Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016944

Physical Location & Seq

Genomic Coordinates Forward (+)

3313797 .. 3315398

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG042400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACCGGAAAACTGGAAGTCTCTCTGGACAAGCTCCCTATCAAGCGTCCAGACCTCATCGAAGAAAACGGCCTAGAACAATTTCCACCCGATGTAGGTTACGAGGAGAAGTGGGAGTCGCTGATACGGAGAATTGACTTCGCCTGGGAGGTGGAGAAGGACGAGGAGAAGAAGAAGAAGAAGAAGTGGTCCAGAGAGAGCTCGGCGGCGCAATGGGAGTTACAGAGCACGGTGGAGAATCTACACTTGCCTCATCAAGAGAGCTCTCCATCATTATCGATCTCATCTACACTGTGGAAGCTCGAGGCCTTTTCCGATCCTAATGCAAGTAAAATTGTGGACTTTGGCATCAGGTTGCAAGCCAAGTTATTCGCTGGCTCCACGAAGAAGCTCGAAATATTAGAAGAAAAGCGAACCGGGACTTCCTATTTTTGTCTTTCGAGCTCGAGCAGGGCGAGAACACTGAGCTACATGTGGATCCAAAAGATAGTGAAGGATGCATCTCGTGGTGGTTGGTCATGGAGGATGGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

178

Amino Acids

20.6

Weight (kDa)

8.56

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016944)

Species	Orthologous Gene IDs
malus_domestica	MD05G1006700.v1.1
pyrus_communis	pycom13g18460 pycom16g15400
rosa_chinensis	RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata	RLG00000015986
rosa_multiflora	Rmu_co8445899.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152310
rosa_samantha	Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	3 cut(s)	311, 472, 485
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	471
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	7 cut(s)	34, 201, 264, 301, 391, 444, 468
AluI	AGCT	7 cut(s)	34, 201, 264, 301, 391, 444, 468
Alw21I	GWGCWC	4 cut(s)	203, 230, 266, 446
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	311, 472, 485
Ama87I	CYCGRG	2 cut(s)	302, 445
AoxI	GGCC	2 cut(s)	70, 306
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	418
AvaI	CYCGRG	2 cut(s)	302, 445
AvaII	GGWCC	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	477
BanII	GRGCYC	3 cut(s)	203, 266, 446
BauI	CACGAG	1 cut(s)	504
Bbv12I	GWGCWC	4 cut(s)	203, 230, 266, 446
BccI	CCATC	2 cut(s)	277, 520
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	145, 418
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	2 cut(s)	302, 445
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	2 cut(s)	379, 479
BmrFI	CCNGG	2 cut(s)	145, 418
BmsI	GCATC	3 cut(s)	357, 487, 509
BpuMI	CCSGG	1 cut(s)	418
Bsa29I	ATCGAT	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	502, 531
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	119, 179
BshFI	GGCC	2 cut(s)	72, 308
BshVI	ATCGAT	1 cut(s)	278
BsiHKAI	GWGCWC	4 cut(s)	203, 230, 266, 446
BsiHKCI	CYCGRG	2 cut(s)	302, 445
BsiSI	CCGG	2 cut(s)	6, 417
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	72, 308
BsoBI	CYCGRG	2 cut(s)	302, 445
Bsp1286I	GDGCHC	4 cut(s)	203, 230, 266, 446
Bsp143I	GATC	3 cut(s)	279, 316, 477
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	72, 308
BspCNI	CTCAG	1 cut(s)	456
BspDI	ATCGAT	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	379, 479
BspPI	GGATC	3 cut(s)	311, 472, 485
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	279, 316, 477
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	232, 294
BstC8I	GCNNGC	2 cut(s)	360, 376
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	502, 531
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	3 cut(s)	282, 319, 480
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	279, 316, 477
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	2 cut(s)	143, 416
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
Bsu15I	ATCGAT	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	72, 308
BsuTUI	ATCGAT	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	502, 531
BtsIMutI	CAGTG	2 cut(s)	290, 461
Cac8I	GCNNGC	2 cut(s)	360, 376
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	278
CseI	GACGC	1 cut(s)	35
CviAII	CATG	2 cut(s)	472, 519
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	3 cut(s)	281, 318, 479
DpnII	GATC	3 cut(s)	279, 316, 477
Ecl136II	GAGCTC	3 cut(s)	201, 264, 444
Eco147I	AGGCCT	1 cut(s)	308
Eco24I	GRGCYC	3 cut(s)	203, 266, 446
Eco47I	GGWCC	1 cut(s)	189
Eco53kI	GAGCTC	3 cut(s)	201, 264, 444
Eco88I	CYCGRG	2 cut(s)	302, 445
EcoICRI	GAGCTC	3 cut(s)	201, 264, 444
EcoRII	CCWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	3 cut(s)	203, 266, 446
FaeI	CATG	2 cut(s)	475, 522
FaiI	YATR	2 cut(s)	473, 520
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	471, 518
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	3 cut(s)	203, 266, 446
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	72, 308
HapII	CCGG	2 cut(s)	6, 417
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	475, 522
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	2 cut(s)	116, 238
HpaII	CCGG	2 cut(s)	6, 417
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	4 cut(s)	26, 50, 192, 257
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	151, 487
HpyCH4III	ACNGT	2 cut(s)	232, 294
HpyCH4V	TGCA	3 cut(s)	326, 358, 500
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	2 cut(s)	475, 522
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	279, 316, 477
LmnI	GCTCC	2 cut(s)	39, 383
LweI	GCATC	3 cut(s)	357, 487, 509
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	98, 219
MalI	GATC	3 cut(s)	281, 318, 479
MboI	GATC	3 cut(s)	279, 316, 477
MboII	GAAGA	8 cut(s)	74, 181, 184, 187, 190, 193, 397, 416
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	4 cut(s)	203, 230, 266, 446
MluCI	AATT	3 cut(s)	80, 132, 333
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	7 cut(s)	65, 97, 142, 157, 261, 298, 516
Mph1103I	ATGCAT	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	81
MspI	CCGG	2 cut(s)	6, 417
MspR9I	CCNGG	2 cut(s)	145, 418
MvaI	CCWGG	1 cut(s)	145
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	3 cut(s)	279, 316, 477
NlaIII	CATG	2 cut(s)	475, 522
NlaIV	GGNNCC	2 cut(s)	379, 479
NmeAIII	GCCGAG	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	1 cut(s)	475
PaeR7I	CTCGAG	2 cut(s)	302, 445
PceI	AGGCCT	1 cut(s)	308
PciI	ACATGT	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	471
Psp124BI	GAGCTC	3 cut(s)	203, 266, 446
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	379, 479
PspPI	GGNCC	1 cut(s)	189
PspXI	VCTCGAGB	2 cut(s)	302, 445
PsuI	RGATCY	1 cut(s)	477
SacI	GAGCTC	3 cut(s)	203, 266, 446
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	3 cut(s)	279, 316, 477
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	145, 418
SduI	GDGCHC	4 cut(s)	203, 230, 266, 446
SfaNI	GCATC	3 cut(s)	357, 487, 509
Sfr274I	CTCGAG	2 cut(s)	302, 445
SinI	GGWCC	1 cut(s)	189
SlaI	CTCGAG	2 cut(s)	302, 445
SmlI	CTYRAG	2 cut(s)	302, 445
SmoI	CTYRAG	2 cut(s)	302, 445
Sse9I	AATT	3 cut(s)	80, 132, 333
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	1 cut(s)	206
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	3 cut(s)	203, 266, 446
StuI	AGGCCT	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	143, 416
TaaI	ACNGT	2 cut(s)	232, 294
TaqI	TCGA	6 cut(s)	60, 278, 303, 393, 440, 446
TasI	AATT	3 cut(s)	80, 132, 333
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	238
TscAI	CASTG	2 cut(s)	297, 468
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	2 cut(s)	297, 468
VpaK11BI	GGWCC	1 cut(s)	189
XceI	RCATGY	1 cut(s)	475
XhoI	CTCGAG	2 cut(s)	302, 445
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.