pycom13g20010

7-hydroxymethyl chlorophyll a reductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
15988520 .. 15989161
642 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGATACTGCTAAGATGGGTATGTGCAGCAGCTTCTTTGAGATACTTTAGAAAAGGTCCTGAGCCTGCACCAAAGTTTGTCGGCAATGTGATCGCTTTCTTGTTAAACTTGATTGGCCCAAAAGGTTTGGAATTTGCTCGTTATTCGCTCGATTACCATACCATCCGGAACTACCTATATGTAAACCGAACATGGGGAAAACAAAGAGCTGATCAGCATATGCCTTCATATGCAAAGAAGATTGTCGATTCCTACAACAAGAATGGTGAAATCGATCGGATTCTTTCCACCAAGCCCAAGTGA

Protein Analysis

101

Amino Acids

11.6

Weight (kDa)

10.0

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 165
AcsI RAATTY 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 193
AluBI AGCT 2 cut(s) 32, 209
AluI AGCT 2 cut(s) 32, 209
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 26, 29
ApoI RAATTY 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 56, 116
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 38, 41
BccI CCATC 2 cut(s) 9, 170
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BclI TGATCA 1 cut(s) 211
BisI GCNGC 2 cut(s) 27, 30
BlsI GCNGC 2 cut(s) 28, 31
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 56, 116
Bpu10I CCTNAGC 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 91
BseAI TCCGGA 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 273
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 38, 41
BsgI GTGCAG 2 cut(s) 45, 51
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 117
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 193
BsnI GGCC 1 cut(s) 117
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 3 cut(s) 90, 211, 274
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 52
BspDI ATCGAT 1 cut(s) 273
BspEI TCCGGA 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 91
BssMI GATC 3 cut(s) 90, 211, 274
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 11, 60
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 3 cut(s) 93, 214, 277
BstMBI GATC 3 cut(s) 90, 211, 274
BstMCI CGRYCG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 38, 41
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 1 cut(s) 117
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 56, 116
ClaI ATCGAT 1 cut(s) 273
CviAII CATG 1 cut(s) 192
CviJI RGCY 5 cut(s) 32, 64, 117, 209, 295
CviKI_1 RGCY 5 cut(s) 32, 64, 117, 209, 295
DdeI CTNAG 2 cut(s) 11, 60
DpnI GATC 3 cut(s) 92, 213, 276
DpnII GATC 3 cut(s) 90, 211, 274
Eco47I GGWCC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 56
FaeI CATG 1 cut(s) 195
FaiI YATR 9 cut(s) 22, 159, 178, 180, 193, 219, 221, 229, 231
FatI CATG 1 cut(s) 191
FauNDI CATATG 2 cut(s) 219, 229
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 27, 30
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 27, 30
GluI GCNGC 2 cut(s) 27, 30
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 166
Hin1II CATG 1 cut(s) 195
HinfI GANTC 2 cut(s) 248, 280
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 2 cut(s) 59, 166
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 26, 68, 233
HpyF3I CTNAG 2 cut(s) 11, 60
Hsp92II CATG 1 cut(s) 195
Kpn2I TCCGGA 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 90, 211, 274
LpnPI CCDG 3 cut(s) 72, 78, 179
Lsp1109I GCAGC 2 cut(s) 38, 41
MalI GATC 3 cut(s) 92, 213, 276
MboI GATC 3 cut(s) 90, 211, 274
MboII GAAGA 1 cut(s) 250
MluCI AATT 1 cut(s) 131
MroI TCCGGA 1 cut(s) 165
MseI TTAA 1 cut(s) 104
MspI CCGG 1 cut(s) 166
NdeI CATATG 2 cut(s) 219, 229
NdeII GATC 3 cut(s) 90, 211, 274
NlaIII CATG 1 cut(s) 195
PfeI GAWTC 2 cut(s) 248, 280
PkrI GCNGC 2 cut(s) 28, 31
Ple19I CGATCG 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
PspPI GGNCC 2 cut(s) 56, 116
PspPPI RGGWCCY 1 cut(s) 56
PvuI CGATCG 1 cut(s) 277
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 2 cut(s) 27, 30
Sau3AI GATC 3 cut(s) 90, 211, 274
Sau96I GGNCC 2 cut(s) 56, 116
SetI ASST 5 cut(s) 34, 58, 127, 177, 211
SgeI CNNG 9 cut(s) 71, 77, 112, 121, 150, 161, 178, 204, 271
SinI GGWCC 1 cut(s) 56
Sse9I AATT 1 cut(s) 131
TaqI TCGA 3 cut(s) 150, 246, 273
TasI AATT 1 cut(s) 131
TfiI GAWTC 2 cut(s) 248, 280
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 2 cut(s) 26, 29
TspDTI ATGAA 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.