, 641, 663
MaeI	CTAG	2 cut(s)	345, 462
MaeIII	GTNAC	5 cut(s)	86, 105, 217, 334, 449
MalI	GATC	3 cut(s)	279, 390, 633
MboI	GATC	3 cut(s)	277, 388, 631
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	201, 264
MluCI	AATT	2 cut(s)	474, 669
MlyI	GAGTC	3 cut(s)	113, 180, 242
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	7 cut(s)	53, 71, 85, 145, 354, 378, 674
Mph1103I	ATGCAT	1 cut(s)	656
MseI	TTAA	1 cut(s)	668
MspI	CCGG	4 cut(s)	6, 355, 427, 565
MspR9I	CCNGG	4 cut(s)	133, 355, 455, 566
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	133, 455
MwoI	GCNNNNNNNGC	2 cut(s)	329, 401
NciI	CCSGG	2 cut(s)	355, 566
NdeII	GATC	3 cut(s)	277, 388, 631
NlaIII	CATG	4 cut(s)	230, 434, 629, 680
NlaIV	GGNNCC	2 cut(s)	527, 633
NmeAIII	GCCGAG	2 cut(s)	180, 384
NmuCI	GTSAC	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	656
PfeI	GAWTC	4 cut(s)	120, 236, 434, 458
PkrI	GCNGC	2 cut(s)	206, 406
PleI	GAGTC	3 cut(s)	112, 180, 242
PpsI	GAGTC	3 cut(s)	112, 180, 242
Psp124BI	GAGCTC	2 cut(s)	201, 264
Psp6I	CCWGG	2 cut(s)	131, 453
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	2 cut(s)	131, 453
PspN4I	GGNNCC	2 cut(s)	527, 633
PspPI	GGNCC	2 cut(s)	180, 622
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SacI	GAGCTC	2 cut(s)	201, 264
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	2 cut(s)	205, 405
Sau3AI	GATC	3 cut(s)	277, 388, 631
Sau96I	GGNCC	2 cut(s)	180, 622
SchI	GAGTC	3 cut(s)	113, 180, 242
ScrFI	CCNGG	4 cut(s)	133, 355, 455, 566
SduI	GDGCHC	2 cut(s)	201, 264
SfaNI	GCATC	4 cut(s)	319, 498, 641, 663
SfcI	CTRYAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	2 cut(s)	474, 669
SsiI	CCGC	5 cut(s)	100, 137, 178, 204, 404
SspI	AATATT	1 cut(s)	713
SspMI	CTAG	2 cut(s)	345, 462
SstI	GAGCTC	2 cut(s)	201, 264
StyD4I	CCNGG	4 cut(s)	131, 353, 453, 564
TaaI	ACNGT	2 cut(s)	340, 420
TaqI	TCGA	5 cut(s)	48, 123, 276, 541, 588
TasI	AATT	2 cut(s)	474, 669
TatI	WGTACW	1 cut(s)	470
TauI	GCSGC	2 cut(s)	207, 407
TfiI	GAWTC	4 cut(s)	120, 236, 434, 458
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	5 cut(s)	114, 295, 321, 425, 615
TseFI	GTSAC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	390, 447
TspGWI	ACGGA	2 cut(s)	130, 256
TspRI	CASTG	5 cut(s)	114, 295, 321, 425, 615
VpaK11BI	GGWCC	1 cut(s)	180
XspI	CTAG	2 cut(s)	345, 462
Zsp2I	ATGCAT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.