pycom14g04890

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013204
Physical Location & Seq
Reverse (-)
4643556 .. 4646411
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 759 bp
ATGGCGGAAGAAGATGATTACATGGGCGACCTCTCTCAGTTCCTCACTTCAGAAGTCACCAGCCCTCCAAAATCTTCATCCAAAAAGATTTTGAATACCAAAAACCCCAGTAATTTTCAACCCTCTAAGAAAAAATCTAAACTGTTAAACTGGCAAGAACAACGTAGAATCGATAGGGAGCGAAAGCAACAGGAAGAGGATGAGAAAACATTGGCTAAAATAGAGGCTGCCCCAATTCCACAATCCAACATTGGATTCAAACTTTTGAAACAAATGGGGTATACCCCGGGTTCCGCTCTTGGAAAGGAGGGCTCGGGCCAGGCTGAGCCGGTGAAGATTGATATTCGGCGCTCACGAGCTGGGATTGGGCGGGAAGACCCGCATAAGGAGAAGAGGAAGCGAGAGGAGATAAGGACTTGGGCGGAAAGGAGGACTGAGGAGGCTATGATGGAGGAGTTTGGGTATAGGCAGAAGTCACAGTGGCGGAGCAAGAGAGTTGTGGTTAATTTTAAGAAGGCACAGGCAGCGTTGGATCAATTGGAGAATAAGGAAGTTGTGCCTCCGGAGAAGAATGAGGACGGGGAAGAGGAGGGGGGAGAGGAGGAAGAGGAAGAGGAAGAAATTACAGAAGAGGATTTGCAAGAGATATTGATGAAACTGAGAGATGAACATAGATACTGCCTCTTTTGTGGATGCCAGTATGACTCAACGGAGGCACTGTTGTCGTACTGCCCTGGAACGGACGAAGACGACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

253

Amino Acids

29.22

Weight (kDa)

5.01

Isoelectric Point (pI)

77.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 68 - 125 3.7e-07 G-patch domain
G-patch PF01585 82 - 124 5.4e-15 G-patch domain
DUF4187 PF13821 200 - 252 1.9e-18 Domain of unknown function (DUF4187)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 562
AciI CCGC 6 cut(s) 5, 294, 370, 380, 422, 484
AclWI GGATC 1 cut(s) 540
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 728
AfiI CCNNNNNNNGG 2 cut(s) 385, 739
AgsI TTSAA 4 cut(s) 94, 119, 259, 268
AjnI CCWGG 2 cut(s) 318, 733
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 2 cut(s) 286, 313
Aor13HI TCCGGA 1 cut(s) 562
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 227, 524
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 2 cut(s) 287, 288
AsuHPI GGTGA 2 cut(s) 49, 343
AvaI CYCGRG 2 cut(s) 286, 313
BanII GRGCYC 1 cut(s) 314
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 381, 753
BbvI GCAGC 2 cut(s) 214, 536
BccI CCATC 1 cut(s) 442
BcgI CGANNNNNNTGC 2 cut(s) 705, 739
BciT130I CCWGG 2 cut(s) 320, 735
BcnI CCSGG 2 cut(s) 287, 288
BfoI RGCGCY 1 cut(s) 352
BisI GCNGC 2 cut(s) 228, 525
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 2 cut(s) 229, 526
Bme1390I CCNGG 4 cut(s) 287, 288, 320, 735
BmeT110I CYCGRG 2 cut(s) 286, 313
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 4 cut(s) 287, 288, 320, 735
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 683
BmuI ACTGGG 1 cut(s) 102
BpiI GAAGAC 2 cut(s) 381, 753
Bpu1102I GCTNAGC 1 cut(s) 324
BpuMI CCSGG 2 cut(s) 287, 288
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 285, 286, 733
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 6 cut(s) 49, 79, 446, 476, 704, 734
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 739
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 3 cut(s) 108, 155, 697
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 2 cut(s) 320, 735
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 285, 286, 733
BseGI GGATG 3 cut(s) 77, 205, 698
BseLI CCNNNNNNNGG 2 cut(s) 385, 739
BseMII CTCAG 4 cut(s) 50, 315, 426, 650
BseNI ACTGG 3 cut(s) 108, 155, 697
BseRI GAGGAG 5 cut(s) 419, 452, 467, 602, 614
BseXI GCAGC 2 cut(s) 214, 536
BseYI CCCAGC 1 cut(s) 359
BshFI GGCC 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 171
BsiHKCI CYCGRG 2 cut(s) 286, 313
BsiSI CCGG 3 cut(s) 287, 329, 563
BslI CCNNNNNNNGG 2 cut(s) 385, 739
BsnI GGCC 1 cut(s) 318
BsoBI CYCGRG 2 cut(s) 286, 313
Bsp1286I GDGCHC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 562
Bsp143I GATC 1 cut(s) 532
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 6 cut(s) 5, 294, 370, 380, 422, 484
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 4 cut(s) 49, 316, 427, 651
BspDI ATCGAT 1 cut(s) 171
BspEI TCCGGA 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 1 cut(s) 540
BsrBI CCGCTC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 3 cut(s) 108, 155, 697
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 285, 286, 733
BssMI GATC 1 cut(s) 532
BssNAI GTATAC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 354
Bst1107I GTATAC 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 320, 735
Bst4CI ACNGT 3 cut(s) 144, 480, 720
Bst6I CTCTTC 6 cut(s) 189, 386, 579, 600, 606, 624
BstDEI CTNAG 5 cut(s) 36, 126, 324, 435, 659
BstF5I GGATG 3 cut(s) 77, 205, 698
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 1 cut(s) 535
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNI CCWGG 2 cut(s) 320, 735
BstSCI CCNGG 4 cut(s) 285, 286, 318, 733
BstV1I GCAGC 2 cut(s) 214, 536
BstV2I GAAGAC 2 cut(s) 381, 753
BstZ17I GTATAC 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 1 cut(s) 318
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 3 cut(s) 77, 205, 698
BtsIMutI CAGTG 3 cut(s) 485, 716, 754
CfoI GCGC 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 316
Cfr9I CCCGGG 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 1 cut(s) 727
CviAII CATG 1 cut(s) 22
CviJI RGCY 9 cut(s) 63, 215, 227, 312, 318, 323, 328, 359, 443
CviKI_1 RGCY 9 cut(s) 63, 215, 227, 312, 318, 323, 328, 359, 443
CviQI GTAC 1 cut(s) 727
DdeI CTNAG 5 cut(s) 36, 126, 324, 435, 659
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
Eam1104I CTCTTC 6 cut(s) 189, 386, 579, 600, 606, 624
EarI CTCTTC 6 cut(s) 189, 386, 579, 600, 606, 624
EciI GGCGGA 3 cut(s) 20, 437, 499
Eco24I GRGCYC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 2 cut(s) 286, 313
EcoRII CCWGG 2 cut(s) 318, 733
EcoT38I GRGCYC 1 cut(s) 314
FaeI CATG 1 cut(s) 25
FaiI YATR 7 cut(s) 23, 282, 384, 446, 465, 672, 702
FatI CATG 1 cut(s) 21
FauI CCCGC 2 cut(s) 363, 387
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 228, 525
FokI GGATG 3 cut(s) 64, 212, 705
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 228, 525
GlaI GCGC 1 cut(s) 350
GluI GCNGC 2 cut(s) 228, 525
GsaI CCCAGC 1 cut(s) 363
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 1 cut(s) 318
HapII CCGG 3 cut(s) 287, 329, 563
HhaI GCGC 1 cut(s) 351
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 3 cut(s) 168, 255, 704
HpaII CCGG 3 cut(s) 287, 329, 563
HphI GGTGA 2 cut(s) 49, 343
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 354, 563
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 3 cut(s) 144, 480, 720
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 5 cut(s) 36, 126, 324, 435, 659
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 349
Kpn2I TCCGGA 1 cut(s) 562
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 2 cut(s) 178, 486
Lsp1109I GCAGC 2 cut(s) 214, 536
LweI GCATC 1 cut(s) 683
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 55, 474
MalI GATC 1 cut(s) 534
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 532
MfeI CAATTG 1 cut(s) 536
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 5 cut(s) 112, 234, 505, 536, 621
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 2 cut(s) 270, 510
MroI TCCGGA 1 cut(s) 562
MseI TTAA 3 cut(s) 146, 504, 510
MspI CCGG 3 cut(s) 287, 329, 563
MspR9I CCNGG 4 cut(s) 287, 288, 320, 735
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 2 cut(s) 320, 735
MwoI GCNNNNNNNGC 1 cut(s) 524
NciI CCSGG 2 cut(s) 287, 288
NdeII GATC 1 cut(s) 532
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 55, 474
PcsI WCGNNNNNNNCGW 1 cut(s) 352
PfeI GAWTC 2 cut(s) 168, 255
PkrI GCNGC 2 cut(s) 229, 526
PleI GAGTC 1 cut(s) 698
PpsI GAGTC 1 cut(s) 698
Psp6I CCWGG 2 cut(s) 318, 733
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 2 cut(s) 318, 733
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 316
RsaI GTAC 1 cut(s) 728
RsaNI GTAC 1 cut(s) 727
SaqAI TTAA 3 cut(s) 146, 504, 510
SatI GCNGC 2 cut(s) 228, 525
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 4 cut(s) 287, 288, 320, 735
SduI GDGCHC 1 cut(s) 314
SetI ASST 3 cut(s) 33, 166, 361
SfaNI GCATC 1 cut(s) 683
SmaI CCCGGG 1 cut(s) 288
Sse9I AATT 5 cut(s) 112, 234, 505, 536, 621
SsiI CCGC 6 cut(s) 5, 294, 370, 380, 422, 484
StyD4I CCNGG 4 cut(s) 285, 286, 318, 733
TaaI ACNGT 3 cut(s) 144, 480, 720
TaiI ACGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 171
TasI AATT 5 cut(s) 112, 234, 505, 536, 621
TfiI GAWTC 2 cut(s) 168, 255
Tru1I TTAA 3 cut(s) 146, 504, 510
Tru9I TTAA 3 cut(s) 146, 504, 510
TscAI CASTG 2 cut(s) 485, 723
TseFI GTSAC 2 cut(s) 55, 474
TseI GCWGC 2 cut(s) 227, 524
Tsp45I GTSAC 2 cut(s) 55, 474
TspDTI ATGAA 3 cut(s) 66, 668, 681
TspGWI ACGGA 2 cut(s) 725, 755
TspMI CCCGGG 1 cut(s) 286
TspRI CASTG 2 cut(s) 485, 723
XmaI CCCGGG 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.