pycom13g28910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009513
Physical Location & Seq
Reverse (-)
25180074 .. 25180280
207 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGCTGGGATTTCGGGATATAGGAGCCTTGCACCTAAAACAAAGAATGCGATAGTTGCTGGGGGCCTGTCAGCTTTTGTCTTCGGAGTATATTTCTACACCATGAGAGCTGTTGGAGGCACAGATGAACTGCAAGCGGCTATTAACAAGTTTGAGGACGAAAAAGGTCAGAAAGAAGCTGAAGCAAGCATGCCATCGAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.21

Weight (kDa)

8.01

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coa3_cc PF09813 13 - 38 5.2e-08 Cytochrome c oxidase assembly factor 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 201
AluBI AGCT 3 cut(s) 74, 110, 179
AluI AGCT 3 cut(s) 74, 110, 179
AoxI GGCC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 73
BccI CCATC 1 cut(s) 202
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 26, 65
BpiI GAAGAC 1 cut(s) 73
BseYI CCCAGC 2 cut(s) 5, 59
BshFI GGCC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 1 cut(s) 66
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 26, 65
BstC8I GCNNGC 3 cut(s) 135, 187, 191
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 66
Cac8I GCNNGC 3 cut(s) 135, 187, 191
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 2 cut(s) 103, 190
CviJI RGCY 7 cut(s) 5, 27, 66, 74, 110, 140, 179
CviKI_1 RGCY 7 cut(s) 5, 27, 66, 74, 110, 140, 179
Eco57I CTGAAG 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 64
FaeI CATG 2 cut(s) 106, 193
FaiI YATR 4 cut(s) 21, 91, 104, 191
FatI CATG 2 cut(s) 102, 189
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
GsaI CCCAGC 2 cut(s) 9, 63
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 2 cut(s) 106, 193
Hpy188I TCNGA 2 cut(s) 86, 171
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 32, 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
Hsp92II CATG 2 cut(s) 106, 193
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 2 cut(s) 45, 80
MboII GAAGA 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 2 cut(s) 110, 148
MseI TTAA 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 106, 193
NlaIV GGNNCC 2 cut(s) 26, 65
NspI RCATGY 1 cut(s) 193
PaeI GCATGC 1 cut(s) 193
PctI GAATGC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 139
PspFI CCCAGC 2 cut(s) 5, 59
PspN4I GGNNCC 2 cut(s) 26, 65
PspPI GGNCC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 64
SetI ASST 6 cut(s) 37, 76, 112, 169, 181, 204
SphI GCATGC 1 cut(s) 193
SsiI CCGC 1 cut(s) 137
TaqI TCGA 1 cut(s) 197
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 141
XceI RCATGY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.