pycom14g03310

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010339
Physical Location & Seq
Forward (+)
2649104 .. 2651291
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGTCTTCAATGGAAGAAACACCTTCCCCTCCAAAGCGTCGATTGTCGTGCGCCACCTGCTTCGACGCCCTCTGGTTTTGCTATTCTCCGGTGCATCAGATGCAACAGTATTATAGACTTGGGTCACTTGATAACTGTTCTGGGAAATGGACTTCTCTGGTTGATTGCTTGGTTTTGAAGACGAAGCGGTCATCTGAAGTGCAGGAAATTTTGGAGTCTCGGGAGAAAGGCAAGTCTCACATCTGGACTTTTCGAACTCCAGAAGAAGCATCAGTTAACTGGAAAGAACAATTTGGAGATTTAGATGAAGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

106

Amino Acids

12.23

Weight (kDa)

5.42

Isoelectric Point (pI)

72.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 15 - 79 1e-19 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
AasI GACNNNNNNGTC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 65
AciI CCGC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 66
AgsI TTSAA 2 cut(s) 9, 178
Alw26I GTCTC 2 cut(s) 222, 240
Ama87I CYCGRG 1 cut(s) 219
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BcoDI GTCTC 2 cut(s) 222, 240
BfuAI ACCTGC 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 219
BmsI GCATC 3 cut(s) 90, 103, 278
BoxI GACNNNNGTC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 222, 240
BsoBI CYCGRG 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 253
BspACI CCGC 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 284
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 108, 137
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 253
BstHHI GCGC 1 cut(s) 53
BstMAI GTCTC 2 cut(s) 222, 240
BstMWI GCNNNNNNNGC 2 cut(s) 57, 100
BstPAI GACNNNNGTC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 185
BveI ACCTGC 1 cut(s) 65
CfoI GCGC 1 cut(s) 53
CseI GACGC 2 cut(s) 26, 74
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 219
FaiI YATR 1 cut(s) 114
GlaI GCGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 243
HapII CCGG 1 cut(s) 89
HgaI GACGC 2 cut(s) 26, 74
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 1 cut(s) 215
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 99, 196
Hpy188III TCNNGA 3 cut(s) 221, 244, 260
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 2 cut(s) 42, 68
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 108, 137
HpyCH4V TGCA 3 cut(s) 94, 103, 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 100
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 277
LpnPI CCDG 9 cut(s) 58, 70, 102, 126, 143, 188, 229, 265, 273
LweI GCATC 3 cut(s) 90, 103, 278
MaeIII GTNAC 1 cut(s) 123
MboII GAAGA 3 cut(s) 26, 190, 275
MluCI AATT 2 cut(s) 207, 290
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 2 cut(s) 39, 80
MseI TTAA 1 cut(s) 276
MspI CCGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 57, 100
NmuCI GTSAC 1 cut(s) 123
NspV TTCGAA 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PshAI GACNNNNGTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 276
SchI GAGTC 1 cut(s) 224
SetI ASST 2 cut(s) 25, 59
SfaNI GCATC 3 cut(s) 90, 103, 278
SfuI TTCGAA 1 cut(s) 253
Sse9I AATT 2 cut(s) 207, 290
SsiI CCGC 1 cut(s) 187
TaaI ACNGT 2 cut(s) 108, 137
TaqI TCGA 3 cut(s) 40, 63, 253
TasI AATT 2 cut(s) 207, 290
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 123
XapI RAATTY 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.