Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007468

Physical Location & Seq

Genomic Coordinates Reverse (-)

2104018 .. 2106650

Gene Structure 2633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGGCGTCAAGCATTGGATGTATTTGTTAACCGAATAGCTTCACATCATGAACTTCAGCAAAGTGAAGATCTGAGAACCTTCTTACAAGCAGATGAAGAGACAATGGAGAGGTTAAGGTTTCATGAGACTGGTATCTTTAAGAAGCCAGCAGATTGGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGCGATGTGGTTCTCGGAAAGGAAAAGCCGGTGGAAGAGTCAAATCCTGAATATGAGAAGTTGAAACACTACATTTTTGAGCTTGAAAACCACTTGGCTGAAGCCCAGAAGCATGCATACCGTCTTGTAAAGAGGCACAGAGAACTGGGACAGTCTCTAGCAGATTTTGGGAAATCAGCCAAGCTCCTAGGAGCTTGTGAAGGTAATGCTCTTGGAAAGGCCTTTACCGAGCTTGGGGCGAAGTCGGAGACATTATCAATTAAGCTGCAAAAGGAGGCCGAACAACTGTTAATGAATTTTGAAGAACCTTTGAAAGATTACGTACGTGCCGTGCAATCTATTAAGGCCACAATAGCTGAGAGAGCAAATGCTTTCAGGCAACAGTGTGAACTTGCTGAAACAATTAAGTTGAAGGAGATAAATCTTGACAAGCTCATGTTGACCAGATCAGACAGGGTGGGAGAAGCTGAGCACGAGTACAAGGAGTTGAAGGCTGAGGGTGAGGAAGCAACCAGAAGATTTGAAACGATAGTGCGACTGATGAGTGAAGAGATAGTTCGCTTTCAGGAACAAAAAACAAGAGACATGGGGGTTGCTTTCCATGAATTTGCCAAGGGACAGGCACGCCTGGCAAACAGTATAGCAGACGCTTGGCGAAGTCTTCTACCTAAGCTCGAATCTTGCTCCCCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006897 GO:0006996 GO:0007034 GO:0007041 GO:0007275 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009987 GO:0010008 GO:0010252 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022622 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042592 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

296

Amino Acids

34.02

Weight (kDa)

6.2

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps5	PF09325	62 - 287	1.5e-24	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06140
fragaria_vesca	FvH4_6g19390 FvH4_6g19390 FvH4_6g19390
malus_domestica	MD12G1029600.v1.1 MD14G1029900.v1.1
prunus_persica	Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1
pyrus_communis	pycom12g02800 pycom14g02770
rosa_chinensis	RchiOBHm_Chr3g0474681
rosa_laevigata	RLG00000023902
rosa_multiflora	Rmu_sc0001126.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406980
rosa_rugosa	Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700
rosa_samantha	Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700
rosa_wichuraiana	Rw3G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	487, 797
AcuI	CTGAAG	2 cut(s)	41, 312
AcyI	GRCGYC	1 cut(s)	7
AfaI	GTAC	3 cut(s)	180, 516, 671
AfiI	CCNNNNNNNGG	1 cut(s)	426
AgsI	TTSAA	8 cut(s)	172, 256, 278, 494, 505, 604, 682, 716
AjnI	CCWGG	1 cut(s)	819
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	5 cut(s)	95, 122, 351, 434, 768
AoxI	GGCC	3 cut(s)	411, 468, 537
ApeKI	GCWGC	1 cut(s)	457
ApoI	RAATTY	2 cut(s)	487, 797
Asp700I	GAANNNNTTC	1 cut(s)	40
AspA2I	CCTAGG	1 cut(s)	379
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	1 cut(s)	704
AvrII	CCTAGG	1 cut(s)	379
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BauI	CACGAG	1 cut(s)	665
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	1 cut(s)	666
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	444
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	821
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	5 cut(s)	95, 122, 351, 434, 768
BfaI	CTAG	2 cut(s)	350, 380
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	1 cut(s)	458
BlnI	CCTAGG	1 cut(s)	379
BlpI	GCTNAGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	459
Bme1390I	CCNGG	2 cut(s)	821, 881
BmrFI	CCNGG	2 cut(s)	821, 881
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	845
Bpu10I	CCTNAGC	2 cut(s)	687, 861
Bpu1102I	GCTNAGC	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	881
BsaAI	YACGTR	2 cut(s)	514, 518
BsaBI	GATNNNNATC	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	7
BsaJI	CCNNGG	3 cut(s)	379, 804, 879
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	136, 342
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	821
BseDI	CCNNGG	3 cut(s)	379, 804, 879
BseGI	GGATG	3 cut(s)	25, 165, 181
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMII	CTCAG	4 cut(s)	65, 540, 651, 678
BseNI	ACTGG	2 cut(s)	136, 342
BseXI	GCAGC	1 cut(s)	444
BshFI	GGCC	3 cut(s)	413, 470, 539
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	221, 881
BsiWI	CGTACG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	354, 822
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmAI	GTCTC	5 cut(s)	95, 122, 351, 434, 768
BsmFI	GGGAC	2 cut(s)	354, 822
BsnI	GGCC	3 cut(s)	413, 470, 539
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	70, 638
Bsp1720I	GCTNAGC	1 cut(s)	660
BspANI	GGCC	3 cut(s)	413, 470, 539
BspCNI	CTCAG	4 cut(s)	66, 541, 652, 679
BspHI	TCATGA	2 cut(s)	49, 124
BsrFI	RCCGGY	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	136, 342
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	379, 804, 879
BssMI	GATC	2 cut(s)	70, 638
BssNI	GRCGYC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	665
BssT1I	CCWWGG	2 cut(s)	379, 804
Bst2BI	CACGAG	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	821
Bst4CI	ACNGT	5 cut(s)	314, 345, 480, 576, 830
Bst6I	CTCTTC	3 cut(s)	93, 222, 735
BstACI	GRCGYC	1 cut(s)	7
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	2 cut(s)	514, 518
BstC8I	GCNNGC	3 cut(s)	150, 306, 817
BstDEI	CTNAG	5 cut(s)	74, 549, 660, 687, 861
BstF5I	GGATG	3 cut(s)	25, 165, 181
BstKTI	GATC	2 cut(s)	73, 641
BstMAI	GTCTC	5 cut(s)	95, 122, 351, 434, 768
BstMBI	GATC	2 cut(s)	70, 638
BstMWI	GCNNNNNNNGC	3 cut(s)	545, 554, 821
BstNI	CCWGG	1 cut(s)	821
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	819, 879
BstSNI	TACGTA	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	444
BstV2I	GAAGAC	1 cut(s)	845
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	413, 470, 539
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	25, 165, 181
BtsIMutI	CAGTG	1 cut(s)	581
Cac8I	GCNNGC	3 cut(s)	150, 306, 817
CciI	TCATGA	2 cut(s)	49, 124
Cfr10I	RCCGGY	1 cut(s)	220
CseI	GACGC	1 cut(s)	848
Csp6I	GTAC	3 cut(s)	179, 515, 670
CviAII	CATG	6 cut(s)	50, 125, 305, 628, 778, 794
CviQI	GTAC	3 cut(s)	179, 515, 670
DdeI	CTNAG	5 cut(s)	74, 549, 660, 687, 861
DpnI	GATC	2 cut(s)	72, 640
DpnII	GATC	2 cut(s)	70, 638
Eam1104I	CTCTTC	3 cut(s)	93, 222, 735
EarI	CTCTTC	3 cut(s)	93, 222, 735
Eco105I	TACGTA	1 cut(s)	514
Eco130I	CCWWGG	2 cut(s)	379, 804
Eco147I	AGGCCT	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	41, 312
EcoRII	CCWGG	1 cut(s)	819
EcoT14I	CCWWGG	2 cut(s)	379, 804
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	2 cut(s)	379, 804
FaeI	CATG	6 cut(s)	53, 128, 308, 631, 781, 797
FaiI	YATR	9 cut(s)	51, 126, 246, 306, 310, 629, 779, 795, 833
FaqI	GGGAC	2 cut(s)	354, 822
FatI	CATG	6 cut(s)	49, 124, 304, 627, 777, 793
Fnu4HI	GCNGC	1 cut(s)	458
FokI	GGATG	3 cut(s)	32, 172, 188
Fsp4HI	GCNGC	1 cut(s)	458
FspBI	CTAG	2 cut(s)	350, 380
GluI	GCNGC	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	413, 470, 539
HapII	CCGG	2 cut(s)	221, 881
HgaI	GACGC	1 cut(s)	848
Hin1I	GRCGYC	1 cut(s)	7
Hin1II	CATG	6 cut(s)	53, 128, 308, 631, 781, 797
HincII	GTYRAC	2 cut(s)	31, 633
HindII	GTYRAC	2 cut(s)	31, 633
HinfI	GANTC	2 cut(s)	230, 869
HpaI	GTTAAC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	221, 881
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	3 cut(s)	31, 581, 633
Hpy188I	TCNGA	4 cut(s)	75, 209, 439, 643
Hpy188III	TCNNGA	5 cut(s)	50, 125, 239, 617, 758
Hpy8I	GTNNAC	3 cut(s)	31, 581, 633
HpyAV	CCTTC	4 cut(s)	91, 386, 598, 676
HpyCH4III	ACNGT	5 cut(s)	314, 345, 480, 576, 830
HpyCH4IV	ACGT	2 cut(s)	513, 517
HpyCH4V	TGCA	4 cut(s)	163, 308, 460, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	545, 554, 821
HpyF3I	CTNAG	5 cut(s)	74, 549, 660, 687, 861
HpySE526I	ACGT	2 cut(s)	513, 517
Hsp92I	GRCGYC	1 cut(s)	7
Hsp92II	CATG	6 cut(s)	53, 128, 308, 631, 781, 797
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	70, 638
LmnI	GCTCC	3 cut(s)	381, 383, 881
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	350, 380
MaeII	ACGT	2 cut(s)	513, 517
MalI	GATC	2 cut(s)	72, 640
MboI	GATC	2 cut(s)	70, 638
MboII	GAAGA	8 cut(s)	80, 110, 160, 239, 506, 720, 752, 845
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	4 cut(s)	450, 487, 594, 797
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	105, 318, 460, 682, 688
Mph1103I	ATGCAT	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	7 cut(s)	30, 116, 141, 453, 482, 534, 597
MspI	CCGG	2 cut(s)	221, 881
MspR9I	CCNGG	2 cut(s)	821, 881
MvaI	CCWGG	1 cut(s)	821
MwoI	GCNNNNNNNGC	3 cut(s)	545, 554, 821
NciI	CCSGG	1 cut(s)	881
NdeII	GATC	2 cut(s)	70, 638
NlaIII	CATG	6 cut(s)	53, 128, 308, 631, 781, 797
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	1 cut(s)	308
PaeI	GCATGC	1 cut(s)	308
PagI	TCATGA	2 cut(s)	49, 124
PceI	AGGCCT	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	869
Pfl23II	CGTACG	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	459
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	2 cut(s)	514, 518
Psp6I	CCWGG	1 cut(s)	819
PspGI	CCWGG	1 cut(s)	819
PspLI	CGTACG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	3 cut(s)	180, 516, 671
RsaNI	GTAC	3 cut(s)	179, 515, 670
SaqAI	TTAA	7 cut(s)	30, 116, 141, 453, 482, 534, 597
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	2 cut(s)	70, 638
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	821, 881
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	1 cut(s)	150
SnaBI	TACGTA	1 cut(s)	514
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	4 cut(s)	450, 487, 594, 797
SseBI	AGGCCT	1 cut(s)	413
SspMI	CTAG	2 cut(s)	350, 380
StuI	AGGCCT	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	819, 879
StyI	CCWWGG	2 cut(s)	379, 804
TaaI	ACNGT	5 cut(s)	314, 345, 480, 576, 830
TaiI	ACGT	2 cut(s)	516, 520
TaqI	TCGA	1 cut(s)	867
TasI	AATT	4 cut(s)	450, 487, 594, 797
TatI	WGTACW	2 cut(s)	178, 669
TfiI	GAWTC	1 cut(s)	869
Tru1I	TTAA	7 cut(s)	30, 116, 141, 453, 482, 534, 597
Tru9I	TTAA	7 cut(s)	30, 116, 141, 453, 482, 534, 597
TscAI	CASTG	1 cut(s)	581
TseI	GCWGC	1 cut(s)	457
TspDTI	ATGAA	5 cut(s)	66, 111, 113, 500, 810
TspRI	CASTG	1 cut(s)	581
XapI	RAATTY	2 cut(s)	487, 797
XceI	RCATGY	1 cut(s)	308
XmaJI	CCTAGG	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	2 cut(s)	350, 380
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.