Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000971

Physical Location & Seq

Genomic Coordinates Reverse (-)

10443469 .. 10447014

Gene Structure 3546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCTGAAAAGCACATTGGACAGAATTGTGAGGAGTCATCGTAATGTTACTTCTAGTTGCAGTATCAGTAGTATCAGTAGCATCGGCGGAGTTCCCAAAGAGAAGGTAGATTGCGTGGTAATAGGGGCGGGTGTGGTGGGATTGGCGTTGGCGAGAGAGCTTGCTCTAAAGGGCAGAGAGGTGTTGGTGTTAGATTCAGCTCCCACCTTCGGCACTTCCACCAGCTCCCGCAACAGCGAGGTCATCCATGCCGGCATCTACTACCCAACCCATTCCCTCAAGGCAAAGTTTTGTGTTAGGGGAAGAGATTTGCTGTACAAGTATTGCTCTCAACACAATATTCCTCATAAACAAATTGGTAAACTCATAGTTGCAACTAGGTCTTCCGAGATTCCCAAGTTGCATAATCTAATGCATCGCGGGATTCAAAATGGAGTTGATGGTTTGGTAATGATGGAGGGTTCAGAAGCCATGAGAATGGAACCTGAATTGGTATGTTTGAAAGCCTTACTATCACCGCTTTCTGGGATTGTGGATACACATTCGCTCATGCTATCTTTGGTGGGAGAAGCTGAAAATCATGGCACAACCTTCTCCTATAATACTACTGTTATTGGTGGCCATATTCAACAAAATCATCTATGCCTTCATGTTTCTGAAACCAAAACCCTTGAAAATTGGAATGGAAAGTTTCCGTTGCAACCAGAGATGATACTTATTCCTAAACTCGTTGTGAACTCTGCCGGCTTAAGTGCCCCTGCCCTTGCAAAGCGATTTGATGGCCTCCGAACTGAACATATTCCTCCTTCCCATTTGGCTCGTGGATGCTACTTCACTTTATCAAATACTACAATCTGTCCGTTCAGACACTTGATTTATCCTATACCAGAGGATGGTGGCCTTGGTGTGCATGTTACCCTGGATTTAAATGGTCAGGTCAAGTTTGGCCCTGATGTAGAATGGATTGATGGTGTTGATGATGTTTCAAGCTTCCTGAATAAGTTTGACTATTCTGTATTTATGAATCGCAAAGAGCTATTTTACCCAGAGATAAGGAAGTACTACCCAAATCTAAAGGATGGGTCTCTTGAGCCAGGCTATGCAGGGATTCGACCGAAGCTTTCAGGTCCTCGACAGTCTCCAGTTGATTTTCAGATACAGGGGCAGGATGTTCATGGGATAACCGGTCTCATCAACCTTTTTGGAATAGAGTCGCCCGGTTTAACTTCAAGCATGGGAATTGCAGAGCACGTAGCAACAAGATTCTTCAGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016899 GO:0036094 GO:0043167 GO:0043168 GO:0047545 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

426

Amino Acids

46.58

Weight (kDa)

8.34

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	37 - 420	5.1e-55	FAD dependent oxidoreductase
NAD_binding_8	PF13450	40 - 79	7.8e-07	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56840
fragaria_vesca	FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380
malus_domestica	MD14G1091600.v1.1 MD14G1100100.v1.1
prunus_persica	Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1
pyrus_communis	pycom14g09020
rosa_chinensis	RchiOBHm_Chr3g0495031
rosa_laevigata	RLG00000022654
rosa_multiflora	Rmu_ssc0000058.1_g000010
rosa_roxburghii	Rroxscaffold_6G00390830
rosa_rugosa	Rorug03G0269400
rosa_samantha	Rh3AG318400 Rh3BG353500 Rh3CG350400 Rh3DG352800
rosa_wichuraiana	Rw0G014470 Rw0G015070 Rw3G027760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	893
AccII	CGCG	1 cut(s)	420
AciI	CCGC	5 cut(s)	87, 128, 229, 420, 518
AcoI	YGGCCR	1 cut(s)	619
AcuI	CTGAAG	1 cut(s)	1252
AfaI	GTAC	2 cut(s)	317, 1061
AfiI	CCNNNNNNNGG	3 cut(s)	209, 524, 893
AflII	CTTAAG	1 cut(s)	748
AgeI	ACCGGT	1 cut(s)	1184
AgsI	TTSAA	6 cut(s)	428, 502, 629, 674, 987, 1230
AjnI	CCWGG	2 cut(s)	918, 1093
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	7 cut(s)	160, 200, 225, 572, 990, 1036, 1120
AluI	AGCT	7 cut(s)	160, 200, 225, 572, 990, 1036, 1120
Alw21I	GWGCWC	1 cut(s)	1251
Alw26I	GTCTC	3 cut(s)	1089, 1143, 1193
AoxI	GGCC	4 cut(s)	619, 781, 898, 946
AsiGI	ACCGGT	1 cut(s)	1184
Asp700I	GAANNNNTTC	1 cut(s)	798
AspS9I	GGNCC	2 cut(s)	947, 1127
AsuC2I	CCSGG	1 cut(s)	1218
AsuHPI	GGTGA	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	1127
BaeGI	GKGCMC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	621
BarI	GAAGNNNNNNTAC	2 cut(s)	34, 66
BauI	CACGAG	1 cut(s)	819
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	1251
BccI	CCATC	6 cut(s)	434, 448, 773, 887, 962, 1073
BciT130I	CCWGG	2 cut(s)	920, 1095
BciVI	GTATCC	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	1218
BcoDI	GTCTC	3 cut(s)	1089, 1143, 1193
BfaI	CTAG	2 cut(s)	54, 378
BfrI	CTTAAG	1 cut(s)	748
BfuI	GTATCC	1 cut(s)	529
BmcAI	AGTACT	1 cut(s)	1061
Bme1390I	CCNGG	3 cut(s)	920, 1095, 1218
Bme18I	GGWCC	1 cut(s)	1127
BmgT120I	GGNCC	2 cut(s)	947, 1127
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	3 cut(s)	920, 1095, 1218
BmsI	GCATC	4 cut(s)	90, 264, 424, 815
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	1125
BpuEI	CTTGAG	2 cut(s)	263, 1109
BpuMI	CCSGG	1 cut(s)	1218
BsaAI	YACGTR	1 cut(s)	1252
BsaI	GGTCTC	2 cut(s)	1089, 1193
BsaJI	CCNNGG	2 cut(s)	901, 918
BsaWI	WCCGGW	1 cut(s)	1184
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 524, 893
Bse118I	RCCGGY	3 cut(s)	251, 743, 1184
Bse1I	ACTGG	1 cut(s)	1142
BseBI	CCWGG	2 cut(s)	920, 1095
BseDI	CCNNGG	2 cut(s)	901, 918
BseGI	GGATG	5 cut(s)	243, 830, 898, 1084, 1174
BseLI	CCNNNNNNNGG	3 cut(s)	209, 524, 893
BseNI	ACTGG	1 cut(s)	1142
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	757
Bsh1236I	CGCG	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	1115
BshFI	GGCC	4 cut(s)	621, 783, 900, 948
BshTI	ACCGGT	1 cut(s)	1184
BsiEI	CGRYCG	1 cut(s)	1115
BsiHKAI	GWGCWC	1 cut(s)	1251
BsiSI	CCGG	4 cut(s)	252, 744, 1185, 1218
BslI	CCNNNNNNNGG	3 cut(s)	209, 524, 893
BsmAI	GTCTC	3 cut(s)	1089, 1143, 1193
BsnI	GGCC	4 cut(s)	621, 783, 900, 948
Bso31I	GGTCTC	2 cut(s)	1089, 1193
Bsp1286I	GDGCHC	2 cut(s)	757, 1251
Bsp1407I	TGTACA	1 cut(s)	315
BspACI	CCGC	5 cut(s)	87, 128, 229, 420, 518
BspANI	GGCC	4 cut(s)	621, 783, 900, 948
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	483
BspTI	CTTAAG	1 cut(s)	748
BspTNI	GGTCTC	2 cut(s)	1089, 1193
BsrFI	RCCGGY	3 cut(s)	251, 743, 1184
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	1142
BssAI	RCCGGY	3 cut(s)	251, 743, 1184
BssECI	CCNNGG	2 cut(s)	901, 918
BssSI	CACGAG	1 cut(s)	819
BssT1I	CCWWGG	1 cut(s)	901
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	2 cut(s)	920, 1095
Bst4CI	ACNGT	2 cut(s)	610, 1137
Bst6I	CTCTTC	1 cut(s)	298
BstAFI	CTTAAG	1 cut(s)	748
BstAUI	TGTACA	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	1252
BstC8I	GCNNGC	3 cut(s)	162, 253, 745
BstF5I	GGATG	5 cut(s)	243, 830, 898, 1084, 1174
BstFNI	CGCG	1 cut(s)	420
BstMAI	GTCTC	3 cut(s)	1089, 1143, 1193
BstMCI	CGRYCG	1 cut(s)	1115
BstNI	CCWGG	2 cut(s)	920, 1095
BstNSI	RCATGY	1 cut(s)	914
BstSCI	CCNGG	3 cut(s)	918, 1093, 1216
BstSLI	GKGCMC	1 cut(s)	757
BstUI	CGCG	1 cut(s)	420
BstV2I	GAAGAC	1 cut(s)	375
BstXI	CCANNNNNNTGG	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	621, 783, 900, 948
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	5 cut(s)	243, 830, 898, 1084, 1174
Cac8I	GCNNGC	3 cut(s)	162, 253, 745
Cfr10I	RCCGGY	3 cut(s)	251, 743, 1184
Cfr13I	GGNCC	2 cut(s)	947, 1127
Csp6I	GTAC	2 cut(s)	316, 1060
CspAI	ACCGGT	1 cut(s)	1184
CviAII	CATG	8 cut(s)	248, 472, 550, 581, 650, 911, 1175, 1234
CviQI	GTAC	2 cut(s)	316, 1060
DraI	TTTAAA	1 cut(s)	927
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	901
Eco31I	GGTCTC	2 cut(s)	1089, 1193
Eco47I	GGWCC	1 cut(s)	1127
Eco57I	CTGAAG	1 cut(s)	1252
EcoO109I	RGGNCCY	1 cut(s)	1127
EcoRII	CCWGG	2 cut(s)	918, 1093
EcoT14I	CCWWGG	1 cut(s)	901
EcoT22I	ATGCAT	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	901
FaeI	CATG	8 cut(s)	251, 475, 553, 584, 653, 914, 1178, 1237
FatI	CATG	8 cut(s)	247, 471, 549, 580, 649, 910, 1174, 1233
FauI	CCCGC	3 cut(s)	121, 236, 413
FokI	GGATG	5 cut(s)	230, 837, 905, 1091, 1181
FspBI	CTAG	2 cut(s)	54, 378
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	4 cut(s)	621, 783, 900, 948
HapII	CCGG	4 cut(s)	252, 744, 1185, 1218
Hin1II	CATG	8 cut(s)	251, 475, 553, 584, 653, 914, 1178, 1237
HindIII	AAGCTT	2 cut(s)	988, 1118
HinfI	GANTC	8 cut(s)	34, 194, 391, 424, 1024, 1108, 1211, 1263
HpaII	CCGG	4 cut(s)	252, 744, 1185, 1218
HphI	GGTGA	1 cut(s)	507
Hpy166II	GTNNAC	2 cut(s)	362, 736
Hpy188I	TCNGA	6 cut(s)	388, 466, 658, 788, 866, 1155
Hpy188III	TCNNGA	2 cut(s)	994, 1088
Hpy8I	GTNNAC	2 cut(s)	362, 736
HpyAV	CCTTC	5 cut(s)	97, 217, 601, 656, 816
HpyCH4III	ACNGT	2 cut(s)	610, 1137
HpyCH4IV	ACGT	1 cut(s)	1251
HpyCH4V	TGCA	9 cut(s)	60, 374, 403, 415, 700, 767, 910, 1103, 1244
HpySE526I	ACGT	1 cut(s)	1251
Hsp92II	CATG	8 cut(s)	251, 475, 553, 584, 653, 914, 1178, 1237
KroI	GCCGGC	2 cut(s)	251, 743
KroNI	GCCGGC	2 cut(s)	253, 745
LmnI	GCTCC	2 cut(s)	205, 230
LweI	GCATC	4 cut(s)	90, 264, 424, 815
MaeI	CTAG	2 cut(s)	54, 378
MaeII	ACGT	1 cut(s)	1251
MaeIII	GTNAC	2 cut(s)	46, 913
MboII	GAAGA	3 cut(s)	315, 375, 1258
MhlI	GDGCHC	2 cut(s)	757, 1251
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	5 cut(s)	24, 354, 488, 676, 1239
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	2 cut(s)	43, 1220
Mox20I	TGGCCA	1 cut(s)	621
Mph1103I	ATGCAT	1 cut(s)	417
MroNI	GCCGGC	2 cut(s)	251, 743
MroXI	GAANNNNTTC	1 cut(s)	798
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	3 cut(s)	749, 926, 1223
MslI	CAYNNNNRTG	2 cut(s)	42, 476
Msp20I	TGGCCA	1 cut(s)	621
MspCI	CTTAAG	1 cut(s)	748
MspI	CCGG	4 cut(s)	252, 744, 1185, 1218
MspR9I	CCNGG	3 cut(s)	920, 1095, 1218
MvaI	CCWGG	2 cut(s)	920, 1095
MvnI	CGCG	1 cut(s)	420
NaeI	GCCGGC	2 cut(s)	253, 745
NciI	CCSGG	1 cut(s)	1218
NgoMIV	GCCGGC	2 cut(s)	251, 743
NlaIII	CATG	8 cut(s)	251, 475, 553, 584, 653, 914, 1178, 1237
NlaIV	GGNNCC	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	417
NspI	RCATGY	1 cut(s)	914
PdiI	GCCGGC	2 cut(s)	253, 745
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	6 cut(s)	194, 391, 424, 1024, 1108, 1263
PflMI	CCANNNNNTGG	1 cut(s)	893
PinAI	ACCGGT	1 cut(s)	1184
PleI	GAGTC	2 cut(s)	42, 1219
PpsI	GAGTC	2 cut(s)	42, 1219
Ppu21I	YACGTR	1 cut(s)	1252
PpuMI	RGGWCCY	1 cut(s)	1127
Psp5II	RGGWCCY	1 cut(s)	1127
Psp6I	CCWGG	2 cut(s)	918, 1093
PspGI	CCWGG	2 cut(s)	918, 1093
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	947, 1127
PspPPI	RGGWCCY	1 cut(s)	1127
RsaI	GTAC	2 cut(s)	317, 1061
RsaNI	GTAC	2 cut(s)	316, 1060
RseI	CAYNNNNRTG	2 cut(s)	42, 476
SaqAI	TTAA	3 cut(s)	749, 926, 1223
Sau96I	GGNCC	2 cut(s)	947, 1127
ScaI	AGTACT	1 cut(s)	1061
SchI	GAGTC	2 cut(s)	43, 1220
ScrFI	CCNGG	3 cut(s)	920, 1095, 1218
SduI	GDGCHC	2 cut(s)	757, 1251
SfaNI	GCATC	4 cut(s)	90, 264, 424, 815
SinI	GGWCC	1 cut(s)	1127
SmiI	ATTTAAAT	1 cut(s)	927
SmiMI	CAYNNNNRTG	2 cut(s)	42, 476
SmlI	CTYRAG	3 cut(s)	278, 748, 1088
SmoI	CTYRAG	3 cut(s)	278, 748, 1088
Sse9I	AATT	5 cut(s)	24, 354, 488, 676, 1239
SsiI	CCGC	5 cut(s)	87, 128, 229, 420, 518
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	54, 378
StyD4I	CCNGG	3 cut(s)	918, 1093, 1216
StyI	CCWWGG	1 cut(s)	901
SwaI	ATTTAAAT	1 cut(s)	927
TaaI	ACNGT	2 cut(s)	610, 1137
TaiI	ACGT	1 cut(s)	1254
TaqI	TCGA	2 cut(s)	1111, 1132
TaqII	GACCGA	1 cut(s)	1129
TasI	AATT	5 cut(s)	24, 354, 488, 676, 1239
TatI	WGTACW	2 cut(s)	315, 1059
TfiI	GAWTC	6 cut(s)	194, 391, 424, 1024, 1108, 1263
Tru1I	TTAA	3 cut(s)	749, 926, 1223
Tru9I	TTAA	3 cut(s)	749, 926, 1223
TspDTI	ATGAA	3 cut(s)	638, 1037, 1163
TspGWI	ACGGA	2 cut(s)	684, 849
Van91I	CCANNNNNTGG	1 cut(s)	893
Vha464I	CTTAAG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	1127
XceI	RCATGY	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	2 cut(s)	54, 378
ZrmI	AGTACT	1 cut(s)	1061
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.