Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010662

Physical Location & Seq

Genomic Coordinates Reverse (-)

10258957 .. 10263824

Gene Structure 4868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCACAGAATAAACCCAAGAGACTCTACCAAGTTTGGAAAGGAAGCAATAACTTTTTCTGTGGCGGGAGGTTAATTTTTGGTCCTGATGTGGCATCTCTTCTTCTGTCTACACTCCTTATTGCCGGCCCAGCAGTTGCCTTCTGCTTGAAGGTTTATCTTAAAATCAAAGATGAGAAGAACAAGAATGAGAGTCTATGGCTTCCTGTATTAGTTATTGGCTCAGTTCTTACAATATTGGATTTAACCTTTCTCTTCTTGACTTCTGGTAGAGATCCTGGAATAATCCCTCGAAATTCAAGGCCTCCAGAATCAGATGAAGCATTTGATCTAGCTACCCCATCCATGGAGTGGGTTAATGAAAGAACTCCTCATTTGAAGCTACCTCGAACAAGAGATGTGATTGTAAATGGTCACACAGTAAAAGTGAAGTATTGCGATACTTGTTTGCTTTATCGTCCTCCCCGTGTATCTCACTGTTCTATCTGCAACAATTGCATTCAGAGATTCGATCATCACTGTCCATGGGTTGGTCAGTGCATTGGAATTCGTAACTATCCGTTCTTCTTCATGTTCATATCAACCTCAACCATACTGTGCATATATGTTTTTGTCTTCTCTTGGATAAACATAGTTCAACATGGCAGTCTTCCGAAAGCTTTTGCCAATGATATCCTTTCAGATATCCTTTTAGCATACTGTTTTATCGCTATCTGGTTTGTTGGTGGCCTTACAATCTTCCATTCCTACTTGATATGCACAAACCAGACAACATATGAAAACTTCCGGTACCGATATGATAAGAAGGAGAACCCGTATAACAAAGGAATGATTTGGAACATCAAAGAAGTTTTTTTCTCCAAAATCCCTCCTTCAATGAATAGATTCGATCATTCATTGAGATGGATGAACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

306

Amino Acids

35.33

Weight (kDa)

9.18

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	143 - 263	6.7e-35	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56930 AT3G56930
fragaria_vesca	FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica	MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica	Prupe.7G022600_v2.0.a1
pyrus_communis	pycom12g09230 pycom14g08900
rosa_chinensis	RchiOBHm_Chr3g0493221
rosa_laevigata	RLG00000022721
rosa_multiflora	Rmu_sc0003406.1_g000006
rosa_roxburghii	Rroxscaffold_6G00391740
rosa_rugosa	Rorug03G0259900
rosa_samantha	Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana	Rw3G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	789
AccB7I	CCANNNNNTGG	2 cut(s)	351, 530
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	295, 546
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	3 cut(s)	346, 351, 530
AgsI	TTSAA	5 cut(s)	151, 300, 379, 638, 876
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	335, 382, 659
AluI	AGCT	3 cut(s)	335, 382, 659
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	3 cut(s)	127, 302, 727
ApoI	RAATTY	2 cut(s)	295, 546
Asp700I	GAANNNNTTC	1 cut(s)	884
Asp718I	GGTACC	1 cut(s)	789
AspS9I	GGNCC	2 cut(s)	83, 128
AvaII	GGWCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	789
BbsI	GAAGAC	2 cut(s)	607, 641
BccI	CCATC	2 cut(s)	349, 897
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	83, 128
BmiI	GGNNCC	1 cut(s)	791
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	104
BpiI	GAAGAC	2 cut(s)	607, 641
BpmI	CTGGAG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	345, 524
BsaWI	WCCGGW	1 cut(s)	786
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 351, 530
Bse118I	RCCGGY	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	345, 524
BseGI	GGATG	2 cut(s)	341, 912
BseLI	CCNNNNNNNGG	3 cut(s)	346, 351, 530
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	360
BseYI	CCCAGC	1 cut(s)	130
BshFI	GGCC	3 cut(s)	129, 304, 729
BshNI	GGYRCC	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	126, 787
BslI	CCNNNNNNNGG	3 cut(s)	346, 351, 530
BsmAI	GTCTC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	3 cut(s)	129, 304, 729
Bsp143I	GATC	4 cut(s)	274, 328, 511, 889
Bsp19I	CCATGG	2 cut(s)	345, 524
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	3 cut(s)	129, 304, 729
BspCNI	CTCAG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	791
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	345, 524
BssMI	GATC	4 cut(s)	274, 328, 511, 889
BssT1I	CCWWGG	2 cut(s)	345, 524
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	5 cut(s)	421, 479, 521, 597, 701
Bst6I	CTCTTC	2 cut(s)	105, 260
BstAPI	GCANNNNNTGC	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	223
BstDSI	CCRYGG	2 cut(s)	345, 524
BstF5I	GGATG	2 cut(s)	341, 912
BstKTI	GATC	4 cut(s)	277, 331, 514, 892
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	4 cut(s)	274, 328, 511, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 495
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstV2I	GAAGAC	2 cut(s)	607, 641
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	129, 304, 729
BtgI	CCRYGG	2 cut(s)	345, 524
BtsCI	GGATG	2 cut(s)	341, 912
BtsIMutI	CAGTG	3 cut(s)	475, 517, 542
Cac8I	GCNNGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	83, 128
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	4 cut(s)	346, 525, 571, 641
CviJI	RGCY	8 cut(s)	129, 202, 222, 304, 335, 382, 659, 729
CviKI_1	RGCY	8 cut(s)	129, 202, 222, 304, 335, 382, 659, 729
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	4 cut(s)	276, 330, 513, 891
DpnII	GATC	4 cut(s)	274, 328, 511, 889
Eam1104I	CTCTTC	2 cut(s)	105, 260
EarI	CTCTTC	2 cut(s)	105, 260
Eco130I	CCWWGG	2 cut(s)	345, 524
Eco147I	AGGCCT	1 cut(s)	304
Eco32I	GATATC	2 cut(s)	673, 685
Eco47I	GGWCC	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	2 cut(s)	673, 685
EcoT14I	CCWWGG	2 cut(s)	345, 524
ErhI	CCWWGG	2 cut(s)	345, 524
FaeI	CATG	4 cut(s)	349, 528, 574, 644
FatI	CATG	4 cut(s)	345, 524, 570, 640
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	110
FokI	GGATG	1 cut(s)	328
FspBI	CTAG	1 cut(s)	332
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	129, 304, 729
HapII	CCGG	2 cut(s)	126, 787
Hin1II	CATG	4 cut(s)	349, 528, 574, 644
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	5 cut(s)	24, 193, 311, 507, 885
HpaII	CCGG	2 cut(s)	126, 787
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	4 cut(s)	316, 504, 654, 682
Hpy188III	TCNNGA	3 cut(s)	86, 259, 308
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	4 cut(s)	145, 151, 799, 882
HpyCH4III	ACNGT	5 cut(s)	421, 479, 521, 597, 701
HpyCH4V	TGCA	5 cut(s)	489, 498, 540, 600, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 495
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	4 cut(s)	349, 528, 574, 644
KpnI	GGTACC	1 cut(s)	793
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	274, 328, 511, 889
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	2 cut(s)	413, 551
MalI	GATC	4 cut(s)	276, 330, 513, 891
MboI	GATC	4 cut(s)	274, 328, 511, 889
MboII	GAAGA	9 cut(s)	92, 95, 190, 247, 556, 559, 607, 641, 730
MfeI	CAATTG	1 cut(s)	493
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	4 cut(s)	75, 295, 493, 546
MlyI	GAGTC	2 cut(s)	18, 202
MnlI	CCTC	8 cut(s)	63, 300, 315, 381, 396, 471, 595, 879
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	4 cut(s)	74, 162, 245, 357
MslI	CAYNNNNRTG	1 cut(s)	901
MspI	CCGG	2 cut(s)	126, 787
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	493
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	131, 495
NaeI	GCCGGC	1 cut(s)	127
NcoI	CCATGG	2 cut(s)	345, 524
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	4 cut(s)	274, 328, 511, 889
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	4 cut(s)	349, 528, 574, 644
NlaIV	GGNNCC	1 cut(s)	791
NmuCI	GTSAC	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PctI	GAATGC	1 cut(s)	498
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	3 cut(s)	311, 507, 885
PflMI	CCANNNNNTGG	2 cut(s)	351, 530
PfoI	TCCNGGA	1 cut(s)	277
PleI	GAGTC	2 cut(s)	18, 201
PpsI	GAGTC	2 cut(s)	18, 201
Psp6I	CCWGG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	791
PspPI	GGNCC	2 cut(s)	83, 128
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	901
SaqAI	TTAA	4 cut(s)	74, 162, 245, 357
Sau3AI	GATC	4 cut(s)	274, 328, 511, 889
Sau96I	GGNCC	2 cut(s)	83, 128
SchI	GAGTC	2 cut(s)	18, 202
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	8 cut(s)	74, 156, 251, 337, 384, 388, 587, 661
SfaNI	GCATC	1 cut(s)	104
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	901
Sse9I	AATT	4 cut(s)	75, 295, 493, 546
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	345, 524
TaaI	ACNGT	5 cut(s)	421, 479, 521, 597, 701
TaqI	TCGA	4 cut(s)	292, 388, 510, 888
TasI	AATT	4 cut(s)	75, 295, 493, 546
TfiI	GAWTC	3 cut(s)	311, 507, 885
Tru1I	TTAA	4 cut(s)	74, 162, 245, 357
Tru9I	TTAA	4 cut(s)	74, 162, 245, 357
TscAI	CASTG	3 cut(s)	482, 524, 542
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	7 cut(s)	333, 375, 559, 565, 792, 885, 893
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	3 cut(s)	482, 524, 542
Van91I	CCANNNNNTGG	2 cut(s)	351, 530
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	2 cut(s)	295, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.