Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005886

Physical Location & Seq

Genomic Coordinates Forward (+)

3235773 .. 3239009

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGCCGTGGCTCAGGGCTCACATTGAATTCCAAAGTCATTATTTCTGAACAATTATATTCCTGGGTTTATCCTCAATCTACCTTACCGCCTTCTCTCATACAAGTTTTGACATCATCAACAGCTGAGAGAGTGGAAACAGATTTCTTGAGAAAACGACAGGTAGCATGGGATGACTCATTTCAGAGTCTATACTACATGCTTCGTAATGGTACCTGTGATATCTTTTATGTGTGTACCCCATATTTTGTGGTAATGTTCACGGCTTGTAATGTCTCGGTGGGCTCGAAACGCATCAGCAATGCTTATATCTCCCAATCAACAAGAGCCATACGATCATTGTTAAGAGAGCATGATGTTTCTTTCACTATGCCTCTTTGCCGTTCGAAAGTAGAGCAAGTCACTCCAGATGTTCTTGTTGAGCTCTCAGAGATGGAGAAGCAGAATTTCGGCCAGACTCGGCGCTTGAGTTCCTCTTCTGATATAGATAATACCCCGGAATCATTGCTAGTTTTCAGTGGCAATAAAAATGTACATGGAGTGTTTGATATTTTGTTAAATTATAGATCGTTGTTGACTGCTTTAATGGTAATGGATGTCCCTATATTATATTCACCTGTGCCGTTTCAGAGTGCTGCCATTTCTTCTCCAGAGATTAAATGCACGGAATTGAAAAGAGCAGACCATATTGTTGCTCCTAAGAAAACCACCGCAAAAGATGGATCCATGCAAGGCTTATCTGCTGGTCTCTGCTCTAGTGTTGAAATTAAGGATCCATATCTTCCACCATGGATTATTTGCAGCCTACTTGCCCTTCTGGGCTCCGAAGAGAGAAGCTTCGAGGCGAGCTTTATGAACGAACCTTCATCAATCGGGTTGAATGTTGCTGTAGAAGCAGTTCCTGAGAAATCTGATCGTCCTGATGCGGCAGCTGAAGACTTACAAAAAAGCACCTCTGCTTTTGGTATTCCAGGAGCCATTGTTATGCCTCAGTTGCGTTTGGGTTTCTTGAAAACTTTGAAGTTCTCAAATGGTTCTTATTCGGCTTCCCTTTCTCCTACCTCAGAAGCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

39.41

Weight (kDa)

5.6

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54750 AT3G54750 AT3G54750 AT3G54750 AT3G54750
fragaria_vesca	FvH4_6g21040 FvH4_6g21040 FvH4_6g21040
malus_domestica	MD12G1046200.v1.1 MD14G1044900.v1.1
prunus_persica	Prupe.7G089700_v2.0.a1 Prupe.7G089700_v2.0.a1
pyrus_communis	pycom12g03970 pycom12g03980 pycom14g03800 pycom14g03810
rosa_chinensis	RchiOBHm_Chr3g0477411
rosa_laevigata	RLG00000023723
rosa_multiflora	Rmu_ssc0000341.1_g000018
rosa_roxburghii	Rroxscaffold_6G00404170 Rroxscaffold_6G00404650
rosa_rugosa	Rorug03G0160600 Rorug03G0160700
rosa_samantha	Rh3AG210900 Rh3BG244300 Rh3CG238100 Rh3DG237800
rosa_wichuraiana	Rw3G019110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	3 cut(s)	89, 711, 926
AclWI	GGATC	4 cut(s)	717, 730, 767, 780
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	28, 445
AcuI	CTGAAG	1 cut(s)	954
AfaI	GTAC	3 cut(s)	214, 238, 534
AgsI	TTSAA	6 cut(s)	28, 673, 764, 880, 1012, 1021
AjnI	CCWGG	2 cut(s)	62, 970
AluBI	AGCT	6 cut(s)	125, 424, 837, 849, 932, 1070
AluI	AGCT	6 cut(s)	125, 424, 837, 849, 932, 1070
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	280, 752
AlwI	GGATC	4 cut(s)	717, 730, 767, 780
AlwNI	CAGNNNCTG	2 cut(s)	902, 1070
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	3 cut(s)	635, 801, 929
ApoI	RAATTY	2 cut(s)	28, 445
Asp700I	GAANNNNTTC	1 cut(s)	897
Asp718I	GGTACC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	465
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	606
AsuII	TTCGAA	1 cut(s)	386
BamHI	GGATCC	2 cut(s)	722, 772
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	4 cut(s)	21, 287, 426, 824
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	622, 813, 941
BccI	CCATC	2 cut(s)	427, 713
BceAI	ACGGC	3 cut(s)	279, 366, 607
BciT130I	CCWGG	2 cut(s)	64, 972
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	2 cut(s)	280, 752
BfaI	CTAG	2 cut(s)	509, 756
BfmI	CTRYAG	1 cut(s)	888
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	4 cut(s)	636, 802, 927, 930
BlsI	GCNGC	4 cut(s)	637, 803, 928, 931
Bme1390I	CCNGG	3 cut(s)	64, 497, 972
BmiI	GGNNCC	5 cut(s)	214, 724, 774, 823, 976
BmrFI	CCNGG	3 cut(s)	64, 497, 972
BmsI	GCATC	2 cut(s)	303, 913
BpiI	GAAGAC	1 cut(s)	942
BpmI	CTGGAG	2 cut(s)	390, 633
Bpu10I	CCTNAGC	1 cut(s)	13
Bpu14I	TTCGAA	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	169, 487
BpuMI	CCSGG	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	777
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	4 cut(s)	7, 63, 495, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bse3DI	GCAATG	2 cut(s)	307, 503
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	64, 972
BseDI	CCNNGG	4 cut(s)	7, 63, 495, 788
BseGI	GGATG	2 cut(s)	178, 601
BseJI	GATNNNNATC	1 cut(s)	777
BseMI	GCAATG	2 cut(s)	307, 503
BseMII	CTCAG	6 cut(s)	27, 117, 441, 894, 1004, 1077
BseXI	GCAGC	3 cut(s)	622, 813, 941
BshFI	GGCC	1 cut(s)	453
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	584
BsmAI	GTCTC	2 cut(s)	280, 752
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	453
Bso31I	GGTCTC	1 cut(s)	752
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	4 cut(s)	21, 287, 426, 824
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	5 cut(s)	335, 566, 722, 772, 913
Bsp19I	CCATGG	1 cut(s)	788
BspACI	CCGC	3 cut(s)	89, 711, 926
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	6 cut(s)	26, 118, 440, 895, 1003, 1076
BspLI	GGNNCC	5 cut(s)	214, 724, 774, 823, 976
BspPI	GGATC	4 cut(s)	717, 730, 767, 780
BspT104I	TTCGAA	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	752
BsrDI	GCAATG	2 cut(s)	307, 503
BsrGI	TGTACA	1 cut(s)	532
BssECI	CCNNGG	4 cut(s)	7, 63, 495, 788
BssMI	GATC	5 cut(s)	335, 566, 722, 772, 913
BssT1I	CCWWGG	1 cut(s)	788
Bst2UI	CCWGG	2 cut(s)	64, 972
Bst6I	CTCTTC	2 cut(s)	481, 822
BstAUI	TGTACA	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	847
BstDEI	CTNAG	7 cut(s)	13, 126, 427, 699, 903, 990, 1063
BstDSI	CCRYGG	2 cut(s)	7, 788
BstF5I	GGATG	2 cut(s)	178, 601
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	5 cut(s)	338, 569, 725, 775, 916
BstMAI	GTCTC	2 cut(s)	280, 752
BstMBI	GATC	5 cut(s)	335, 566, 722, 772, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 893, 994
BstNI	CCWGG	2 cut(s)	64, 972
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	3 cut(s)	62, 495, 970
BstSFI	CTRYAG	1 cut(s)	888
BstV1I	GCAGC	3 cut(s)	622, 813, 941
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	2 cut(s)	722, 772
BstYI	RGATCY	2 cut(s)	722, 772
BsuRI	GGCC	1 cut(s)	453
BtgI	CCRYGG	2 cut(s)	7, 788
BtsCI	GGATG	2 cut(s)	178, 601
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	847
CaiI	CAGNNNCTG	2 cut(s)	902, 1070
CfoI	GCGC	1 cut(s)	465
Csp6I	GTAC	3 cut(s)	213, 237, 533
CviAII	CATG	6 cut(s)	168, 199, 353, 536, 727, 789
CviQI	GTAC	3 cut(s)	213, 237, 533
DdeI	CTNAG	7 cut(s)	13, 126, 427, 699, 903, 990, 1063
DpnI	GATC	5 cut(s)	337, 568, 724, 774, 915
DpnII	GATC	5 cut(s)	335, 566, 722, 772, 913
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	2 cut(s)	481, 822
EarI	CTCTTC	2 cut(s)	481, 822
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	788
Eco24I	GRGCYC	4 cut(s)	21, 287, 426, 824
Eco31I	GGTCTC	1 cut(s)	752
Eco32I	GATATC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	954
EcoICRI	GAGCTC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	62, 970
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	788
EcoT38I	GRGCYC	4 cut(s)	21, 287, 426, 824
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	6 cut(s)	171, 202, 356, 539, 730, 792
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	6 cut(s)	167, 198, 352, 535, 726, 788
Fnu4HI	GCNGC	4 cut(s)	636, 802, 927, 930
FokI	GGATG	2 cut(s)	185, 608
FriOI	GRGCYC	4 cut(s)	21, 287, 426, 824
Fsp4HI	GCNGC	4 cut(s)	636, 802, 927, 930
FspBI	CTAG	2 cut(s)	509, 756
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	4 cut(s)	636, 802, 927, 930
GsuI	CTGGAG	2 cut(s)	390, 633
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	497
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	6 cut(s)	171, 202, 356, 539, 730, 792
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HindIII	AAGCTT	1 cut(s)	835
HinfI	GANTC	4 cut(s)	176, 187, 457, 500
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	1 cut(s)	606
Hpy166II	GTNNAC	3 cut(s)	237, 261, 576
Hpy188I	TCNGA	8 cut(s)	49, 186, 430, 481, 630, 826, 913, 1066
Hpy188III	TCNNGA	6 cut(s)	148, 407, 650, 902, 920, 1009
Hpy8I	GTNNAC	3 cut(s)	237, 261, 576
HpyAV	CCTTC	3 cut(s)	102, 824, 873
HpyCH4V	TGCA	3 cut(s)	663, 730, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 893, 994
HpyF3I	CTNAG	7 cut(s)	13, 126, 427, 699, 903, 990, 1063
Hsp92II	CATG	6 cut(s)	171, 202, 356, 539, 730, 792
HspAI	GCGC	1 cut(s)	463
KpnI	GGTACC	1 cut(s)	216
Kzo9I	GATC	5 cut(s)	335, 566, 722, 772, 913
LmnI	GCTCC	3 cut(s)	700, 827, 974
Lsp1109I	GCAGC	3 cut(s)	622, 813, 941
LweI	GCATC	2 cut(s)	303, 913
MaeI	CTAG	2 cut(s)	509, 756
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	5 cut(s)	337, 568, 724, 774, 915
MboI	GATC	5 cut(s)	335, 566, 722, 772, 913
MboII	GAAGA	5 cut(s)	468, 636, 773, 839, 947
MflI	RGATCY	2 cut(s)	722, 772
MhlI	GDGCHC	4 cut(s)	21, 287, 426, 824
MluCI	AATT	6 cut(s)	28, 53, 445, 559, 668, 765
MlyI	GAGTC	3 cut(s)	170, 196, 451
MnlI	CCTC	7 cut(s)	84, 384, 484, 835, 964, 999, 1072
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	5 cut(s)	344, 557, 584, 657, 768
MslI	CAYNNNNRTG	1 cut(s)	983
MspA1I	CMGCKG	2 cut(s)	125, 932
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	3 cut(s)	64, 497, 972
MvaI	CCWGG	2 cut(s)	64, 972
MwoI	GCNNNNNNNGC	3 cut(s)	291, 893, 994
NciI	CCSGG	1 cut(s)	497
NcoI	CCATGG	1 cut(s)	788
NdeII	GATC	5 cut(s)	335, 566, 722, 772, 913
NlaIII	CATG	6 cut(s)	171, 202, 356, 539, 730, 792
NlaIV	GGNNCC	5 cut(s)	214, 724, 774, 823, 976
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	1 cut(s)	500
PfoI	TCCNGGA	1 cut(s)	970
PkrI	GCNGC	4 cut(s)	637, 803, 928, 931
PleI	GAGTC	3 cut(s)	170, 195, 451
PpsI	GAGTC	3 cut(s)	170, 195, 451
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	62, 970
PspGI	CCWGG	2 cut(s)	62, 970
PspN4I	GGNNCC	5 cut(s)	214, 724, 774, 823, 976
PsrI	GAACNNNNNNTAC	2 cut(s)	882, 914
PstNI	CAGNNNCTG	2 cut(s)	902, 1070
PsuI	RGATCY	2 cut(s)	722, 772
PvuII	CAGCTG	2 cut(s)	125, 932
RsaI	GTAC	3 cut(s)	214, 238, 534
RsaNI	GTAC	3 cut(s)	213, 237, 533
RseI	CAYNNNNRTG	1 cut(s)	983
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	5 cut(s)	344, 557, 584, 657, 768
SatI	GCNGC	4 cut(s)	636, 802, 927, 930
Sau3AI	GATC	5 cut(s)	335, 566, 722, 772, 913
SchI	GAGTC	3 cut(s)	170, 196, 451
ScrFI	CCNGG	3 cut(s)	64, 497, 972
SduI	GDGCHC	4 cut(s)	21, 287, 426, 824
SfaNI	GCATC	2 cut(s)	303, 913
SfcI	CTRYAG	1 cut(s)	888
SfuI	TTCGAA	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	2 cut(s)	148, 466
SmoI	CTYRAG	2 cut(s)	148, 466
Sse9I	AATT	6 cut(s)	28, 53, 445, 559, 668, 765
SsiI	CCGC	3 cut(s)	89, 711, 926
SspMI	CTAG	2 cut(s)	509, 756
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	3 cut(s)	62, 495, 970
StyI	CCWWGG	1 cut(s)	788
TaqI	TCGA	3 cut(s)	287, 386, 840
TasI	AATT	6 cut(s)	28, 53, 445, 559, 668, 765
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	1 cut(s)	929
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	5 cut(s)	344, 557, 584, 657, 768
Tru9I	TTAA	5 cut(s)	344, 557, 584, 657, 768
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	635, 801, 929
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	855, 869
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	1 cut(s)	523
XapI	RAATTY	2 cut(s)	28, 445
XceI	RCATGY	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	2 cut(s)	509, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.