pycom14g03800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0005886
Physical Location & Seq
Forward (+)
3233406 .. 3234950
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGGCGATGGTTGCTCCACCCGGTTCTCTACCTCCTGCATCTCTGAAGATTGGTGGTGGGACGGCAACAGTCAAGAGAAAGACACCATCTCAACTGAGAGGAGAACAGCGGATGAATGCTGTGGAGATAAGCGATGAATCTCCAGCTCCTTTGCTTGGTTCTACAAATGAAGCAGAAAATGGGCTAAAGAAACAAGAACTGTCAAGGAATCCTAGATACATTGACATTCGTATGGATGAAGTTTACCCTGCAAAAAAATCTAGGTTCAAGATACTTAATGCTAAGGAAAGTATTTCAATGGAGAAACTTAGCAGTGTGAAGAATCTTTCTTTGCTCTCTAATTTGGCTTCGAAGAGGAAACAACAACTTTCTGGTTCCCAAAATGTAGCTTCTGCTGAACATACCAAAGAAGGCACGTCAAAAGTTTATCGAACTATTGAAAAGTGTAGTCAAACTACTTTCTGTAGTGTTACTGAGCTTTCATCAGGCGGTGACAGATTGTCGGGCTTTGCAGCTGTCGATGTGGATAAAGCATTAAAAGGAATAGATGCCCAGGAATCTACAATTGGCTTACCTGCTTATATTTCTGAAAGAAGTGGTCGATCCTACATCAACTTGTTTAGGCGACTTTTGCTTGCCTGGTGGAAAGGTTCCTCTGGATTTTACTTTGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.58

Weight (kDa)

9.62

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AciI CCGC 2 cut(s) 109, 489
AclWI GGATC 1 cut(s) 597
AcuI CTGAAG 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 4 cut(s) 268, 297, 440, 671
AhdI GACNNNNNGTC 1 cut(s) 499
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 2 cut(s) 552, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 4 cut(s) 146, 389, 478, 515
AluI AGCT 4 cut(s) 146, 389, 478, 515
AlwI GGATC 1 cut(s) 597
ApeKI GCWGC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 503
AsuII TTCGAA 1 cut(s) 350
BbvI GCAGC 1 cut(s) 524
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 554, 640
BcnI CCSGG 1 cut(s) 21
BfaI CTAG 3 cut(s) 213, 261, 676
BfmI CTRYAG 1 cut(s) 463
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
Bme1390I CCNGG 3 cut(s) 21, 554, 640
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgBI CACGTC 1 cut(s) 417
BmiI GGNNCC 2 cut(s) 376, 652
BmrFI CCNGG 3 cut(s) 21, 554, 640
BmsI GCATC 2 cut(s) 47, 538
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 552
Bsc4I CCNNNNNNNGG 1 cut(s) 155
BseBI CCWGG 2 cut(s) 554, 640
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 2 cut(s) 117, 241
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 86, 465
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 524
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 350
Bsp143I GATC 1 cut(s) 602
BspACI CCGC 2 cut(s) 109, 489
BspCNI CTCAG 2 cut(s) 87, 466
BspLI GGNNCC 2 cut(s) 376, 652
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 1 cut(s) 597
BspT104I TTCGAA 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 1 cut(s) 602
Bst2UI CCWGG 2 cut(s) 554, 640
Bst4CI ACNGT 2 cut(s) 70, 201
Bst6I CTCTTC 1 cut(s) 347
BstBI TTCGAA 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 4 cut(s) 95, 282, 308, 474
BstF5I GGATG 2 cut(s) 117, 241
BstKTI GATC 1 cut(s) 605
BstMBI GATC 1 cut(s) 602
BstMWI GCNNNNNNNGC 2 cut(s) 11, 631
BstNI CCWGG 2 cut(s) 554, 640
BstSCI CCNGG 3 cut(s) 19, 552, 638
BstSFI CTRYAG 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 524
BtgZI GCGATG 2 cut(s) 20, 147
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 2 cut(s) 117, 241
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 636
CviJI RGCY 8 cut(s) 146, 184, 347, 389, 478, 507, 515, 570
CviKI_1 RGCY 8 cut(s) 146, 184, 347, 389, 478, 507, 515, 570
DdeI CTNAG 4 cut(s) 95, 282, 308, 474
DpnI GATC 1 cut(s) 604
DpnII GATC 1 cut(s) 602
DriI GACNNNNNGTC 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 347
Eam1105I GACNNNNNGTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 552, 638
FaiI YATR 3 cut(s) 233, 402, 582
FaqI GGGAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 2 cut(s) 124, 248
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 3 cut(s) 213, 261, 676
GluI GCNGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 126
HapII CCGG 1 cut(s) 21
HinfI GANTC 4 cut(s) 137, 208, 322, 557
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 45, 589
Hpy188III TCNNGA 3 cut(s) 73, 268, 657
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 2 cut(s) 70, 201
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 3 cut(s) 38, 251, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 631
HpyF3I CTNAG 4 cut(s) 95, 282, 308, 474
HpySE526I ACGT 1 cut(s) 416
Kzo9I GATC 1 cut(s) 602
LmnI GCTCC 2 cut(s) 19, 151
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 2 cut(s) 47, 538
MaeI CTAG 3 cut(s) 213, 261, 676
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 469, 491
MalI GATC 1 cut(s) 604
MboI GATC 1 cut(s) 602
MboII GAAGA 3 cut(s) 58, 331, 364
MfeI CAATTG 1 cut(s) 564
MluCI AATT 2 cut(s) 340, 564
MnlI CCTC 4 cut(s) 42, 92, 348, 664
MseI TTAA 2 cut(s) 276, 536
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 2 cut(s) 109, 515
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 3 cut(s) 21, 554, 640
MunI CAATTG 1 cut(s) 564
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 2 cut(s) 554, 640
MwoI GCNNNNNNNGC 2 cut(s) 11, 631
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 602
NlaIV GGNNCC 2 cut(s) 376, 652
NmuCI GTSAC 1 cut(s) 491
NspV TTCGAA 1 cut(s) 350
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 4 cut(s) 137, 208, 322, 557
PkrI GCNGC 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 552, 638
PspGI CCWGG 2 cut(s) 552, 638
PspN4I GGNNCC 2 cut(s) 376, 652
PvuII CAGCTG 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 2 cut(s) 276, 536
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 21, 554, 640
SetI ASST 9 cut(s) 34, 148, 266, 391, 419, 480, 517, 577, 652
SfaNI GCATC 2 cut(s) 47, 538
SfcI CTRYAG 1 cut(s) 463
SfuI TTCGAA 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 2 cut(s) 340, 564
SsiI CCGC 2 cut(s) 109, 489
SspMI CTAG 3 cut(s) 213, 261, 676
StyD4I CCNGG 3 cut(s) 19, 552, 638
TaaI ACNGT 2 cut(s) 70, 201
TaiI ACGT 1 cut(s) 419
TaqI TCGA 4 cut(s) 350, 430, 519, 601
TasI AATT 2 cut(s) 340, 564
TfiI GAWTC 4 cut(s) 137, 208, 322, 557
Tru1I TTAA 2 cut(s) 276, 536
Tru9I TTAA 2 cut(s) 276, 536
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 5 cut(s) 128, 150, 183, 252, 471
TspRI CASTG 1 cut(s) 319
XspI CTAG 3 cut(s) 213, 261, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.