Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013696

Physical Location & Seq

Genomic Coordinates Forward (+)

1642811 .. 1643383

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTAAAAAAATGTTGCTGCTGTTTCTGCATCATTGTTGTAGCACTCGGTGCTCTCAGCTTAACGGCTTGTTTCGCGGTTCGTCAATTCAGCCCTTCTAAATCGATAATTTACCAGGTCACTGATGCTTTGCTGACGCAATTCAACCTGACGGCAACCAACAACACCATCCTATACAATCTGTCCCTCAACATGACTGTTCAAAACCGTAACAAATGGAATGACTTCCACTATGAACATTTTGAAGCCGTTCCTAGTTATAAGAACCAGGGTTTGAGTAAAAGTATTTTGGAACCATTCGGGGTAGCGCACAGGGATACGTACGATTTGAATCCATTGTTCAAGGGACTACGACCGGTGACGGCTCTTACGAAAGAGGAGGCTTCAAATTTTAGGAATAGTACAGTTTTTGATATCACGTTGAAGATCTATTTTAAGTATTGGACCAAAATTGCTGTGTACAAGGATGAGAAGGAGCTCCAGATGGCTTGCTATTTGAAGGTTCCATTGAGTTCTAGCGGAAAACCAGCTGAAAATTTTCAGAGCACCAAATGTGATAAGGCCGACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

191

Amino Acids

21.65

Weight (kDa)

8.85

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10090
malus_domestica	MD12G1035100.v1.1 MD14G1021800.v1.1 MD14G1021900.v1.1
prunus_persica	Prupe.6G291900_v2.0.a1 Prupe.7G111700_v2.0.a1 Prupe.7G111800_v2.0.a1
pyrus_communis	pycom14g02100
rosa_chinensis	RchiOBHm_Chr3g0460791
rosa_laevigata	RLG00000024981
rosa_multiflora	Rmu_sc0007678.1_g000020
rosa_roxburghii	Rroxscaffold_6G00419220
rosa_rugosa	Rorug03G0046500
rosa_samantha	Rh3AG103400 Rh3BG107100 Rh3CG109000 Rh3DG108900
rosa_wichuraiana	Rw3G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AccII	CGCG	1 cut(s)	77
AciI	CCGC	2 cut(s)	77, 519
AcsI	RAATTY	2 cut(s)	388, 535
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	323, 403, 461
AgeI	ACCGGT	1 cut(s)	355
AgsI	TTSAA	8 cut(s)	145, 203, 245, 331, 343, 387, 424, 499
AjnI	CCWGG	2 cut(s)	114, 267
AluBI	AGCT	3 cut(s)	60, 478, 530
AluI	AGCT	3 cut(s)	60, 478, 530
Alw21I	GWGCWC	3 cut(s)	55, 480, 548
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	2 cut(s)	388, 535
AsiGI	ACCGGT	1 cut(s)	355
Asp700I	GAANNNNTTC	3 cut(s)	224, 249, 537
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	3 cut(s)	55, 480, 548
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	2 cut(s)	176, 478
BceAI	ACGGC	4 cut(s)	81, 168, 233, 378
BciT130I	CCWGG	2 cut(s)	116, 269
BciVI	GTATCC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	255, 516
BfuI	GTATCC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	116, 269
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	2 cut(s)	294, 504
BmrFI	CCNGG	2 cut(s)	116, 269
BmsI	GCATC	2 cut(s)	39, 115
BpmI	CTGGAG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	116, 269
BseCI	ATCGAT	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	168, 472
BseJI	GATNNNNATC	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	563
BshTI	ACCGGT	1 cut(s)	355
BshVI	ATCGAT	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	356
BsiHKAI	GWGCWC	3 cut(s)	55, 480, 548
BsiSI	CCGG	1 cut(s)	356
BsiWI	CGTACG	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	169, 360
BsmFI	GGGAC	2 cut(s)	169, 360
BsnI	GGCC	1 cut(s)	563
Bsp1286I	GDGCHC	3 cut(s)	55, 480, 548
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	426
BspACI	CCGC	2 cut(s)	77, 519
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	1 cut(s)	69
BspDI	ATCGAT	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	294, 504
BsrFI	RCCGGY	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	116, 269
Bst4CI	ACNGT	3 cut(s)	199, 209, 406
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	459
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	168, 472
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	426
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 50, 74
BstNI	CCWGG	2 cut(s)	116, 269
BstSCI	CCNGG	2 cut(s)	114, 267
BstSNI	TACGTA	1 cut(s)	321
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	563
BsuTUI	ATCGAT	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	168, 472
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	444
ClaI	ATCGAT	1 cut(s)	104
CseI	GACGC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	322, 402, 460
CspAI	ACCGGT	1 cut(s)	355
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	3 cut(s)	322, 402, 460
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
DraIII	CACNNNGTG	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	478
Eco105I	TACGTA	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	478
EcoRII	CCWGG	2 cut(s)	114, 267
EcoRV	GATATC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	1 cut(s)	196
FaiI	YATR	4 cut(s)	175, 194, 234, 261
FaqI	GGGAC	2 cut(s)	169, 360
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	155, 479
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	255, 516
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	1 cut(s)	356
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	105, 466, 493
HpyCH4III	ACNGT	3 cut(s)	199, 209, 406
HpyCH4IV	ACGT	2 cut(s)	320, 419
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 50, 74
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	320, 419
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	426
LmnI	GCTCC	2 cut(s)	475, 483
LpnPI	CCDG	9 cut(s)	101, 128, 161, 254, 281, 298, 369, 494, 540
Lsp1109I	GCAGC	1 cut(s)	5
LweI	GCATC	2 cut(s)	39, 115
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	2 cut(s)	255, 516
MaeII	ACGT	2 cut(s)	320, 419
MaeIII	GTNAC	3 cut(s)	118, 209, 358
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	1 cut(s)	436
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	3 cut(s)	55, 480, 548
MluCI	AATT	6 cut(s)	86, 108, 140, 388, 450, 535
MnlI	CCTC	3 cut(s)	197, 370, 373
MroXI	GAANNNNTTC	3 cut(s)	224, 249, 537
MseI	TTAA	3 cut(s)	62, 435, 571
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	2 cut(s)	116, 269
MvaI	CCWGG	2 cut(s)	116, 269
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	27, 50, 74
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	294, 504
NmuCI	GTSAC	2 cut(s)	118, 358
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PdmI	GAANNNNTTC	3 cut(s)	224, 249, 537
PfeI	GAWTC	1 cut(s)	331
Pfl23II	CGTACG	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	321
PsiI	TTATAA	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	114, 267
PspGI	CCWGG	2 cut(s)	114, 267
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	294, 504
PspPI	GGNCC	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	3 cut(s)	323, 403, 461
RsaNI	GTAC	3 cut(s)	322, 402, 460
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	62, 435, 571
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	116, 269
SduI	GDGCHC	3 cut(s)	55, 480, 548
SetI	ASST	8 cut(s)	62, 120, 150, 323, 422, 480, 504, 532
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	39, 115
SinI	GGWCC	1 cut(s)	444
SnaBI	TACGTA	1 cut(s)	321
Sse9I	AATT	6 cut(s)	86, 108, 140, 388, 450, 535
SsiI	CCGC	2 cut(s)	77, 519
SspMI	CTAG	2 cut(s)	255, 516
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	114, 267
TaaI	ACNGT	3 cut(s)	199, 209, 406
TaiI	ACGT	2 cut(s)	323, 422
TaqI	TCGA	1 cut(s)	104
TasI	AATT	6 cut(s)	86, 108, 140, 388, 450, 535
TatI	WGTACW	2 cut(s)	401, 459
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	62, 435, 571
Tru9I	TTAA	3 cut(s)	62, 435, 571
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	2 cut(s)	118, 358
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	2 cut(s)	118, 358
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	2 cut(s)	388, 535
XmnI	GAANNNNTTC	3 cut(s)	224, 249, 537
XspI	CTAG	2 cut(s)	255, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.