pycom14g01000

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
709622 .. 713965
4344 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1134 bp
ATGGCTACTTTATCACCTCCTCTGCTTCTTCCTCTTCCTCTTCCTCCTCCCTTCTCATCTCCCGGCCACCGTTTCGCTTCCTTCAAACTCCCCAGAAATTCCACCAATGGAGCTCTTCTCGGAGGACAGCTCGCAAAACGGCACGGTCTCGTGTTTGCCAAAGCTTCCTCCTATCTCTACGCCAACAGAGAAGAGCTTGACACTGTCGATATCGCCGAGGACGTCACGCAGTTGATCGGGAGCACACCCATGGTATACCTCAACAAAGTTTCCGAAGGTTGTGTGGCAAATATTCCAGCAAAGCTTGAATCTATGGAACCCTGCCGAAGTGTCAAGGATAGAATTGGCTGTAGCATGATATTGAATGCTGAAAAAAGTGGGTTAATATCTCCTGGGAAGACTGTATTAGTTGAACCAACTAGTGGAAATACAGGACTTGGTATTGCTTTTGTTGCTGCAACTAAAGGATATAAACTTATAGTCACCATGCCTGCATCCATAAATATTGAAAGGAGGATTCTTTTACGCGCATTTGGGGCAGAGGTTGTTTTGACAGATCCAGAAAAGGGTTTGAAAGGAGCGTTAGATAAAGCTGGGGAAATTGTTCTCAGCACACCAAATTCATATATGCTTCAACAGTTTGATAATGCTGCGAATGCAGAGATCCATTTCGATGCTACTGGGCCAGAAATATGGGAGGATACCATGGGTAATGTTGACATATTTGTTGCTGCTGTTGGAACTGGTGGCACTGTTACAGGCACTGGGCGTTACCTGAAAATGATGAACAAGGAGATAAAGGTAGTAGGTGTGGAACCTGCAGAGAGGAGAGTAATATCTGGAGAAAATCCAGGCTATGTACCAAGCATTTTGGATGTTAATTTGCTCGATGAGGTCATCAAGGTTACCAACGATGAAGCTGTTGAAATGGCGCGAAGGCTAGCATTGGAGGAAGGCTTACTGGTTGGTATTTCATCGGGTGCTGCTGCGGCTGCTGCAATAAGTTTAGCAAGAAGACCTGAGAATACTGGAAAACTTATTGCGGTTATATTTCCAAGTTTTGGTGAGAGGTATATTCCCACTGTACTTTTCCAATCAATTTACGAAGAGGTTCAGAAGATGAAGGGAAAATAA

Protein Analysis

378

Amino Acids

40.29

Weight (kDa)

5.84

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 75 - 352 1.1e-64 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 826
AccB7I CCANNNNNTGG 2 cut(s) 422, 1061
AccI GTMKAC 1 cut(s) 255
AccII CGCG 2 cut(s) 528, 934
AciI CCGC 2 cut(s) 989, 1043
AclWI GGATC 2 cut(s) 551, 658
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 2 cut(s) 97, 619
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 861, 1086
AfiI CCNNNNNNNGG 3 cut(s) 422, 566, 1061
AgsI TTSAA 8 cut(s) 85, 308, 364, 413, 509, 574, 635, 926
AhlI ACTAGT 1 cut(s) 419
AjnI CCWGG 2 cut(s) 391, 850
AluBI AGCT 7 cut(s) 113, 130, 164, 196, 304, 593, 920
AluI AGCT 7 cut(s) 113, 130, 164, 196, 304, 593, 920
Alw21I GWGCWC 2 cut(s) 115, 245
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 551, 658
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 2 cut(s) 64, 683
ApeKI GCWGC 7 cut(s) 455, 650, 731, 983, 986, 992, 995
ApoI RAATTY 2 cut(s) 97, 619
Asp700I GAANNNNTTC 2 cut(s) 603, 1110
AspLEI GCGC 2 cut(s) 530, 934
AspS9I GGNCC 1 cut(s) 683
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 3 cut(s) 6, 475, 1076
AsuNHI GCTAGC 1 cut(s) 940
BanII GRGCYC 1 cut(s) 115
BauI CACGAG 1 cut(s) 149
BbsI GAAGAC 2 cut(s) 404, 1021
Bbv12I GWGCWC 2 cut(s) 115, 245
BbvI GCAGC 7 cut(s) 442, 637, 718, 970, 973, 979, 982
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 2 cut(s) 393, 852
BciVI GTATCC 1 cut(s) 694
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 152
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 2 cut(s) 420, 941
BfmI CTRYAG 2 cut(s) 349, 819
BfuAI ACCTGC 1 cut(s) 826
BfuI GTATCC 1 cut(s) 694
BisI GCNGC 8 cut(s) 456, 651, 732, 984, 987, 990, 993, 996
BlsI GCNGC 8 cut(s) 457, 652, 733, 985, 988, 991, 994, 997
Bme1390I CCNGG 3 cut(s) 63, 393, 852
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 2 cut(s) 318, 816
BmrFI CCNGG 3 cut(s) 63, 393, 852
BmrI ACTGGG 2 cut(s) 690, 774
BmsI GCATC 2 cut(s) 503, 664
BmtI GCTAGC 1 cut(s) 944
BmuI ACTGGG 2 cut(s) 690, 774
BpiI GAAGAC 2 cut(s) 404, 1021
BplI GAGNNNNNCTC 4 cut(s) 102, 134, 114, 146
BpmI CTGGAG 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 216, 249, 392, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 566, 1061
Bse1I ACTGG 5 cut(s) 685, 748, 769, 966, 1033
BseBI CCWGG 2 cut(s) 393, 852
BseDI CCNNGG 4 cut(s) 216, 249, 392, 705
BseGI GGATG 2 cut(s) 494, 880
BseLI CCNNNNNNNGG 3 cut(s) 422, 566, 1061
BseMII CTCAG 2 cut(s) 622, 1011
BseNI ACTGG 5 cut(s) 685, 748, 769, 966, 1033
BseRI GAGGAG 3 cut(s) 9, 36, 841
BseXI GCAGC 7 cut(s) 442, 637, 718, 970, 973, 979, 982
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 2 cut(s) 528, 934
BshFI GGCC 2 cut(s) 66, 685
BsiHKAI GWGCWC 2 cut(s) 115, 245
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 422, 566, 1061
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 2 cut(s) 370, 661
BsnI GGCC 2 cut(s) 66, 685
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 115, 245
Bsp143I GATC 3 cut(s) 234, 556, 663
Bsp19I CCATGG 2 cut(s) 249, 705
BspACI CCGC 2 cut(s) 989, 1043
BspANI GGCC 2 cut(s) 66, 685
BspCNI CTCAG 2 cut(s) 621, 1012
BspFNI CGCG 2 cut(s) 528, 934
BspLI GGNNCC 2 cut(s) 318, 816
BspMAI CTGCAG 1 cut(s) 823
BspMI ACCTGC 1 cut(s) 826
BspOI GCTAGC 1 cut(s) 944
BspPI GGATC 2 cut(s) 551, 658
BspQI GCTCTTC 2 cut(s) 120, 186
BspTNI GGTCTC 1 cut(s) 152
BsrI ACTGG 5 cut(s) 685, 748, 769, 966, 1033
BssECI CCNNGG 4 cut(s) 216, 249, 392, 705
BssMI GATC 3 cut(s) 234, 556, 663
BssNAI GTATAC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 222
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 249, 705
Bst1107I GTATAC 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 393, 852
Bst4CI ACNGT 7 cut(s) 71, 146, 205, 403, 639, 754, 1084
Bst6I CTCTTC 5 cut(s) 39, 45, 120, 186, 1101
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 132, 492, 942
BstDEI CTNAG 2 cut(s) 608, 1020
BstDSI CCRYGG 2 cut(s) 249, 705
BstEII GGTNACC 1 cut(s) 904
BstF5I GGATG 2 cut(s) 494, 880
BstFNI CGCG 2 cut(s) 528, 934
BstHHI GCGC 2 cut(s) 530, 934
BstKTI GATC 3 cut(s) 237, 559, 666
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 234, 556, 663
BstMWI GCNNNNNNNGC 6 cut(s) 452, 536, 656, 989, 992, 995
BstNI CCWGG 2 cut(s) 393, 852
BstPI GGTNACC 1 cut(s) 904
BstSCI CCNGG 3 cut(s) 61, 391, 850
BstSFI CTRYAG 2 cut(s) 349, 819
BstUI CGCG 2 cut(s) 528, 934
BstV1I GCAGC 7 cut(s) 442, 637, 718, 970, 973, 979, 982
BstV2I GAAGAC 2 cut(s) 404, 1021
BstX2I RGATCY 2 cut(s) 556, 663
BstXI CCANNNNNNTGG 1 cut(s) 693
BstYI RGATCY 2 cut(s) 556, 663
BstZ17I GTATAC 1 cut(s) 256
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 2 cut(s) 66, 685
BtgI CCRYGG 2 cut(s) 249, 705
BtsCI GGATG 2 cut(s) 494, 880
BtsIMutI CAGTG 4 cut(s) 201, 750, 762, 1080
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 3 cut(s) 132, 492, 942
CaiI CAGNNNCTG 1 cut(s) 764
CfoI GCGC 2 cut(s) 530, 934
Cfr13I GGNCC 1 cut(s) 683
Csp6I GTAC 2 cut(s) 860, 1085
CviAII CATG 4 cut(s) 250, 355, 487, 706
CviQI GTAC 2 cut(s) 860, 1085
DdeI CTNAG 2 cut(s) 608, 1020
DpnI GATC 3 cut(s) 236, 558, 665
DpnII GATC 3 cut(s) 234, 556, 663
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 5 cut(s) 39, 45, 120, 186, 1101
EarI CTCTTC 5 cut(s) 39, 45, 120, 186, 1101
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 249, 705
Eco24I GRGCYC 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 904
EcoICRI GAGCTC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 904
EcoRII CCWGG 2 cut(s) 391, 850
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 249, 705
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 249, 705
FaeI CATG 4 cut(s) 253, 358, 490, 709
FatI CATG 4 cut(s) 249, 354, 486, 705
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 8 cut(s) 456, 651, 732, 984, 987, 990, 993, 996
FokI GGATG 2 cut(s) 481, 887
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 8 cut(s) 456, 651, 732, 984, 987, 990, 993, 996
FspBI CTAG 2 cut(s) 420, 941
GlaI GCGC 2 cut(s) 529, 933
GluI GCNGC 8 cut(s) 456, 651, 732, 984, 987, 990, 993, 996
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 861
HaeIII GGCC 2 cut(s) 66, 685
HapII CCGG 1 cut(s) 63
HhaI GCGC 2 cut(s) 530, 934
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 253, 358, 490, 709
Hin6I GCGC 2 cut(s) 528, 932
HinP1I GCGC 2 cut(s) 528, 932
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 2 cut(s) 162, 302
HinfI GANTC 2 cut(s) 308, 517
HpaII CCGG 1 cut(s) 63
HphI GGTGA 3 cut(s) 6, 475, 1076
Hpy166II GTNNAC 2 cut(s) 256, 718
Hpy188I TCNGA 3 cut(s) 122, 274, 1116
Hpy188III TCNNGA 3 cut(s) 238, 560, 840
Hpy8I GTNNAC 2 cut(s) 256, 718
HpyAV CCTTC 6 cut(s) 61, 91, 269, 930, 947, 1117
HpyCH4III ACNGT 7 cut(s) 71, 146, 205, 403, 639, 754, 1084
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 458, 494, 659, 821, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 452, 536, 656, 989, 992, 995
HpyF3I CTNAG 2 cut(s) 608, 1020
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 253, 358, 490, 709
HspAI GCGC 2 cut(s) 528, 932
Kzo9I GATC 3 cut(s) 234, 556, 663
LguI GCTCTTC 2 cut(s) 120, 186
LmnI GCTCC 3 cut(s) 110, 240, 578
Lsp1109I GCAGC 7 cut(s) 442, 637, 718, 970, 973, 979, 982
LweI GCATC 2 cut(s) 503, 664
MaeI CTAG 2 cut(s) 420, 941
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 5 cut(s) 223, 481, 754, 770, 904
MalI GATC 3 cut(s) 236, 558, 665
MboI GATC 3 cut(s) 234, 556, 663
MboII GAAGA 9 cut(s) 20, 26, 32, 107, 203, 409, 1026, 1118, 1129
MflI RGATCY 2 cut(s) 556, 663
MhlI GDGCHC 2 cut(s) 115, 245
MluCI AATT 6 cut(s) 97, 342, 600, 619, 880, 1098
MmeI TCCRAC 1 cut(s) 718
MroXI GAANNNNTTC 2 cut(s) 603, 1110
MseI TTAA 2 cut(s) 383, 879
MslI CAYNNNNRTG 2 cut(s) 248, 672
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 63, 393, 852
Mva1269I GAATGC 2 cut(s) 370, 661
MvaI CCWGG 2 cut(s) 393, 852
MvnI CGCG 2 cut(s) 528, 934
MwoI GCNNNNNNNGC 6 cut(s) 452, 536, 656, 989, 992, 995
NciI CCSGG 1 cut(s) 63
NcoI CCATGG 2 cut(s) 249, 705
NdeII GATC 3 cut(s) 234, 556, 663
NheI GCTAGC 1 cut(s) 940
NlaIII CATG 4 cut(s) 253, 358, 490, 709
NlaIV GGNNCC 2 cut(s) 318, 816
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 223, 481
PciSI GCTCTTC 2 cut(s) 120, 186
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 219
PctI GAATGC 2 cut(s) 370, 661
PdmI GAANNNNTTC 2 cut(s) 603, 1110
PfeI GAWTC 2 cut(s) 308, 517
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 2 cut(s) 422, 1061
PkrI GCNGC 8 cut(s) 457, 652, 733, 985, 988, 991, 994, 997
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 2 cut(s) 391, 850
PspEI GGTNACC 1 cut(s) 904
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 2 cut(s) 391, 850
PspN4I GGNNCC 2 cut(s) 318, 816
PspPI GGNCC 1 cut(s) 683
PstI CTGCAG 1 cut(s) 823
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 556, 663
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 2 cut(s) 861, 1086
RsaNI GTAC 2 cut(s) 860, 1085
RseI CAYNNNNRTG 2 cut(s) 248, 672
SacI GAGCTC 1 cut(s) 115
SapI GCTCTTC 2 cut(s) 120, 186
SaqAI TTAA 2 cut(s) 383, 879
SatI GCNGC 8 cut(s) 456, 651, 732, 984, 987, 990, 993, 996
Sau3AI GATC 3 cut(s) 234, 556, 663
Sau96I GGNCC 1 cut(s) 683
ScrFI CCNGG 3 cut(s) 63, 393, 852
SduI GDGCHC 2 cut(s) 115, 245
SfaNI GCATC 2 cut(s) 503, 664
SfcI CTRYAG 2 cut(s) 349, 819
SmiMI CAYNNNNRTG 2 cut(s) 248, 672
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 6 cut(s) 97, 342, 600, 619, 880, 1098
SsiI CCGC 2 cut(s) 989, 1043
SspI AATATT 2 cut(s) 292, 505
SspMI CTAG 2 cut(s) 420, 941
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 61, 391, 850
StyI CCWWGG 2 cut(s) 249, 705
TaaI ACNGT 7 cut(s) 71, 146, 205, 403, 639, 754, 1084
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 207, 672, 888
TasI AATT 6 cut(s) 97, 342, 600, 619, 880, 1098
TatI WGTACW 1 cut(s) 1084
TauI GCSGC 1 cut(s) 992
TfiI GAWTC 2 cut(s) 308, 517
Tru1I TTAA 2 cut(s) 383, 879
Tru9I TTAA 2 cut(s) 383, 879
TscAI CASTG 4 cut(s) 208, 757, 769, 1087
TseFI GTSAC 2 cut(s) 223, 481
TseI GCWGC 7 cut(s) 455, 650, 731, 983, 986, 992, 995
Tsp45I GTSAC 2 cut(s) 223, 481
TspDTI ATGAA 4 cut(s) 612, 800, 930, 963
TspRI CASTG 4 cut(s) 208, 757, 769, 1087
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 2 cut(s) 422, 1061
XapI RAATTY 2 cut(s) 97, 619
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 2 cut(s) 603, 1110
XspI CTAG 2 cut(s) 420, 941
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.