Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009280

Physical Location & Seq

Genomic Coordinates Reverse (-)

8468720 .. 8471131

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCTTTACCTCCTTATTTCTTTTGTCTCTTTCATCCTCCTTTCCAAGTCTTTCACTCACCACAAGCCAATGTTACAGACATGGGAGGATAACATCAGATTAATCTCACTCAAGTTTTGGAGTGGATCTTCAAGTTTTCTCCAGAAAAACTGGATTTCACTCCAACCCATCACCTCCAAATTAAAAAAGATGGTGACTTCTGGTTCAAATGTGGAGGGGCAGAGAGAGGAGAGAGAAACTAGTCTCTCTCTCCTGGATTTGCCCGACTTGGCCTTGGGCTGCATTCTTGAGAAGCTTCCCCCATCTGGGTTGTGCTCCATGGCAGCAGTTTGTTCTTCTCTAAGGGAGAGCTGCAGAAGTGATCACTTGTGGGACAACCATATGAAGCACAAATGGGGTACACTTATTGGGCCTGCTGCTTACAGACAATGGCAACTGCATGTGGCCTCAAGAAATAGAATCAGACATTACTGTCTCAAGACCAAGAAAAAAGGTCTAATGGAGTCCCTTGCGGCTATCATTTTGCCTTCCACATGGACTACTCTGCCACAATCAGTAACTTGTGTGTGTAATTGTAAGGTGAAGGCTAGCAGTCGTAGTTTACCAGTCCATTCGATCATGTCTCTGTATCTCTCTCTCGAAAGTGGCAAGTTCTGGTTCCCGGCTCAGGTCTACAACCGCGAGCATGGTAATCTAGGGTTTCTGCTGTCTTGTTATGATGCACAACTGCGCTATGATTCGTGGACAAACACATTTCAAGCACGGTATTCACCTCATGGGCGGAGGGTAGTAGAGGAAAATATACCATGGGATAGATTAAGAGCGGCTCCAGTTGATACTCCTCCTTACAAACTTCATGTTTCTGATTGTTTACACGACTTAAAACCCGGTGATCATATTGAGATCCAGTGGAGAAGAAACAATGAATTTCCTTATGGTTGGTGGTATGGTGTCATTGGTCACTTAGAGTTGTGCAATGGGAATGTGAATCACTGCCGTTGTCACTACAATGATATAGTAGTGCTGGAGTTCCATCATTACACTCCTGGATCCCGGTGGAGACAAATGACGATAAACAGGAAGGACCATCGAGAAGAAGGCAATGAAGCAGACGGCTTCTATGGAGGAATCCGAAAGCTTTACAACGATGAGGAAATTGCAAGGTGGAAGCGTTTATGGCCGAGCCAAGTTCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

400

Amino Acids

46.39

Weight (kDa)

9.01

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	84 - 125	1.4e-07	F-box domain
F-box-like	PF12937	85 - 126	4.9e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41170 AT2G41170 AT2G41170
fragaria_vesca	FvH4_2g14090 FvH4_2g14090
malus_domestica	MD12G1096100.v1.1 MD14G1089800.v1.1
prunus_persica	Prupe.7G034300_v2.0.a1
pyrus_communis	pycom12g08510 pycom14g08060
rosa_chinensis	RchiOBHm_Chr6g0276171
rosa_laevigata	RLG00000013412
rosa_multiflora	Rmu_ssc0000201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192510
rosa_rugosa	Rorug06G0098600 Rorug06G0098700 Rorug06G0098800
rosa_samantha	Rh6AG210400 Rh6BG214600 Rh6CG217300 Rh6DG206900
rosa_wichuraiana	Rw6G018330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	471
AccB7I	CCANNNNNTGG	1 cut(s)	1192
AccBSI	CCGCTC	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	672
AccII	CGCG	1 cut(s)	681
AciI	CCGC	4 cut(s)	512, 679, 781, 824
AclWI	GGATC	4 cut(s)	133, 898, 1044, 1057
AcoI	YGGCCR	1 cut(s)	1178
AcsI	RAATTY	1 cut(s)	926
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	4 cut(s)	305, 306, 667, 1192
AgsI	TTSAA	3 cut(s)	132, 207, 758
AhlI	ACTAGT	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	252, 1045
AluBI	AGCT	3 cut(s)	295, 351, 1138
AluI	AGCT	3 cut(s)	295, 351, 1138
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	5 cut(s)	31, 248, 479, 627, 1054
AlwI	GGATC	4 cut(s)	133, 898, 1044, 1057
AoxI	GGCC	4 cut(s)	270, 410, 444, 1178
ApeKI	GCWGC	4 cut(s)	279, 323, 351, 416
ApoI	RAATTY	1 cut(s)	926
AseI	ATTAAT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	2 cut(s)	410, 1084
AsuC2I	CCSGG	3 cut(s)	662, 888, 1054
AsuHPI	GGTGA	6 cut(s)	50, 163, 205, 592, 762, 902
AsuNHI	GCTAGC	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	1084
BamHI	GGATCC	1 cut(s)	1049
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	4 cut(s)	266, 335, 338, 403
BccI	CCATC	5 cut(s)	176, 184, 310, 1041, 1095
BceAI	ACGGC	2 cut(s)	981, 1129
BciT130I	CCWGG	2 cut(s)	254, 1047
BclI	TGATCA	2 cut(s)	361, 892
BcnI	CCSGG	3 cut(s)	662, 888, 1054
BcoDI	GTCTC	5 cut(s)	31, 248, 479, 627, 1054
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	3 cut(s)	240, 588, 695
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
BlsI	GCNGC	6 cut(s)	281, 325, 353, 418, 514, 826
Bme1390I	CCNGG	5 cut(s)	254, 662, 888, 1047, 1054
Bme18I	GGWCC	1 cut(s)	1084
BmgT120I	GGNCC	2 cut(s)	410, 1084
BmiI	GGNNCC	3 cut(s)	659, 828, 1051
BmrFI	CCNGG	5 cut(s)	254, 662, 888, 1047, 1054
BmsI	GCATC	1 cut(s)	709
BmtI	GCTAGC	1 cut(s)	591
BpmI	CTGGAG	3 cut(s)	125, 813, 1046
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	4 cut(s)	95, 308, 433, 461
BpuMI	CCSGG	3 cut(s)	662, 888, 1054
BsaJI	CCNNGG	3 cut(s)	273, 318, 806
Bsc4I	CCNNNNNNNGG	4 cut(s)	305, 306, 667, 1192
Bse1I	ACTGG	4 cut(s)	155, 605, 830, 907
Bse3DI	GCAATG	2 cut(s)	982, 1108
BseBI	CCWGG	2 cut(s)	254, 1047
BseDI	CCNNGG	3 cut(s)	273, 318, 806
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	4 cut(s)	305, 306, 667, 1192
BseMI	GCAATG	2 cut(s)	982, 1108
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	4 cut(s)	155, 605, 830, 907
BseRI	GAGGAG	2 cut(s)	242, 831
BseXI	GCAGC	4 cut(s)	266, 335, 338, 403
Bsh1236I	CGCG	1 cut(s)	681
BshFI	GGCC	4 cut(s)	272, 412, 446, 1180
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	662, 888, 1054
BslFI	GGGAC	2 cut(s)	386, 490
BslI	CCNNNNNNNGG	4 cut(s)	305, 306, 667, 1192
BsmAI	GTCTC	5 cut(s)	31, 248, 479, 627, 1054
BsmFI	GGGAC	2 cut(s)	386, 490
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	272, 412, 446, 1180
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
Bsp19I	CCATGG	2 cut(s)	318, 806
BspACI	CCGC	4 cut(s)	512, 679, 781, 824
BspANI	GGCC	4 cut(s)	272, 412, 446, 1180
BspCNI	CTCAG	1 cut(s)	679
BspFNI	CGCG	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	659, 828, 1051
BspMAI	CTGCAG	1 cut(s)	356
BspOI	GCTAGC	1 cut(s)	591
BspPI	GGATC	4 cut(s)	133, 898, 1044, 1057
BsrBI	CCGCTC	1 cut(s)	824
BsrDI	GCAATG	2 cut(s)	982, 1108
BsrI	ACTGG	4 cut(s)	155, 605, 830, 907
BssECI	CCNNGG	3 cut(s)	273, 318, 806
BssMI	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
BssT1I	CCWWGG	3 cut(s)	273, 318, 806
Bst2UI	CCWGG	2 cut(s)	254, 1047
Bst4CI	ACNGT	2 cut(s)	473, 765
BstC8I	GCNNGC	3 cut(s)	414, 589, 683
BstDEI	CTNAG	3 cut(s)	341, 666, 964
BstDSI	CCRYGG	2 cut(s)	318, 806
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	6 cut(s)	128, 364, 618, 895, 906, 1052
BstMAI	GTCTC	5 cut(s)	31, 248, 479, 627, 1054
BstMBI	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
BstMWI	GCNNNNNNNGC	1 cut(s)	1177
BstNI	CCWGG	2 cut(s)	254, 1047
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	5 cut(s)	252, 660, 886, 1045, 1052
BstSFI	CTRYAG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	4 cut(s)	266, 335, 338, 403
BstX2I	RGATCY	3 cut(s)	125, 903, 1049
BstYI	RGATCY	3 cut(s)	125, 903, 1049
BsuRI	GGCC	4 cut(s)	272, 412, 446, 1180
BtgI	CCRYGG	2 cut(s)	318, 806
BtsCI	GGATG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	991
BtsIMutI	CAGTG	2 cut(s)	914, 991
Cac8I	GCNNGC	3 cut(s)	414, 589, 683
CfoI	GCGC	1 cut(s)	732
Cfr13I	GGNCC	2 cut(s)	410, 1084
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	9 cut(s)	81, 319, 440, 534, 619, 686, 776, 807, 857
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	3 cut(s)	341, 666, 964
DpnI	GATC	6 cut(s)	127, 363, 617, 894, 905, 1051
DpnII	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
DrdI	GACNNNNNNGTC	1 cut(s)	471
DseDI	GACNNNNNNGTC	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	1178
EciI	GGCGGA	1 cut(s)	796
Eco130I	CCWWGG	3 cut(s)	273, 318, 806
Eco47I	GGWCC	1 cut(s)	1084
EcoRII	CCWGG	2 cut(s)	252, 1045
EcoT14I	CCWWGG	3 cut(s)	273, 318, 806
ErhI	CCWWGG	3 cut(s)	273, 318, 806
FaeI	CATG	9 cut(s)	84, 322, 443, 537, 622, 689, 779, 810, 860
FaqI	GGGAC	2 cut(s)	386, 490
FatI	CATG	9 cut(s)	80, 318, 439, 533, 618, 685, 775, 806, 856
FauNDI	CATATG	1 cut(s)	381
FbaI	TGATCA	2 cut(s)	361, 892
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
FspBI	CTAG	3 cut(s)	240, 588, 695
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
GsuI	CTGGAG	3 cut(s)	125, 813, 1046
HaeIII	GGCC	4 cut(s)	272, 412, 446, 1180
HapII	CCGG	3 cut(s)	662, 888, 1054
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	9 cut(s)	84, 322, 443, 537, 622, 689, 779, 810, 860
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HindIII	AAGCTT	2 cut(s)	293, 1136
HinfI	GANTC	5 cut(s)	459, 503, 737, 988, 1128
HpaII	CCGG	3 cut(s)	662, 888, 1054
HphI	GGTGA	6 cut(s)	50, 163, 205, 592, 762, 902
Hpy166II	GTNNAC	5 cut(s)	401, 602, 673, 744, 872
Hpy188I	TCNGA	4 cut(s)	98, 464, 865, 1133
Hpy188III	TCNNGA	7 cut(s)	142, 287, 450, 478, 638, 1091, 1193
Hpy8I	GTNNAC	5 cut(s)	401, 602, 673, 744, 872
HpyAV	CCTTC	4 cut(s)	537, 577, 1075, 1091
HpyCH4III	ACNGT	2 cut(s)	473, 765
HpyCH4V	TGCA	6 cut(s)	282, 354, 439, 722, 975, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1177
HpyF3I	CTNAG	3 cut(s)	341, 666, 964
Hsp92II	CATG	9 cut(s)	84, 322, 443, 537, 622, 689, 779, 810, 860
HspAI	GCGC	1 cut(s)	730
Ksp22I	TGATCA	2 cut(s)	361, 892
Kzo9I	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
LmnI	GCTCC	2 cut(s)	320, 832
Lsp1109I	GCAGC	4 cut(s)	266, 335, 338, 403
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	3 cut(s)	240, 588, 695
MaeIII	GTNAC	5 cut(s)	72, 193, 556, 959, 1001
MalI	GATC	6 cut(s)	127, 363, 617, 894, 905, 1051
MbiI	CCGCTC	1 cut(s)	824
MboI	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
MboII	GAAGA	4 cut(s)	120, 327, 927, 1106
MflI	RGATCY	3 cut(s)	125, 903, 1049
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	4 cut(s)	179, 571, 926, 1155
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	187
MseI	TTAA	4 cut(s)	101, 182, 818, 881
MslI	CAYNNNNRTG	1 cut(s)	1008
MspI	CCGG	3 cut(s)	662, 888, 1054
MspR9I	CCNGG	5 cut(s)	254, 662, 888, 1047, 1054
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	254, 1047
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	1 cut(s)	1177
NciI	CCSGG	3 cut(s)	662, 888, 1054
NcoI	CCATGG	2 cut(s)	318, 806
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	9 cut(s)	84, 322, 443, 537, 622, 689, 779, 810, 860
NlaIV	GGNNCC	3 cut(s)	659, 828, 1051
NmuCI	GTSAC	3 cut(s)	193, 959, 1001
NspI	RCATGY	1 cut(s)	443
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	4 cut(s)	459, 737, 988, 1128
PflMI	CCANNNNNTGG	1 cut(s)	1192
PfoI	TCCNGGA	2 cut(s)	252, 1045
PkrI	GCNGC	6 cut(s)	281, 325, 353, 418, 514, 826
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	252, 1045
PspGI	CCWGG	2 cut(s)	252, 1045
PspN4I	GGNNCC	3 cut(s)	659, 828, 1051
PspPI	GGNCC	2 cut(s)	410, 1084
PstI	CTGCAG	1 cut(s)	356
PsuI	RGATCY	3 cut(s)	125, 903, 1049
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	1008
SaqAI	TTAA	4 cut(s)	101, 182, 818, 881
SatI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
Sau3AI	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
Sau96I	GGNCC	2 cut(s)	410, 1084
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	5 cut(s)	254, 662, 888, 1047, 1054
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	1 cut(s)	709
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	1084
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	4 cut(s)	110, 287, 448, 476
SmoI	CTYRAG	4 cut(s)	110, 287, 448, 476
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	4 cut(s)	179, 571, 926, 1155
SsiI	CCGC	4 cut(s)	512, 679, 781, 824
SspMI	CTAG	3 cut(s)	240, 588, 695
StyD4I	CCNGG	5 cut(s)	252, 660, 886, 1045, 1052
StyI	CCWWGG	3 cut(s)	273, 318, 806
TaaI	ACNGT	2 cut(s)	473, 765
TaqI	TCGA	3 cut(s)	614, 639, 1090
TasI	AATT	4 cut(s)	179, 571, 926, 1155
TauI	GCSGC	2 cut(s)	515, 827
TfiI	GAWTC	4 cut(s)	459, 737, 988, 1128
Tru1I	TTAA	4 cut(s)	101, 182, 818, 881
Tru9I	TTAA	4 cut(s)	101, 182, 818, 881
TscAI	CASTG	2 cut(s)	914, 998
TseFI	GTSAC	3 cut(s)	193, 959, 1001
TseI	GCWGC	4 cut(s)	279, 323, 351, 416
Tsp45I	GTSAC	3 cut(s)	193, 959, 1001
TspDTI	ATGAA	5 cut(s)	22, 398, 845, 939, 1119
TspRI	CASTG	2 cut(s)	914, 998
Van91I	CCANNNNNTGG	1 cut(s)	1192
VpaK11BI	GGWCC	1 cut(s)	1084
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	1 cut(s)	926
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	3 cut(s)	240, 588, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.