Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8445899.1

Orthogroup ID

OG0016944

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 394

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8445899.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggacggaaaactggaaatctctctggacaagctcccaatcaagcgcctagacgtcatcgaagagaacggcctcgaacgatttccacccgatgtaggttacgaggagaagcgggagtcgctgattcggagaatcgatttcgcttgggcggtggagaaggacgacaagaacaacaagcagaagaagcgctccagagagacctccgccgcgcaatgggagtttcagagcatggtcgacaatctacagttggctcaccaagagctctctgtcattgtcgatctcatcaatactgta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

98

Amino Acids

11.47

Weight (kDa)

5.04

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016944)

Species	Orthologous Gene IDs
malus_domestica	MD05G1006700.v1.1
pyrus_communis	pycom13g18460 pycom16g15400
rosa_chinensis	RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata	RLG00000015986
rosa_multiflora	Rmu_co8445899.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152310
rosa_samantha	Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	209
AciI	CCGC	4 cut(s)	112, 149, 204, 207
AcyI	GRCGYC	1 cut(s)	54
AfeI	AGCGCT	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	95, 213
AluBI	AGCT	2 cut(s)	34, 262
AluI	AGCT	2 cut(s)	34, 262
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	191
Aor51HI	AGCGCT	1 cut(s)	188
AoxI	GGCC	1 cut(s)	70
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	3 cut(s)	48, 189, 211
AsuHPI	GGTGA	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	242
BfoI	RGCGCY	2 cut(s)	49, 190
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	175
Bsa29I	ATCGAT	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 213
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	218
BseCI	ATCGAT	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	95, 213
BseMI	GCAATG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	72
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	95, 213
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	4 cut(s)	112, 149, 204, 207
BspANI	GGCC	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	246, 292
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	2 cut(s)	49, 190
BstHHI	GCGC	3 cut(s)	48, 189, 211
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 184
BstSFI	CTRYAG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	135
CfoI	GCGC	3 cut(s)	48, 189, 211
ClaI	ATCGAT	1 cut(s)	135
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	4 cut(s)	34, 72, 251, 262
CviKI_1	RGCY	4 cut(s)	34, 72, 251, 262
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	1 cut(s)	232
FaiI	YATR	1 cut(s)	230
FatI	CATG	1 cut(s)	228
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	3 cut(s)	47, 188, 210
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	175
HaeII	RGCGCY	2 cut(s)	49, 190
HaeIII	GGCC	1 cut(s)	72
HhaI	GCGC	3 cut(s)	48, 189, 211
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	3 cut(s)	46, 187, 209
HinP1I	GCGC	3 cut(s)	46, 187, 209
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	116, 124, 132
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	129, 225
Hpy188III	TCNNGA	2 cut(s)	26, 192
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	246, 292
HpyCH4IV	ACGT	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 184
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	3 cut(s)	46, 187, 209
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	39, 194
LpnPI	CCDG	2 cut(s)	11, 205
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	74, 193
MhlI	GDGCHC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	83, 97, 211
MroXI	GAANNNNTTC	1 cut(s)	81
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	118, 184
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	124, 132
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	233
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	5 cut(s)	36, 57, 100, 203, 264
SfcI	CTRYAG	1 cut(s)	242
SsiI	CCGC	4 cut(s)	112, 149, 204, 207
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	246, 292
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	5 cut(s)	60, 75, 135, 234, 276
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	124, 132
TspGWI	ACGGA	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.