pycom13g28760

Glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
24849644 .. 24850006
363 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGGGTAAGTTCAGTTTTAGTTTCAAGTCTTTTGCCCTAATTGCTTTGCTTGTTTCAAGTGCCTTTGTTATGTCCGAAAGCCGCGTGGCAAGAAAAGACCTGGGGATAGACCTCGGTGGGATTGGACTTGGTGTGGGTGCTGGGGTAGGTGTCGGGCTGGGTGGGAGTGGAGCAGGCTCCGGTGCTGGAGCGGGTTCGGGGTCTGGGGGTGGGTCTAGCTCTAGCTCAAGCTCAAGCTCAAGTTCATCGTCTTCTTCAAGATCCAGCGGGTCGGGCGGAGCAGGGTCTGAAGCAGGTTCATCTGCTGGGTCTTATGCTGGCTCTAGGGCTGGGTCTGGGTCAGGAAACCGAGGACGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

10.77

Weight (kDa)

10.9

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 191
AccII CGCG 1 cut(s) 84
AciI CCGC 4 cut(s) 82, 191, 267, 276
AclWI GGATC 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 309
AgsI TTSAA 3 cut(s) 25, 57, 258
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 4 cut(s) 219, 225, 231, 237
AluI AGCT 4 cut(s) 219, 225, 231, 237
AlwI GGATC 1 cut(s) 255
AlwNI CAGNNNCTG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 101
BfaI CTAG 3 cut(s) 216, 222, 324
BfuAI ACCTGC 1 cut(s) 284
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 3 cut(s) 211, 217, 223
BsaJI CCNNGG 3 cut(s) 100, 112, 349
BsaWI WCCGGW 1 cut(s) 179
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 3 cut(s) 100, 112, 349
BseYI CCCAGC 4 cut(s) 140, 157, 305, 329
Bsh1236I CGCG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 180
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 4 cut(s) 82, 191, 267, 276
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 191
BssECI CCNNGG 3 cut(s) 100, 112, 349
BssMI GATC 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 175, 319
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 41, 273
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstUI CGCG 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 175, 319
CaiI CAGNNNCTG 1 cut(s) 287
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 99
FaiI YATR 2 cut(s) 71, 315
FauI CCCGC 2 cut(s) 184, 260
Fnu4HI GCNGC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 3 cut(s) 216, 222, 324
GluI GCNGC 1 cut(s) 82
GsaI CCCAGC 4 cut(s) 144, 161, 309, 333
GsuI CTGGAG 1 cut(s) 207
HapII CCGG 1 cut(s) 180
HpaII CCGG 1 cut(s) 180
Hpy188I TCNGA 2 cut(s) 76, 289
Hpy188III TCNNGA 2 cut(s) 258, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 273
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 4 cut(s) 170, 182, 188, 278
MaeI CTAG 3 cut(s) 216, 222, 324
MalI GATC 1 cut(s) 262
MbiI CCGCTC 1 cut(s) 191
MboI GATC 1 cut(s) 260
MboII GAAGA 2 cut(s) 243, 246
MflI RGATCY 1 cut(s) 260
MluCI AATT 1 cut(s) 39
MnlI CCTC 3 cut(s) 122, 344, 350
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 41, 273
NdeII GATC 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 99
PspFI CCCAGC 4 cut(s) 140, 157, 305, 329
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 260
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 101
SetI ASST 8 cut(s) 102, 114, 151, 221, 227, 233, 239, 298
SmlI CTYRAG 3 cut(s) 226, 232, 238
SmoI CTYRAG 3 cut(s) 226, 232, 238
Sse9I AATT 1 cut(s) 39
SsiI CCGC 4 cut(s) 82, 191, 267, 276
SspMI CTAG 3 cut(s) 216, 222, 324
StyD4I CCNGG 1 cut(s) 99
TasI AATT 1 cut(s) 39
TauI GCSGC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 234, 288
XspI CTAG 3 cut(s) 216, 222, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.