Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013151

Physical Location & Seq

Genomic Coordinates Reverse (-)

2925350 .. 2926973

Gene Structure 1624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCTATCCATGGCTTCCACAAGTACTTCTTGTTCTTCTCCCCTCTGCAACAAAATCTCCAATTTCTCAATCTCCCACTTACTCCCTCCAATCCCTACCCACTTACCACCACACATTAAACCCCTAAAACCCCTCAAGCTTAAAGCCCGTTTCCACAGCTTCCCCCACCCCTCTCCTCCCCCCAGTTTCCACCGCTCGTTGGCGGCGTTCGACGGCTTTGAAGCTGAAGAAGATAGTGAAAGCCAAGGCGAACAAGACCCAGAAGCACGGCGCCATGAAAAGCAAGAAGAAGAAGAAGAAGAAGAAGAGCAAAGAGAGGAAGTGGCAAAGATATCAGACGCTGGGAGGCTATATGTGGGGAATTTGCCTTATAACTTGACTTCAACCCAATTGGCTGAGGTTTTCGGGGAGGCTGGCACGGTGGTTTTTTCAGAGATTATTTATGACAGAGTCACAGATAGAAGCAGGGGATTTGGATTTGTTACAATGTCTACTGTTGAGGAAGCTCAGGATGCCATTAGGATGTTTGATGGCTCTCAAGTAGGAGGTAGAACTGTGAAGGTGAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGGAAATGTTAGGACCCAACAGACCAAGGACTGGGTTCAAGGTGTACATAGATAGCCCTCATAAGGTTTATGCAGGAAACCTTAGTTGGGGTTTAACTTCACAGGGTCTTAAGGATGCCTTTGAAGACCAGCCAGGGCTGTTGGGTGCCAAGGTCATATATGAGAGGGTTTCTGGAAGATCCAGAGGTTTCGGGTTTGTGACATTCGAAACTAATGAGGCTGCGGAATCAGCTGTCGTTGCCATGAATGGAGTGGAGGTTGATGGGCGGCCTTTGCGATTAAATATGGCGGCAGAGAGAGCAAGGACCGTTGTTTCCTCTCCAGCAGCATCAGAAACAACTGCACAAGACACAGACAGCAGTGACGTGGTTTCTCCACCAGCATCAGAAACAACTACAGACAACACGGACAACAGTGCATTGGTCTCTCCTCCTGCGTCCGATACAACCACTGACAACACAGACAACAGTGAATTGGTCTCCACTCCGGCGTCGGATACAACCACAGAAGACGCAGACAGCGGGGAATTGGTTTCCAGCGTTAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

382

Amino Acids

41.22

Weight (kDa)

4.67

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	117 - 187	1.8e-18	RNA recognition motif
RRM_1	PF00076	221 - 291	4.2e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52380
fragaria_vesca	FvH4_6g20490 FvH4_6g20490
malus_domestica	MD12G1042000.v1.1 MD14G1041200.v1.1
prunus_persica	Prupe.7G093200_v2.0.a1
pyrus_communis	pycom12g03670 pycom14g03500
rosa_chinensis	RchiOBHm_Chr3g0476371
rosa_laevigata	RLG00000023776
rosa_multiflora	Rmu_sc0000114.1_g000008
rosa_roxburghii	Rroxscaffold_6G00405360
rosa_rugosa	Rorug03G0153800
rosa_samantha	Rh3AG205000 Rh3BG236600 Rh3CG231100 Rh3DG230900
rosa_wichuraiana	Rw3G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccB1I	GGYRCC	2 cut(s)	270, 740
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	6 cut(s)	193, 203, 818, 862, 884, 1116
AclWI	GGATC	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	2 cut(s)	271, 1085
AfaI	GTAC	2 cut(s)	25, 641
AfiI	CCNNNNNNNGG	5 cut(s)	199, 587, 626, 658, 682
AflII	CTTAAG	1 cut(s)	704
AgsI	TTSAA	4 cut(s)	221, 384, 634, 719
AjiI	CACGTC	1 cut(s)	961
AjnI	CCWGG	1 cut(s)	727
AjuI	GAANNNNNNNTTGG	2 cut(s)	664, 696
AluBI	AGCT	5 cut(s)	139, 159, 224, 506, 827
AluI	AGCT	5 cut(s)	139, 159, 224, 506, 827
Alw26I	GTCTC	2 cut(s)	1024, 1078
AlwI	GGATC	1 cut(s)	768
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	863
ApeKI	GCWGC	2 cut(s)	815, 920
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	608, 900
AsuHPI	GGTGA	2 cut(s)	574, 602
AsuII	TTCGAA	1 cut(s)	801
AvaII	GGWCC	2 cut(s)	608, 900
BanI	GGYRCC	2 cut(s)	270, 740
BbsI	GAAGAC	2 cut(s)	726, 1110
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	802, 932
BccI	CCATC	2 cut(s)	524, 851
BceAI	ACGGC	2 cut(s)	229, 284
BciT130I	CCWGG	1 cut(s)	729
BciVI	GTATCC	1 cut(s)	1084
BcoDI	GTCTC	2 cut(s)	1024, 1078
BfmI	CTRYAG	1 cut(s)	990
BfoI	RGCGCY	1 cut(s)	274
BfrI	CTTAAG	1 cut(s)	704
BfuI	GTATCC	1 cut(s)	1084
BisI	GCNGC	5 cut(s)	204, 816, 863, 885, 921
BlsI	GCNGC	5 cut(s)	205, 817, 864, 886, 922
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	2 cut(s)	608, 900
BmgBI	CACGTC	1 cut(s)	961
BmgT120I	GGNCC	2 cut(s)	608, 900
BmiI	GGNNCC	3 cut(s)	272, 610, 742
BmrFI	CCNGG	1 cut(s)	729
BmrI	ACTGGG	2 cut(s)	177, 636
BmsI	GCATC	4 cut(s)	502, 700, 932, 986
BmuI	ACTGGG	2 cut(s)	177, 636
BpiI	GAAGAC	2 cut(s)	726, 1110
BpmI	CTGGAG	1 cut(s)	900
Bpu10I	CCTNAGC	2 cut(s)	396, 507
Bpu14I	TTCGAA	1 cut(s)	801
BpuEI	CTTGAG	2 cut(s)	119, 522
BsaHI	GRCGYC	2 cut(s)	271, 1085
BsaI	GGTCTC	2 cut(s)	1024, 1078
BsaJI	CCNNGG	5 cut(s)	9, 244, 620, 728, 744
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 837, 867
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 587, 626, 658, 682
Bse1I	ACTGG	2 cut(s)	183, 631
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	5 cut(s)	9, 244, 620, 728, 744
BseGI	GGATG	3 cut(s)	517, 528, 715
BseLI	CCNNNNNNNGG	5 cut(s)	199, 587, 626, 658, 682
BseMII	CTCAG	2 cut(s)	387, 521
BseNI	ACTGG	2 cut(s)	183, 631
BseRI	GAGGAG	3 cut(s)	165, 600, 1014
BseXI	GCAGC	2 cut(s)	802, 932
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	1 cut(s)	865
BshNI	GGYRCC	2 cut(s)	270, 740
BsiSI	CCGG	1 cut(s)	1082
BslI	CCNNNNNNNGG	5 cut(s)	199, 587, 626, 658, 682
BsmAI	GTCTC	2 cut(s)	1024, 1078
BsnI	GGCC	1 cut(s)	865
Bso31I	GGTCTC	2 cut(s)	1024, 1078
Bsp119I	TTCGAA	1 cut(s)	801
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	1 cut(s)	773
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	6 cut(s)	193, 203, 818, 862, 884, 1116
BspANI	GGCC	1 cut(s)	865
BspCNI	CTCAG	2 cut(s)	388, 520
BspLI	GGNNCC	3 cut(s)	272, 610, 742
BspPI	GGATC	1 cut(s)	768
BspQI	GCTCTTC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	801
BspT107I	GGYRCC	2 cut(s)	270, 740
BspTI	CTTAAG	1 cut(s)	704
BspTNI	GGTCTC	2 cut(s)	1024, 1078
BsrBI	CCGCTC	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	183, 631
BssECI	CCNNGG	5 cut(s)	9, 244, 620, 728, 744
BssMI	GATC	1 cut(s)	773
BssNI	GRCGYC	2 cut(s)	271, 1085
BssT1I	CCWWGG	4 cut(s)	9, 244, 620, 744
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	6 cut(s)	421, 496, 556, 904, 1010, 1064
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	2 cut(s)	271, 1085
BstAFI	CTTAAG	1 cut(s)	704
BstAUI	TGTACA	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	801
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	3 cut(s)	396, 507, 677
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	517, 528, 715
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	1 cut(s)	776
BstMAI	GTCTC	2 cut(s)	1024, 1078
BstMBI	GATC	1 cut(s)	773
BstMWI	GCNNNNNNNGC	5 cut(s)	512, 824, 833, 868, 893
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	727
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	2 cut(s)	802, 932
BstV2I	GAAGAC	2 cut(s)	726, 1110
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	1084
BsuRI	GGCC	1 cut(s)	865
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	961
BtsCI	GGATG	3 cut(s)	517, 528, 715
BtsI	GCAGTG	1 cut(s)	961
BtsIMutI	CAGTG	4 cut(s)	961, 1015, 1044, 1069
Cac8I	GCNNGC	1 cut(s)	415
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	608, 900
CseI	GACGC	4 cut(s)	347, 1020, 1074, 1115
Csp6I	GTAC	2 cut(s)	24, 640
CviAII	CATG	3 cut(s)	10, 275, 838
CviQI	GTAC	2 cut(s)	24, 640
DdeI	CTNAG	3 cut(s)	396, 507, 677
DinI	GGCGCC	1 cut(s)	272
DpnI	GATC	1 cut(s)	775
DpnII	GATC	1 cut(s)	773
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	4 cut(s)	9, 244, 620, 744
Eco31I	GGTCTC	2 cut(s)	1024, 1078
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	608, 900
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	727
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	4 cut(s)	9, 244, 620, 744
EgeI	GGCGCC	1 cut(s)	272
EheI	GGCGCC	1 cut(s)	272
ErhI	CCWWGG	4 cut(s)	9, 244, 620, 744
FaeI	CATG	3 cut(s)	13, 278, 841
FalI	AAGNNNNNCTT	6 cut(s)	13, 45, 551, 583, 698, 730
FatI	CATG	3 cut(s)	9, 274, 837
FauI	CCCGC	1 cut(s)	1109
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	5 cut(s)	204, 816, 863, 885, 921
FokI	GGATG	3 cut(s)	524, 535, 722
Fsp4HI	GCNGC	5 cut(s)	204, 816, 863, 885, 921
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	5 cut(s)	204, 816, 863, 885, 921
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	900
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	865
HapII	CCGG	1 cut(s)	1082
HgaI	GACGC	4 cut(s)	347, 1020, 1074, 1115
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	2 cut(s)	271, 1085
Hin1II	CATG	3 cut(s)	13, 278, 841
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	2 cut(s)	450, 821
HpaII	CCGG	1 cut(s)	1082
HphI	GGTGA	2 cut(s)	574, 602
Hpy166II	GTNNAC	3 cut(s)	492, 565, 640
Hpy188I	TCNGA	7 cut(s)	337, 433, 928, 982, 1036, 1090, 1145
Hpy188III	TCNNGA	3 cut(s)	509, 768, 777
Hpy8I	GTNNAC	3 cut(s)	492, 565, 640
Hpy99I	CGWCG	2 cut(s)	215, 1090
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	6 cut(s)	421, 496, 556, 904, 1010, 1064
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	4 cut(s)	48, 668, 938, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	512, 824, 833, 868, 893
HpyF3I	CTNAG	3 cut(s)	396, 507, 677
HpySE526I	ACGT	1 cut(s)	960
Hsp92I	GRCGYC	2 cut(s)	271, 1085
Hsp92II	CATG	3 cut(s)	13, 278, 841
HspAI	GCGC	1 cut(s)	271
KasI	GGCGCC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	773
LguI	GCTCTTC	1 cut(s)	300
Lsp1109I	GCAGC	2 cut(s)	802, 932
LweI	GCATC	4 cut(s)	502, 700, 932, 986
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	4 cut(s)	451, 481, 793, 956
MalI	GATC	1 cut(s)	775
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	1 cut(s)	773
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	1 cut(s)	773
MluCI	AATT	5 cut(s)	61, 361, 389, 1067, 1121
Mly113I	GGCGCC	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	1 cut(s)	1068
MseI	TTAA	5 cut(s)	117, 141, 689, 705, 875
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	827, 1116
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	1 cut(s)	1082
MspR9I	CCNGG	1 cut(s)	729
MunI	CAATTG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	5 cut(s)	512, 824, 833, 868, 893
NarI	GGCGCC	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	773
NlaIII	CATG	3 cut(s)	13, 278, 841
NlaIV	GGNNCC	3 cut(s)	272, 610, 742
NmuCI	GTSAC	3 cut(s)	451, 793, 956
NspV	TTCGAA	1 cut(s)	801
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	821
PflFI	GACNNNGTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	5 cut(s)	205, 817, 864, 886, 922
PleI	GAGTC	1 cut(s)	458
PluTI	GGCGCC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	458
PpuMI	RGGWCCY	1 cut(s)	608
PsiI	TTATAA	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	3 cut(s)	272, 610, 742
PspPI	GGNCC	2 cut(s)	608, 900
PspPPI	RGGWCCY	1 cut(s)	608
PsrI	GAACNNNNNNTAC	2 cut(s)	16, 48
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	773
PsyI	GACNNNGTC	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	2 cut(s)	25, 641
RsaNI	GTAC	2 cut(s)	24, 640
RseI	CAYNNNNRTG	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	117, 141, 689, 705, 875
SatI	GCNGC	5 cut(s)	204, 816, 863, 885, 921
Sau3AI	GATC	1 cut(s)	773
Sau96I	GGNCC	2 cut(s)	608, 900
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	729
SfaNI	GCATC	4 cut(s)	502, 700, 932, 986
SfcI	CTRYAG	1 cut(s)	990
SfoI	GGCGCC	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	801
SinI	GGWCC	2 cut(s)	608, 900
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	134, 537, 704
SmoI	CTYRAG	3 cut(s)	134, 537, 704
Sse9I	AATT	5 cut(s)	61, 361, 389, 1067, 1121
SsiI	CCGC	6 cut(s)	193, 203, 818, 862, 884, 1116
SspDI	GGCGCC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	4 cut(s)	9, 244, 620, 744
TaaI	ACNGT	6 cut(s)	421, 496, 556, 904, 1010, 1064
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	2 cut(s)	210, 801
TasI	AATT	5 cut(s)	61, 361, 389, 1067, 1121
TatI	WGTACW	2 cut(s)	23, 639
TauI	GCSGC	3 cut(s)	206, 865, 887
TfiI	GAWTC	1 cut(s)	821
Tru1I	TTAA	5 cut(s)	117, 141, 689, 705, 875
Tru9I	TTAA	5 cut(s)	117, 141, 689, 705, 875
TscAI	CASTG	4 cut(s)	961, 1015, 1051, 1069
TseFI	GTSAC	3 cut(s)	451, 793, 956
TseI	GCWGC	2 cut(s)	815, 920
Tsp45I	GTSAC	3 cut(s)	451, 793, 956
TspDTI	ATGAA	2 cut(s)	291, 854
TspGWI	ACGGA	1 cut(s)	1016
TspRI	CASTG	4 cut(s)	961, 1015, 1051, 1069
Tth111I	GACNNNGTC	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	608, 900
XapI	RAATTY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XmiI	GTMKAC	1 cut(s)	491
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.