Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016944

Physical Location & Seq

Genomic Coordinates Forward (+)

2835186 .. 2838241

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG040900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACCGGAAAACTGGAAGTCTCTCTGGACAAGCTCCCTATCAAGCGCCCAGACCTCATTGAAGAAAACGGCCTCGAACGATTTCCACCCGATGTAGGTTACGAGGAGAAGCGGGAGTCGCTGATACGGAGAATCGACTTCACCTGGGCGGTGGAGAAGGACGAGGAGAAGAAGAAGAAGACCAGAGAGAGCTCGGCGGCGCAATGGGAGTTACAGAGCATGGTGGAGAAGCTACACTTGCCTCATCAAGAGAGCTCTCCGTCATTATCGATCTCATCTACACTGCAAGTCTCTCTTCTCTCAGCTCAGTTATACATCTTTTATTTTTGGGTTCAGTTTAGTAATCATGATCGTGTTATTAATGAATTGATTATGATTGAAAATCAATATACTGCATTTCTGCTTCGGAATGTGAGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

140

Amino Acids

16.43

Weight (kDa)

5.45

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016944)

Species	Orthologous Gene IDs
malus_domestica	MD05G1006700.v1.1
pyrus_communis	pycom13g18460 pycom16g15400
rosa_chinensis	RchiOBHm_Chr1g0378821 RchiOBHm_Chr3g0486301
rosa_laevigata	RLG00000015986
rosa_multiflora	Rmu_co8445899.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152310
rosa_samantha	Rh2AG042400 Rh2BG040900 Rh2DG041400 Rh2DG041500 Rh3AG274500 Rh4DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	112, 149, 197
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	62, 380
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	5 cut(s)	34, 192, 232, 255, 305
AluI	AGCT	5 cut(s)	34, 192, 232, 255, 305
Alw21I	GWGCWC	2 cut(s)	194, 257
Alw26I	GTCTC	2 cut(s)	25, 295
AoxI	GGCC	1 cut(s)	70
AseI	ATTAAT	1 cut(s)	360
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	48, 202
AsuHPI	GGTGA	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	194, 257
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	194, 257
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	25, 295
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	315, 320
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	119, 179
BshFI	GGCC	1 cut(s)	72
BshVI	ATCGAT	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	194, 257
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	25, 295
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	194, 257
Bsp143I	GATC	2 cut(s)	270, 349
BspACI	CCGC	3 cut(s)	112, 149, 197
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	314, 319
BspDI	ATCGAT	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	270, 349
Bst2UI	CCWGG	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	301, 306
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	2 cut(s)	48, 202
BstKTI	GATC	2 cut(s)	273, 352
BstMAI	GTCTC	2 cut(s)	25, 295
BstMBI	GATC	2 cut(s)	270, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 238
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV2I	GAAGAC	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	269
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	2 cut(s)	48, 202
ClaI	ATCGAT	1 cut(s)	269
CviAII	CATG	2 cut(s)	220, 347
CviJI	RGCY	6 cut(s)	34, 72, 192, 232, 255, 305
CviKI_1	RGCY	6 cut(s)	34, 72, 192, 232, 255, 305
DdeI	CTNAG	2 cut(s)	301, 306
DpnI	GATC	2 cut(s)	272, 351
DpnII	GATC	2 cut(s)	270, 349
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	2 cut(s)	192, 255
Eco24I	GRGCYC	2 cut(s)	194, 257
Eco53kI	GAGCTC	2 cut(s)	192, 255
EcoICRI	GAGCTC	2 cut(s)	192, 255
EcoRII	CCWGG	1 cut(s)	143
EcoT38I	GRGCYC	2 cut(s)	194, 257
FaeI	CATG	2 cut(s)	223, 350
FaiI	YATR	5 cut(s)	221, 313, 348, 374, 390
FalI	AAGNNNNNCTT	4 cut(s)	221, 253, 279, 311
FatI	CATG	2 cut(s)	219, 346
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	2 cut(s)	194, 257
Fsp4HI	GCNGC	1 cut(s)	198
GlaI	GCGC	2 cut(s)	47, 201
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	2 cut(s)	48, 202
Hin1II	CATG	2 cut(s)	223, 350
Hin6I	GCGC	2 cut(s)	46, 200
HinP1I	GCGC	2 cut(s)	46, 200
HinfI	GANTC	2 cut(s)	116, 132
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	26, 248, 347
HpyAV	CCTTC	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	286, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 238
HpyF3I	CTNAG	2 cut(s)	301, 306
Hsp92II	CATG	2 cut(s)	223, 350
HspAI	GCGC	2 cut(s)	46, 200
Kzo9I	GATC	2 cut(s)	270, 349
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	6 cut(s)	11, 19, 63, 130, 157, 196
MaeIII	GTNAC	2 cut(s)	98, 210
MalI	GATC	2 cut(s)	272, 351
MboI	GATC	2 cut(s)	270, 349
MboII	GAAGA	6 cut(s)	74, 181, 184, 187, 190, 287
MhlI	GDGCHC	2 cut(s)	194, 257
MluCI	AATT	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	65, 83, 97, 157, 252
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	118, 238
NdeII	GATC	2 cut(s)	270, 349
NlaIII	CATG	2 cut(s)	223, 350
NmeAIII	GCCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	360
Psp124BI	GAGCTC	2 cut(s)	194, 257
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	2 cut(s)	194, 257
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	270, 349
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	194, 257
SetI	ASST	8 cut(s)	36, 57, 100, 146, 194, 234, 257, 307
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	3 cut(s)	112, 149, 197
SstI	GAGCTC	2 cut(s)	194, 257
StyD4I	CCNGG	1 cut(s)	143
TaqI	TCGA	3 cut(s)	75, 135, 269
TasI	AATT	1 cut(s)	365
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	2 cut(s)	142, 249
TspRI	CASTG	1 cut(s)	288
VspI	ATTAAT	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.