Rh2DG041500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016944
Physical Location & Seq
Forward (+)
2888444 .. 2889090
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG041500.1

Sequence Viewer

Length: 375 bp
ATGAACAGATACGACTGTGACTTGGCAGATCTTCCTGTAATAATCTTGCAGCAGGTAATATATTGTTATATTTCTAAACATGGTTTCAGTGGTATTAATCAAGCCTATCCGATTATGTGCAACATGAATCAGTTGCATTTGGTAACCTGGATTCTAGCTAGTGCAAGTAAAATTGTGGACTTTGGCATCAGTTTGCAAGCCAAGTTATTCGCTGGCTCCACGAAGAAGCTCGAAAGATTGGAAGAAAAGCGAACCGGGACTTCCTATGTTTGTCTTTCGAGCTGGAGCAGGGCGATAACACTGAGCTACATGTGGATCCAAAAGATAGTGAAGGATGCATCTCGTGGTGGTTGGTCATGGAGGATGGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.19

Weight (kDa)

9.3

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016944)

Species Orthologous Gene IDs
malus_domestica MD05G1006700.v1.1
pyrus_communis pycom13g18460 pycom16g15400
rosa_chinensis RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata RLG00000015986
rosa_multiflora Rmu_co8445899.1_g000001
rosa_roxburghii Rroxscaffold_2G00152310
rosa_samantha Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AclWI GGATC 2 cut(s) 310, 323
AflIII ACRYGT 1 cut(s) 309
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 4 cut(s) 158, 229, 282, 306
AluI AGCT 4 cut(s) 158, 229, 282, 306
AlwI GGATC 2 cut(s) 310, 323
ApeKI GCWGC 1 cut(s) 49
AseI ATTAAT 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 256
BaeI ACNNNNGTAYC 1 cut(s) 34
BamHI GGATCC 1 cut(s) 315
BauI CACGAG 1 cut(s) 342
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 148
BcnI CCSGG 1 cut(s) 256
BfaI CTAG 2 cut(s) 155, 159
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 28
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 2 cut(s) 148, 256
BmiI GGNNCC 2 cut(s) 217, 317
BmrFI CCNGG 2 cut(s) 148, 256
BmsI GCATC 3 cut(s) 195, 325, 347
BpmI CTGGAG 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 340, 369
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 28, 315
BspCNI CTCAG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 217, 317
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 310, 323
BssMI GATC 2 cut(s) 28, 315
BssSI CACGAG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 198, 214
BstDEI CTNAG 1 cut(s) 302
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 2 cut(s) 340, 369
BstKTI GATC 2 cut(s) 31, 318
BstMBI GATC 2 cut(s) 28, 315
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 146, 254
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 28, 315
BstYI RGATCY 2 cut(s) 28, 315
BtsCI GGATG 2 cut(s) 340, 369
BtsIMutI CAGTG 2 cut(s) 94, 299
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 198, 214
CviAII CATG 4 cut(s) 80, 124, 310, 357
CviJI RGCY 7 cut(s) 104, 158, 200, 216, 229, 282, 306
CviKI_1 RGCY 7 cut(s) 104, 158, 200, 216, 229, 282, 306
DdeI CTNAG 1 cut(s) 302
DpnI GATC 2 cut(s) 30, 317
DpnII GATC 2 cut(s) 28, 315
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 4 cut(s) 83, 127, 313, 360
FaiI YATR 8 cut(s) 61, 69, 81, 116, 125, 267, 311, 358
FaqI GGGAC 1 cut(s) 271
FatI CATG 4 cut(s) 79, 123, 309, 356
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 155, 159
GluI GCNGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 304
HapII CCGG 1 cut(s) 255
Hin1II CATG 4 cut(s) 83, 127, 313, 360
HinfI GANTC 2 cut(s) 127, 151
HpaII CCGG 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 111
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 6 cut(s) 49, 120, 136, 164, 196, 338
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 4 cut(s) 83, 127, 313, 360
Kzo9I GATC 2 cut(s) 28, 315
LmnI GCTCC 2 cut(s) 221, 285
LpnPI CCDG 8 cut(s) 38, 48, 133, 160, 198, 268, 268, 274
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 3 cut(s) 195, 325, 347
MaeI CTAG 2 cut(s) 155, 159
MaeIII GTNAC 2 cut(s) 17, 142
MalI GATC 2 cut(s) 30, 317
MboI GATC 2 cut(s) 28, 315
MboII GAAGA 3 cut(s) 23, 235, 254
MflI RGATCY 2 cut(s) 28, 315
MluCI AATT 1 cut(s) 171
MnlI CCTC 1 cut(s) 354
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 148, 256
MvaI CCWGG 1 cut(s) 148
NciI CCSGG 1 cut(s) 256
NdeII GATC 2 cut(s) 28, 315
NlaIII CATG 4 cut(s) 83, 127, 313, 360
NlaIV GGNNCC 2 cut(s) 217, 317
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 313
PciI ACATGT 1 cut(s) 309
PfeI GAWTC 2 cut(s) 127, 151
PkrI GCNGC 1 cut(s) 51
PscI ACATGT 1 cut(s) 309
PshBI ATTAAT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 146
PspEI GGTNACC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 217, 317
PsuI RGATCY 2 cut(s) 28, 315
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 28, 315
ScrFI CCNGG 2 cut(s) 148, 256
SetI ASST 6 cut(s) 57, 149, 160, 231, 284, 308
SfaNI GCATC 3 cut(s) 195, 325, 347
Sse9I AATT 1 cut(s) 171
SspMI CTAG 2 cut(s) 155, 159
StyD4I CCNGG 2 cut(s) 146, 254
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 231, 278
TasI AATT 1 cut(s) 171
TfiI GAWTC 2 cut(s) 127, 151
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 94, 306
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 17, 140
TspRI CASTG 2 cut(s) 94, 306
VspI ATTAAT 1 cut(s) 96
XceI RCATGY 1 cut(s) 313
XspI CTAG 2 cut(s) 155, 159
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.