Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008113

Physical Location & Seq

Genomic Coordinates Reverse (-)

763955 .. 772198

Gene Structure 8244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGATGGGAAACAATCATCCCGCTCCACCTGTAAGCAATGGAAAGGGTTCAAATCCTATCAAGATAGTGAAGAGGGATGCACACTCAGTTAGACTTAAATTGGCTGTTGGAGGTCTGCCAGAAAAAATACTTACCGCATTTCAACCTGTTCTTGATGAACATCTTACCGAAGAAGCTGCTTTAAACAAGTGTAGTGCTGCTGTACTTTATGTGGGTAAAATTGATGAAGATGTTGAAAACACCTTGATTCATGGAACTCAGCCGGTATCCACATTGTTGGATGATTTGAAAGAGCAGGAAGATGTACTTAATCAATCTGTTGGGCAGCTTGAAAGTTCGGAGGCAACAAGATCTACCTTGGTTTTGCAGCTTAAAGAAGCACTCCAGGATCAAGAATCAAAGCTGGAAGTTGTTCGCACTCAATTGCAGGTTGCTCGACATCAGATTGAGAGGGTAGGTAATATTAAAAAGAGACTGAACCCCGAAAGCAATATCGTTAACATGACACCTGAATCTACCAGGGATTTAGAACCAAATATACCATTACGTCAACAAACTGGCATCCCACCTCATCCTCCAACGCAGGCCGTGGTTTCTTTTGCCCCTGTCAAAATTACTGATGAAGAGAACAAGAAAGCAGCTGCAGCTGCTGTTGCTGCTAAGCTTGCTGCGTCTACATCTTCTGCACAGATGTTAACGTCTGTTCTTTCATCTCTTGTTGCTGAAGAAGCTGCCTCGATGACCAGTAGCCTAACTTCAGCTGTATTTACATCAGGATTATCCATGTTTCCTCCAGAAAAACGGCCCAAGCTTGAGAAACAAATGTCTGATGTTAACAATCCTGATGGCGGCAATGCAGCCTATTTTACGTCTCTCCAGCAGGCAATGACCAGTGTTCCAATTGCGTCCCCAGCAACGATGCAGCCCATGTCCCAAAGTAACCAGATGCAAAATCCTTTTGGTCCACCACCACCACCTCCAGCGCCATCACCATCTACTGCAACTCCACCACCGAATCAATACGTCCAATCCACTGGTCTTATGGTGGGTGGAGTTCCTTACGGATATGGATCAAATACTTTACCGCCTCCACCCCCCATACCTCCACATATTTCAATGAGCATGTCGAGGCCCAGTCAACAGCAACAGCAATCGCAGCCTCAGCAGCAGCAACAACAGCAGCAGTTGCAGCCGGCCACTGGGGGTTATTATCGGCCACTGGGTATGGGGTTCTACGGGCAAAGTAATCAGTCAAATACACAGCCAGTACCTCGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

427

Amino Acids

45.74

Weight (kDa)

6.2

Isoelectric Point (pI)

69.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008113)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29400 FvH4_1g29400 FvH4_1g29400
malus_domestica	MD12G1014900.v1.1 MD14G1012500.v1.1
prunus_persica	Prupe.7G025900_v2.0.a1 Prupe.7G025900_v2.0.a1
pyrus_communis	pycom12g01210 pycom14g01070
rosa_chinensis	RchiOBHm_Chr3g0495551
rosa_laevigata	RLG00000022610 RLG00000022611 RLG00000022612
rosa_multiflora	Rmu_sc0004755.1_g000001 Rmu_sc0006163.1_g000001 Rmu_sc0014579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390310
rosa_rugosa	Rorug03G0274000 Rorug03G0274100
rosa_samantha	Rh3AG321900 Rh3BG357000 Rh3CG353800 Rh3DG356600
rosa_wichuraiana	Rw3G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
AccBSI	CCGCTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	674
AciI	CCGC	4 cut(s)	21, 135, 849, 1085
AclWI	GGATC	2 cut(s)	396, 1078
AcoI	YGGCCR	2 cut(s)	1194, 1214
AcuI	CTGAAG	2 cut(s)	741, 744
AfaI	GTAC	3 cut(s)	204, 306, 1269
AfiI	CCNNNNNNNGG	2 cut(s)	848, 1199
AgsI	TTSAA	6 cut(s)	51, 143, 236, 289, 332, 1116
AjnI	CCWGG	2 cut(s)	384, 518
Alw26I	GTCTC	2 cut(s)	466, 876
AlwI	GGATC	2 cut(s)	396, 1078
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	5 cut(s)	585, 803, 1130, 1194, 1214
Asp700I	GAANNNNTTC	2 cut(s)	46, 411
AspLEI	GCGC	1 cut(s)	985
AspS9I	GGNCC	3 cut(s)	804, 962, 1131
AsuHPI	GGTGA	1 cut(s)	981
AvaII	GGWCC	1 cut(s)	962
BarI	GAAGNNNNNNTAC	2 cut(s)	739, 771
BbvCI	CCTCAGC	1 cut(s)	1161
BccI	CCATC	3 cut(s)	839, 994, 1000
BceAI	ACGGC	2 cut(s)	572, 818
BcgI	CGANNNNNNTGC	4 cut(s)	158, 192, 416, 450
BciT130I	CCWGG	2 cut(s)	386, 520
BciVI	GTATCC	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	466, 876
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	986
BfuAI	ACCTGC	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	660
Bme1390I	CCNGG	2 cut(s)	386, 520
Bme18I	GGWCC	1 cut(s)	962
BmgT120I	GGNCC	3 cut(s)	804, 962, 1131
BmrFI	CCNGG	2 cut(s)	386, 520
BmrI	ACTGGG	3 cut(s)	1128, 1209, 1229
BmsI	GCATC	4 cut(s)	67, 570, 909, 936
BmuI	ACTGGG	3 cut(s)	1128, 1209, 1229
BpmI	CTGGAG	4 cut(s)	368, 777, 860, 963
Bpu10I	CCTNAGC	1 cut(s)	1161
Bpu1102I	GCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	833
BsaBI	GATNNNNATC	2 cut(s)	159, 1069
BsaJI	CCNNGG	3 cut(s)	357, 519, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	2 cut(s)	848, 1199
Bse118I	RCCGGY	2 cut(s)	262, 1192
Bse1I	ACTGG	8 cut(s)	562, 744, 891, 1039, 1134, 1204, 1224, 1265
Bse3DI	GCAATG	3 cut(s)	43, 859, 891
Bse8I	GATNNNNATC	2 cut(s)	159, 1069
BseBI	CCWGG	2 cut(s)	386, 520
BseDI	CCNNGG	3 cut(s)	357, 519, 588
BseGI	GGATG	5 cut(s)	16, 82, 286, 561, 571
BseJI	GATNNNNATC	2 cut(s)	159, 1069
BseLI	CCNNNNNNNGG	2 cut(s)	848, 1199
BseMI	GCAATG	3 cut(s)	43, 859, 891
BseMII	CTCAG	3 cut(s)	99, 272, 1175
BseNI	ACTGG	8 cut(s)	562, 744, 891, 1039, 1134, 1204, 1224, 1265
BseYI	CCCAGC	1 cut(s)	910
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	5 cut(s)	587, 805, 1132, 1196, 1216
BsiSI	CCGG	2 cut(s)	263, 1193
BslFI	GGGAC	2 cut(s)	892, 916
BslI	CCNNNNNNNGG	2 cut(s)	848, 1199
BsmAI	GTCTC	2 cut(s)	466, 876
BsmBI	CGTCTC	1 cut(s)	876
BsmFI	GGGAC	2 cut(s)	892, 916
BsnI	GGCC	5 cut(s)	587, 805, 1132, 1196, 1216
Bsp143I	GATC	3 cut(s)	350, 388, 1070
Bsp1720I	GCTNAGC	1 cut(s)	660
BspACI	CCGC	4 cut(s)	21, 135, 849, 1085
BspANI	GGCC	5 cut(s)	587, 805, 1132, 1196, 1216
BspCNI	CTCAG	3 cut(s)	98, 271, 1174
BspMAI	CTGCAG	1 cut(s)	646
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	2 cut(s)	396, 1078
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	3 cut(s)	43, 859, 891
BsrFI	RCCGGY	2 cut(s)	262, 1192
BsrI	ACTGG	8 cut(s)	562, 744, 891, 1039, 1134, 1204, 1224, 1265
BssAI	RCCGGY	2 cut(s)	262, 1192
BssECI	CCNNGG	3 cut(s)	357, 519, 588
BssMI	GATC	3 cut(s)	350, 388, 1070
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	386, 520
Bst4CI	ACNGT	1 cut(s)	1278
Bst6I	CTCTTC	2 cut(s)	65, 618
BstAPI	GCANNNNNTGC	1 cut(s)	1186
BstC8I	GCNNGC	4 cut(s)	585, 666, 882, 1194
BstDEI	CTNAG	4 cut(s)	85, 258, 660, 1161
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	5 cut(s)	16, 82, 286, 561, 571
BstH2I	RGCGCY	1 cut(s)	986
BstHHI	GCGC	1 cut(s)	985
BstKTI	GATC	3 cut(s)	353, 391, 1073
BstMAI	GTCTC	2 cut(s)	466, 876
BstMBI	GATC	3 cut(s)	350, 388, 1070
BstNI	CCWGG	2 cut(s)	386, 520
BstNSI	RCATGY	1 cut(s)	1126
BstSCI	CCNGG	2 cut(s)	384, 518
BstSFI	CTRYAG	1 cut(s)	642
BstX2I	RGATCY	1 cut(s)	350
BstXI	CCANNNNNNTGG	2 cut(s)	277, 1034
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	5 cut(s)	587, 805, 1132, 1196, 1216
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	5 cut(s)	16, 82, 286, 561, 571
BtsIMutI	CAGTG	4 cut(s)	898, 1032, 1197, 1217
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	4 cut(s)	585, 666, 882, 1194
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	985
Cfr10I	RCCGGY	2 cut(s)	262, 1192
Cfr13I	GGNCC	3 cut(s)	804, 962, 1131
CseI	GACGC	2 cut(s)	660, 894
Csp6I	GTAC	3 cut(s)	203, 305, 1268
CviAII	CATG	5 cut(s)	251, 502, 784, 928, 1123
CviQI	GTAC	3 cut(s)	203, 305, 1268
DdeI	CTNAG	4 cut(s)	85, 258, 660, 1161
DpnI	GATC	3 cut(s)	352, 390, 1072
DpnII	GATC	3 cut(s)	350, 388, 1070
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	2 cut(s)	1194, 1214
Eam1104I	CTCTTC	2 cut(s)	65, 618
EarI	CTCTTC	2 cut(s)	65, 618
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	2 cut(s)	741, 744
EcoRII	CCWGG	2 cut(s)	384, 518
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	876
FaeI	CATG	5 cut(s)	254, 505, 787, 931, 1126
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	2 cut(s)	892, 916
FatI	CATG	5 cut(s)	250, 501, 783, 927, 1122
FauI	CCCGC	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	674
FokI	GGATG	5 cut(s)	3, 89, 293, 548, 558
GlaI	GCGC	1 cut(s)	984
GsaI	CCCAGC	1 cut(s)	914
GsuI	CTGGAG	4 cut(s)	368, 777, 860, 963
HaeII	RGCGCY	1 cut(s)	986
HaeIII	GGCC	5 cut(s)	587, 805, 1132, 1196, 1216
HapII	CCGG	2 cut(s)	263, 1193
HgaI	GACGC	2 cut(s)	660, 894
HhaI	GCGC	1 cut(s)	985
Hin1II	CATG	5 cut(s)	254, 505, 787, 931, 1126
Hin6I	GCGC	1 cut(s)	983
HinP1I	GCGC	1 cut(s)	983
HincII	GTYRAC	5 cut(s)	499, 551, 696, 835, 1139
HindII	GTYRAC	5 cut(s)	499, 551, 696, 835, 1139
HindIII	AAGCTT	2 cut(s)	662, 809
HinfI	GANTC	4 cut(s)	247, 395, 512, 1015
HpaI	GTTAAC	3 cut(s)	499, 696, 835
HpaII	CCGG	2 cut(s)	263, 1193
HphI	GGTGA	1 cut(s)	981
Hpy166II	GTNNAC	7 cut(s)	499, 551, 675, 696, 835, 965, 1139
Hpy188I	TCNGA	3 cut(s)	340, 444, 829
Hpy188III	TCNNGA	6 cut(s)	61, 152, 392, 774, 794, 842
Hpy8I	GTNNAC	7 cut(s)	499, 551, 675, 696, 835, 965, 1139
HpyCH4III	ACNGT	1 cut(s)	1278
HpyCH4IV	ACGT	4 cut(s)	547, 698, 869, 1023
HpyF3I	CTNAG	4 cut(s)	85, 258, 660, 1161
HpySE526I	ACGT	4 cut(s)	547, 698, 869, 1023
Hsp92II	CATG	5 cut(s)	254, 505, 787, 931, 1126
HspAI	GCGC	1 cut(s)	983
KroI	GCCGGC	1 cut(s)	1192
KroNI	GCCGGC	1 cut(s)	1194
KspAI	GTTAAC	3 cut(s)	499, 696, 835
Kzo9I	GATC	3 cut(s)	350, 388, 1070
LmnI	GCTCC	1 cut(s)	28
LweI	GCATC	4 cut(s)	67, 570, 909, 936
MaeII	ACGT	4 cut(s)	547, 698, 869, 1023
MaeIII	GTNAC	1 cut(s)	938
MalI	GATC	3 cut(s)	352, 390, 1072
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	3 cut(s)	350, 388, 1070
MboII	GAAGA	7 cut(s)	82, 182, 239, 311, 635, 672, 737
MfeI	CAATTG	2 cut(s)	422, 900
MflI	RGATCY	1 cut(s)	350
MluCI	AATT	5 cut(s)	98, 219, 422, 612, 900
MmeI	TCCRAC	3 cut(s)	88, 258, 602
MroNI	GCCGGC	1 cut(s)	1192
MroXI	GAANNNNTTC	2 cut(s)	46, 411
MseI	TTAA	8 cut(s)	96, 182, 309, 372, 465, 498, 695, 834
MspA1I	CMGCKG	3 cut(s)	641, 647, 761
MspI	CCGG	2 cut(s)	263, 1193
MspR9I	CCNGG	2 cut(s)	386, 520
MunI	CAATTG	2 cut(s)	422, 900
MvaI	CCWGG	2 cut(s)	386, 520
NaeI	GCCGGC	1 cut(s)	1194
NdeII	GATC	3 cut(s)	350, 388, 1070
NgoMIV	GCCGGC	1 cut(s)	1192
NlaIII	CATG	5 cut(s)	254, 505, 787, 931, 1126
NspI	RCATGY	1 cut(s)	1126
PdiI	GCCGGC	1 cut(s)	1194
PdmI	GAANNNNTTC	2 cut(s)	46, 411
PfeI	GAWTC	4 cut(s)	247, 395, 512, 1015
PfoI	TCCNGGA	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	384, 518
PspFI	CCCAGC	1 cut(s)	910
PspGI	CCWGG	2 cut(s)	384, 518
PspPI	GGNCC	3 cut(s)	804, 962, 1131
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PstI	CTGCAG	1 cut(s)	646
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	350
PvuII	CAGCTG	3 cut(s)	641, 647, 761
RsaI	GTAC	3 cut(s)	204, 306, 1269
RsaNI	GTAC	3 cut(s)	203, 305, 1268
SaqAI	TTAA	8 cut(s)	96, 182, 309, 372, 465, 498, 695, 834
Sau3AI	GATC	3 cut(s)	350, 388, 1070
Sau96I	GGNCC	3 cut(s)	804, 962, 1131
ScrFI	CCNGG	2 cut(s)	386, 520
SfaNI	GCATC	4 cut(s)	67, 570, 909, 936
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	962
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	5 cut(s)	98, 219, 422, 612, 900
SsiI	CCGC	4 cut(s)	21, 135, 849, 1085
SspI	AATATT	1 cut(s)	463
StyD4I	CCNGG	2 cut(s)	384, 518
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	1278
TaiI	ACGT	4 cut(s)	550, 701, 872, 1026
TaqI	TCGA	4 cut(s)	436, 737, 1127, 1273
TasI	AATT	5 cut(s)	98, 219, 422, 612, 900
TatI	WGTACW	2 cut(s)	202, 304
TauI	GCSGC	1 cut(s)	852
TfiI	GAWTC	4 cut(s)	247, 395, 512, 1015
Tru1I	TTAA	8 cut(s)	96, 182, 309, 372, 465, 498, 695, 834
Tru9I	TTAA	8 cut(s)	96, 182, 309, 372, 465, 498, 695, 834
TscAI	CASTG	4 cut(s)	898, 1039, 1204, 1224
TspDTI	ATGAA	5 cut(s)	171, 239, 240, 636, 699
TspGWI	ACGGA	1 cut(s)	1077
TspRI	CASTG	4 cut(s)	898, 1039, 1204, 1224
VpaK11BI	GGWCC	1 cut(s)	962
XceI	RCATGY	1 cut(s)	1126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	674
XmnI	GAANNNNTTC	2 cut(s)	46, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.