Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016944

Physical Location & Seq

Genomic Coordinates Forward (+)

3011801 .. 3012699

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGACCGGAAAACTGGAAGTCTCTCTCGACAAGCTCCCTATCAAGCGCCCAGCCTCATCGAAGAAAACGACCTCGAACGATTTCCACTGTAACCATCCTTCCACCTTCTCACTTTCACTCTTTTTATTCGTTAATTCTGCTTATTTCCGAAGCAGAAGCTTTGATTTCGGCTTTTTCACACAGCGATGTAGGTTACGAGGGGAAGCGCGCGGGAGTCGATGGTACGGAGAGAATAGACTTCGCCTGGGCGGTGGAGAAGAAGCGGTCCAGAGAGAGCTCGGCGGCTTAATGGGAGTTACAGAGCATGGTGGAGAATCTACACTTGGCTCATCAAGAGAGCTCTCCGCCATTATCGATCTCATCTACACTGCAACTCTCTCTGATCTTGCTGTGTCTGCCGCCACTAAGCTGCAATGCTTCCGGGAAATCTGTTCAATGAACAGATACGACTGTGACTTGGCAGATCTTCCTGTAATAATCTTGCAGCAGGTTGCAAGCCAAGTTATTCGCTGGCTCCACGAAGAAGCTCGAAAGATTGGAAGAAAAGCGAACCGGGACTTGAATTCCTATGTTTGTCTTTCGAGCTGGAGCAGGGCGAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

202

Amino Acids

22.6

Weight (kDa)

9.25

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016944)

Species	Orthologous Gene IDs
malus_domestica	MD05G1006700.v1.1
pyrus_communis	pycom13g18460 pycom16g15400
rosa_chinensis	RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata	RLG00000015986
rosa_multiflora	Rmu_co8445899.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152310
rosa_samantha	Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	478
AccII	CGCG	2 cut(s)	208, 210
AciI	CCGC	6 cut(s)	210, 249, 263, 282, 345, 399
AcsI	RAATTY	1 cut(s)	562
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	435, 562
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	7 cut(s)	34, 159, 277, 340, 409, 527, 585
AluI	AGCT	7 cut(s)	34, 159, 277, 340, 409, 527, 585
Alw21I	GWGCWC	2 cut(s)	279, 342
Alw26I	GTCTC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	409, 484
ApoI	RAATTY	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	3 cut(s)	48, 208, 210
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	2 cut(s)	422, 554
AvaII	GGWCC	1 cut(s)	265
BaeI	ACNNNNGTAYC	2 cut(s)	436, 469
BanII	GRGCYC	2 cut(s)	279, 342
BarI	GAAGNNNNNNTAC	2 cut(s)	82, 114
Bbv12I	GWGCWC	2 cut(s)	279, 342
BbvI	GCAGC	2 cut(s)	396, 496
BccI	CCATC	2 cut(s)	102, 213
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	2 cut(s)	422, 554
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	478
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	4 cut(s)	283, 399, 410, 485
BlsI	GCNGC	4 cut(s)	284, 400, 411, 486
Bme1390I	CCNGG	3 cut(s)	245, 422, 554
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	515
BmrFI	CCNGG	3 cut(s)	245, 422, 554
BpuMI	CCSGG	2 cut(s)	422, 554
Bsa29I	ATCGAT	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	18
BsePI	GCGCGC	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	396, 496
BseYI	CCCAGC	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	208, 210
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	279, 342
BsiSI	CCGG	3 cut(s)	6, 421, 553
BslFI	GGGAC	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	279, 342
Bsp143I	GATC	3 cut(s)	355, 382, 463
BspACI	CCGC	6 cut(s)	210, 249, 263, 282, 345, 399
BspDI	ATCGAT	1 cut(s)	354
BspFNI	CGCG	2 cut(s)	208, 210
BspLI	GGNNCC	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	244
BssHII	GCGCGC	1 cut(s)	206
BssMI	GATC	3 cut(s)	355, 382, 463
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	89, 452
BstC8I	GCNNGC	3 cut(s)	208, 496, 512
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	2 cut(s)	208, 210
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	3 cut(s)	48, 208, 210
BstKTI	GATC	3 cut(s)	358, 385, 466
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	355, 382, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	243, 420, 552
BstUI	CGCG	2 cut(s)	208, 210
BstV1I	GCAGC	2 cut(s)	396, 496
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
Bsu15I	ATCGAT	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	3 cut(s)	85, 366, 601
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	3 cut(s)	208, 496, 512
CfoI	GCGC	3 cut(s)	48, 208, 210
Cfr13I	GGNCC	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	305
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	3 cut(s)	357, 384, 465
DpnII	GATC	3 cut(s)	355, 382, 463
EciI	GGCGGA	1 cut(s)	334
Ecl136II	GAGCTC	2 cut(s)	277, 340
Eco24I	GRGCYC	2 cut(s)	279, 342
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	2 cut(s)	277, 340
EcoICRI	GAGCTC	2 cut(s)	277, 340
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	243
EcoT38I	GRGCYC	2 cut(s)	279, 342
FaeI	CATG	1 cut(s)	308
FaiI	YATR	2 cut(s)	306, 570
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	1 cut(s)	304
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	4 cut(s)	283, 399, 410, 485
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	2 cut(s)	279, 342
Fsp4HI	GCNGC	4 cut(s)	283, 399, 410, 485
GlaI	GCGC	3 cut(s)	47, 207, 209
GluI	GCNGC	4 cut(s)	283, 399, 410, 485
GsaI	CCCAGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	49
HapII	CCGG	3 cut(s)	6, 421, 553
HhaI	GCGC	3 cut(s)	48, 208, 210
Hin1II	CATG	1 cut(s)	308
Hin6I	GCGC	3 cut(s)	46, 206, 208
HinP1I	GCGC	3 cut(s)	46, 206, 208
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	2 cut(s)	214, 314
HpaII	CCGG	3 cut(s)	6, 421, 553
Hpy188I	TCNGA	2 cut(s)	149, 382
Hpy188III	TCNNGA	3 cut(s)	26, 268, 333
HpyAV	CCTTC	2 cut(s)	108, 115
HpyCH4III	ACNGT	2 cut(s)	89, 452
HpyCH4V	TGCA	4 cut(s)	371, 412, 484, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	308
HspAI	GCGC	3 cut(s)	46, 206, 208
Kzo9I	GATC	3 cut(s)	355, 382, 463
LmnI	GCTCC	3 cut(s)	39, 519, 588
Lsp1109I	GCAGC	2 cut(s)	396, 496
MaeIII	GTNAC	4 cut(s)	89, 192, 295, 452
MalI	GATC	3 cut(s)	357, 384, 465
MboI	GATC	3 cut(s)	355, 382, 463
MboII	GAAGA	5 cut(s)	73, 269, 458, 533, 552
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	279, 342
MluCI	AATT	2 cut(s)	133, 562
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	64, 82, 191
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	132, 287
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	3 cut(s)	6, 421, 553
MspR9I	CCNGG	3 cut(s)	245, 422, 554
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	208, 210
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	2 cut(s)	422, 554
NdeII	GATC	3 cut(s)	355, 382, 463
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	1 cut(s)	515
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	452
PauI	GCGCGC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	4 cut(s)	284, 400, 411, 486
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp124BI	GAGCTC	2 cut(s)	279, 342
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	515
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	463
PteI	GCGCGC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	184
SacI	GAGCTC	2 cut(s)	279, 342
SaqAI	TTAA	2 cut(s)	132, 287
SatI	GCNGC	4 cut(s)	283, 399, 410, 485
Sau3AI	GATC	3 cut(s)	355, 382, 463
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	245, 422, 554
SduI	GDGCHC	2 cut(s)	279, 342
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	133, 562
SsiI	CCGC	6 cut(s)	210, 249, 263, 282, 345, 399
SstI	GAGCTC	2 cut(s)	279, 342
StyD4I	CCNGG	3 cut(s)	243, 420, 552
TaaI	ACNGT	2 cut(s)	89, 452
TaqI	TCGA	7 cut(s)	27, 59, 74, 217, 354, 529, 581
TasI	AATT	2 cut(s)	133, 562
TauI	GCSGC	2 cut(s)	285, 401
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	132, 287
Tru9I	TTAA	2 cut(s)	132, 287
TscAI	CASTG	2 cut(s)	92, 373
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	2 cut(s)	409, 484
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	92, 373
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.