E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53090 AT3G53090 |
| fragaria_vesca | FvH4_6g17370 |
| malus_domestica | MD12G1101300.v1.1 MD14G1095600.v1.1 |
| prunus_persica | Prupe.7G121800_v2.0.a1 |
| pyrus_communis | pycom14g09370 |
| rosa_chinensis | RchiOBHm_Chr3g0471541 |
| rosa_laevigata | RLG00000024156 RLG00000024169 |
| rosa_multiflora | Rmu_sc0011843.1_g000001 Rmu_sc0039862.1_g000001 Rmu_ssc0000445.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00409820 |
| rosa_rugosa | Rorug03G0118300 Rorug03G0118400 |
| rosa_samantha | Rh3AG168500 Rh3BG194000 Rh3CG184500 Rh3DG181200 |
| rosa_wichuraiana | Rw3G015880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2103, 2342 |
| AarI | CACCTGC | 4 cut(s) | 2010, 2239, 3086, 3318 |
| Acc36I | ACCTGC | 4 cut(s) | 2010, 2239, 3086, 3318 |
| AccB1I | GGYRCC | 3 cut(s) | 104, 2044, 2196 |
| AccI | GTMKAC | 2 cut(s) | 2137, 3170 |
| AccII | CGCG | 1 cut(s) | 230 |
| AccIII | TCCGGA | 1 cut(s) | 2581 |
| AciI | CCGC | 3 cut(s) | 332, 399, 2245 |
| AclI | AACGTT | 1 cut(s) | 3247 |
| AclWI | GGATC | 6 cut(s) | 792, 802, 1101, 1320, 2870, 2883 |
| AcuI | CTGAAG | 3 cut(s) | 150, 2979, 3443 |
| AfaI | GTAC | 6 cut(s) | 272, 853, 944, 1391, 1852, 2826 |
| AflII | CTTAAG | 1 cut(s) | 2993 |
| AflIII | ACRYGT | 5 cut(s) | 576, 1959, 2356, 2709, 2815 |
| AgeI | ACCGGT | 1 cut(s) | 2199 |
| AjiI | CACGTC | 1 cut(s) | 579 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2952, 2984 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 246, 278, 464, 496 |
| Alw21I | GWGCWC | 3 cut(s) | 264, 413, 3289 |
| Alw26I | GTCTC | 7 cut(s) | 219, 250, 752, 1243, 1364, 1950, 3453 |
| AlwI | GGATC | 6 cut(s) | 792, 802, 1101, 1320, 2870, 2883 |
| Ama87I | CYCGRG | 3 cut(s) | 77, 236, 3282 |
| Aor13HI | TCCGGA | 1 cut(s) | 2581 |
| AoxI | GGCC | 9 cut(s) | 52, 282, 872, 904, 1406, 1800, 1936, 2575, 2590 |
| ApeKI | GCWGC | 9 cut(s) | 232, 290, 293, 344, 701, 1169, 2264, 2642, 3313 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2285, 2317 |
| AsiGI | ACCGGT | 1 cut(s) | 2199 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1567 |
| AspLEI | GCGC | 3 cut(s) | 209, 232, 324 |
| AspS9I | GGNCC | 9 cut(s) | 53, 282, 382, 905, 1377, 1694, 1800, 1937, 2447 |
| AsuC2I | CCSGG | 1 cut(s) | 56 |
| AsuHPI | GGTGA | 9 cut(s) | 104, 604, 749, 1023, 1379, 1475, 2447, 3060, 3110 |
| AvaI | CYCGRG | 3 cut(s) | 77, 236, 3282 |
| AvaII | GGWCC | 4 cut(s) | 382, 1377, 1694, 2447 |
| BamHI | GGATCC | 1 cut(s) | 2875 |
| BanI | GGYRCC | 3 cut(s) | 104, 2044, 2196 |
| BanII | GRGCYC | 4 cut(s) | 264, 1147, 1583, 3289 |
| BauI | CACGAG | 1 cut(s) | 2274 |
| BbsI | GAAGAC | 1 cut(s) | 425 |
| Bbv12I | GWGCWC | 3 cut(s) | 264, 413, 3289 |
| BbvI | GCAGC | 9 cut(s) | 219, 277, 280, 331, 713, 1181, 2251, 2654, 3325 |
| BceAI | ACGGC | 4 cut(s) | 119, 303, 2466, 2993 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1575, 1609 |
| BciVI | GTATCC | 2 cut(s) | 113, 2747 |
| BclI | TGATCA | 2 cut(s) | 13, 1557 |
| BcnI | CCSGG | 1 cut(s) | 56 |
| BcoDI | GTCTC | 7 cut(s) | 219, 250, 752, 1243, 1364, 1950, 3453 |
| BfaI | CTAG | 9 cut(s) | 620, 884, 1275, 1529, 1881, 2235, 2421, 2726, 2798 |
| BfmI | CTRYAG | 4 cut(s) | 325, 1584, 2259, 3311 |
| BfoI | RGCGCY | 2 cut(s) | 210, 325 |
| BfrI | CTTAAG | 1 cut(s) | 2993 |
| BfuAI | ACCTGC | 4 cut(s) | 2010, 2239, 3086, 3318 |
| BfuI | GTATCC | 2 cut(s) | 113, 2747 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 281 |
| BglII | AGATCT | 2 cut(s) | 1435, 1883 |
| BlpI | GCTNAGC | 1 cut(s) | 675 |
| BmcAI | AGTACT | 1 cut(s) | 944 |
| Bme18I | GGWCC | 4 cut(s) | 382, 1377, 1694, 2447 |
| BmeT110I | CYCGRG | 3 cut(s) | 77, 236, 3282 |
| BmgBI | CACGTC | 1 cut(s) | 579 |
| BmgT120I | GGNCC | 9 cut(s) | 53, 282, 382, 905, 1377, 1694, 1800, 1937, 2447 |
| BmiI | GGNNCC | 8 cut(s) | 22, 106, 1378, 2046, 2198, 2723, 2877, 3194 |
| BmrI | ACTGGG | 1 cut(s) | 1127 |
| BmsI | GCATC | 5 cut(s) | 688, 1315, 2087, 2153, 2299 |
| BmuI | ACTGGG | 1 cut(s) | 1127 |
| BpiI | GAAGAC | 1 cut(s) | 425 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 230, 262 |
| BpmI | CTGGAG | 3 cut(s) | 538, 1221, 2078 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1875 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 675 |
| BpuEI | CTTGAG | 6 cut(s) | 33, 1301, 1597, 1658, 1926, 1936 |
| BpuMI | CCSGG | 1 cut(s) | 56 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1092 |
| BsaI | GGTCTC | 2 cut(s) | 250, 752 |
| BsaWI | WCCGGW | 4 cut(s) | 384, 2199, 2314, 2581 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 246, 276, 2335, 2365 |
| Bse118I | RCCGGY | 1 cut(s) | 2199 |
| Bse1I | ACTGG | 9 cut(s) | 444, 689, 1133, 1696, 1828, 2061, 2877, 3178, 3273 |
| Bse3DI | GCAATG | 1 cut(s) | 630 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1092 |
| BseAI | TCCGGA | 1 cut(s) | 2581 |
| BseGI | GGATG | 7 cut(s) | 66, 141, 665, 925, 3016, 3071, 3385 |
| BseJI | GATNNNNATC | 1 cut(s) | 1092 |
| BseMI | GCAATG | 1 cut(s) | 630 |
| BseMII | CTCAG | 9 cut(s) | 263, 558, 666, 680, 883, 927, 1470, 2301, 3177 |
| BseNI | ACTGG | 9 cut(s) | 444, 689, 1133, 1696, 1828, 2061, 2877, 3178, 3273 |
| BseRI | GAGGAG | 2 cut(s) | 63, 213 |
| BseXI | GCAGC | 9 cut(s) | 219, 277, 280, 331, 713, 1181, 2251, 2654, 3325 |
| BseYI | CCCAGC | 1 cut(s) | 1416 |
| BsgI | GTGCAG | 1 cut(s) | 714 |
| Bsh1236I | CGCG | 1 cut(s) | 230 |
| BshFI | GGCC | 9 cut(s) | 54, 284, 874, 906, 1408, 1802, 1938, 2577, 2592 |
| BshNI | GGYRCC | 3 cut(s) | 104, 2044, 2196 |
| BshTI | ACCGGT | 1 cut(s) | 2199 |
| BsiHKAI | GWGCWC | 3 cut(s) | 264, 413, 3289 |
| BsiHKCI | CYCGRG | 3 cut(s) | 77, 236, 3282 |
| BsiSI | CCGG | 6 cut(s) | 56, 385, 2200, 2315, 2582, 3196 |
| BslFI | GGGAC | 2 cut(s) | 565, 1189 |
| BsmAI | GTCTC | 7 cut(s) | 219, 250, 752, 1243, 1364, 1950, 3453 |
| BsmBI | CGTCTC | 2 cut(s) | 219, 1364 |
| BsmFI | GGGAC | 2 cut(s) | 565, 1189 |
| BsmI | GAATGC | 1 cut(s) | 390 |
| BsnI | GGCC | 9 cut(s) | 54, 284, 874, 906, 1408, 1802, 1938, 2577, 2592 |
| Bso31I | GGTCTC | 2 cut(s) | 250, 752 |
| BsoBI | CYCGRG | 3 cut(s) | 77, 236, 3282 |
| Bsp1286I | GDGCHC | 5 cut(s) | 264, 413, 1147, 1583, 3289 |
| Bsp13I | TCCGGA | 1 cut(s) | 2581 |
| Bsp1407I | TGTACA | 1 cut(s) | 2824 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 675 |
| BspACI | CCGC | 3 cut(s) | 332, 399, 2245 |
| BspANI | GGCC | 9 cut(s) | 54, 284, 874, 906, 1408, 1802, 1938, 2577, 2592 |
| BspCNI | CTCAG | 9 cut(s) | 262, 559, 667, 681, 882, 928, 1471, 2300, 3178 |
| BspEI | TCCGGA | 1 cut(s) | 2581 |
| BspFNI | CGCG | 1 cut(s) | 230 |
| BspHI | TCATGA | 2 cut(s) | 1213, 1891 |
| BspLI | GGNNCC | 8 cut(s) | 22, 106, 1378, 2046, 2198, 2723, 2877, 3194 |
| BspMAI | CTGCAG | 2 cut(s) | 1588, 3315 |
| BspMI | ACCTGC | 4 cut(s) | 2010, 2239, 3086, 3318 |
| BspPI | GGATC | 6 cut(s) | 792, 802, 1101, 1320, 2870, 2883 |
| BspQI | GCTCTTC | 1 cut(s) | 659 |
| BspT107I | GGYRCC | 3 cut(s) | 104, 2044, 2196 |
| BspTI | CTTAAG | 1 cut(s) | 2993 |
| BspTNI | GGTCTC | 2 cut(s) | 250, 752 |
| BsrDI | GCAATG | 1 cut(s) | 630 |
| BsrFI | RCCGGY | 1 cut(s) | 2199 |
| BsrGI | TGTACA | 1 cut(s) | 2824 |
| BsrI | ACTGG | 9 cut(s) | 444, 689, 1133, 1696, 1828, 2061, 2877, 3178, 3273 |
| BssAI | RCCGGY | 1 cut(s) | 2199 |
| BssNAI | GTATAC | 1 cut(s) | 3171 |
| BssSI | CACGAG | 1 cut(s) | 2274 |
| BssT1I | CCWWGG | 4 cut(s) | 115, 210, 1656, 2755 |
| Bst1107I | GTATAC | 1 cut(s) | 3171 |
| Bst2BI | CACGAG | 1 cut(s) | 2274 |
| Bst4CI | ACNGT | 5 cut(s) | 1295, 1354, 1807, 2865, 2953 |
| Bst6I | CTCTTC | 5 cut(s) | 305, 357, 505, 659, 2755 |
| BstAFI | CTTAAG | 1 cut(s) | 2993 |
| BstAUI | TGTACA | 1 cut(s) | 2824 |
| BstC8I | GCNNGC | 7 cut(s) | 205, 1840, 1990, 2168, 2195, 2226, 2590 |
| BstDSI | CCRYGG | 2 cut(s) | 285, 2482 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 91, 2582 |
| BstF5I | GGATG | 7 cut(s) | 66, 141, 665, 925, 3016, 3071, 3385 |
| BstFNI | CGCG | 1 cut(s) | 230 |
| BstH2I | RGCGCY | 2 cut(s) | 210, 325 |
| BstHHI | GCGC | 3 cut(s) | 209, 232, 324 |
| BstMAI | GTCTC | 7 cut(s) | 219, 250, 752, 1243, 1364, 1950, 3453 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 281, 290, 341, 685, 701, 2264, 2318 |
| BstNSI | RCATGY | 6 cut(s) | 556, 1615, 1963, 2360, 2819, 3345 |
| BstSFI | CTRYAG | 4 cut(s) | 325, 1584, 2259, 3311 |
| BstUI | CGCG | 1 cut(s) | 230 |
| BstV1I | GCAGC | 9 cut(s) | 219, 277, 280, 331, 713, 1181, 2251, 2654, 3325 |
| BstV2I | GAAGAC | 1 cut(s) | 425 |
| BstX2I | RGATCY | 5 cut(s) | 794, 1312, 1435, 1883, 2875 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1140, 1500 |
| BstYI | RGATCY | 5 cut(s) | 794, 1312, 1435, 1883, 2875 |
| BstZ17I | GTATAC | 1 cut(s) | 3171 |
| BsuI | GTATCC | 2 cut(s) | 113, 2747 |
| BsuRI | GGCC | 9 cut(s) | 54, 284, 874, 906, 1408, 1802, 1938, 2577, 2592 |
| BtgI | CCRYGG | 2 cut(s) | 285, 2482 |
| BtrI | CACGTC | 1 cut(s) | 579 |
| BtsCI | GGATG | 7 cut(s) | 66, 141, 665, 925, 3016, 3071, 3385 |
| BtsI | GCAGTG | 2 cut(s) | 711, 1427 |
| BtsIMutI | CAGTG | 7 cut(s) | 711, 1427, 1689, 1803, 2054, 2572, 2870 |
| BveI | ACCTGC | 4 cut(s) | 2010, 2239, 3086, 3318 |
| Cac8I | GCNNGC | 7 cut(s) | 205, 1840, 1990, 2168, 2195, 2226, 2590 |
| CciI | TCATGA | 2 cut(s) | 1213, 1891 |
| CfoI | GCGC | 3 cut(s) | 209, 232, 324 |
| Cfr10I | RCCGGY | 1 cut(s) | 2199 |
| Cfr13I | GGNCC | 9 cut(s) | 53, 282, 382, 905, 1377, 1694, 1800, 1937, 2447 |
| CseI | GACGC | 1 cut(s) | 236 |
| CsiI | ACCWGGT | 1 cut(s) | 2449 |
| Csp6I | GTAC | 6 cut(s) | 271, 852, 943, 1390, 1851, 2825 |
| CspAI | ACCGGT | 1 cut(s) | 2199 |
| CviQI | GTAC | 6 cut(s) | 271, 852, 943, 1390, 1851, 2825 |
| Eam1104I | CTCTTC | 5 cut(s) | 305, 357, 505, 659, 2755 |
| EarI | CTCTTC | 5 cut(s) | 305, 357, 505, 659, 2755 |
| Ecl136II | GAGCTC | 2 cut(s) | 262, 3287 |
| Eco130I | CCWWGG | 4 cut(s) | 115, 210, 1656, 2755 |
| Eco147I | AGGCCT | 1 cut(s) | 1408 |
| Eco24I | GRGCYC | 4 cut(s) | 264, 1147, 1583, 3289 |
| Eco31I | GGTCTC | 2 cut(s) | 250, 752 |
| Eco32I | GATATC | 1 cut(s) | 3349 |
| Eco47I | GGWCC | 4 cut(s) | 382, 1377, 1694, 2447 |
| Eco53kI | GAGCTC | 2 cut(s) | 262, 3287 |
| Eco57I | CTGAAG | 3 cut(s) | 150, 2979, 3443 |
| Eco88I | CYCGRG | 3 cut(s) | 77, 236, 3282 |
| EcoICRI | GAGCTC | 2 cut(s) | 262, 3287 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 91, 2582 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1377 |
| EcoRI | GAATTC | 3 cut(s) | 26, 451, 2750 |
| EcoRV | GATATC | 1 cut(s) | 3349 |
| EcoT14I | CCWWGG | 4 cut(s) | 115, 210, 1656, 2755 |
| EcoT38I | GRGCYC | 4 cut(s) | 264, 1147, 1583, 3289 |
| ErhI | CCWWGG | 4 cut(s) | 115, 210, 1656, 2755 |
| Esp3I | CGTCTC | 2 cut(s) | 219, 1364 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 410, 442 |
| FaqI | GGGAC | 2 cut(s) | 565, 1189 |
| FauNDI | CATATG | 1 cut(s) | 1234 |
| FbaI | TGATCA | 2 cut(s) | 13, 1557 |
| FblI | GTMKAC | 2 cut(s) | 2137, 3170 |
| FokI | GGATG | 7 cut(s) | 53, 128, 672, 932, 3023, 3058, 3392 |
| FriOI | GRGCYC | 4 cut(s) | 264, 1147, 1583, 3289 |
| FspBI | CTAG | 9 cut(s) | 620, 884, 1275, 1529, 1881, 2235, 2421, 2726, 2798 |
| GlaI | GCGC | 3 cut(s) | 208, 231, 323 |
| GsaI | CCCAGC | 1 cut(s) | 1420 |
| GsuI | CTGGAG | 3 cut(s) | 538, 1221, 2078 |
| HaeII | RGCGCY | 2 cut(s) | 210, 325 |
| HaeIII | GGCC | 9 cut(s) | 54, 284, 874, 906, 1408, 1802, 1938, 2577, 2592 |
| HapII | CCGG | 6 cut(s) | 56, 385, 2200, 2315, 2582, 3196 |
| HgaI | GACGC | 1 cut(s) | 236 |
| HhaI | GCGC | 3 cut(s) | 209, 232, 324 |
| Hin6I | GCGC | 3 cut(s) | 207, 230, 322 |
| HinP1I | GCGC | 3 cut(s) | 207, 230, 322 |
| HincII | GTYRAC | 4 cut(s) | 1249, 1291, 1871, 2868 |
| HindII | GTYRAC | 4 cut(s) | 1249, 1291, 1871, 2868 |
| HindIII | AAGCTT | 1 cut(s) | 3425 |
| HpaI | GTTAAC | 1 cut(s) | 1249 |
| HpaII | CCGG | 6 cut(s) | 56, 385, 2200, 2315, 2582, 3196 |
| HphI | GGTGA | 9 cut(s) | 104, 604, 749, 1023, 1379, 1475, 2447, 3060, 3110 |
| Hpy166II | GTNNAC | 8 cut(s) | 382, 1249, 1291, 1871, 2138, 2456, 2868, 3171 |
| Hpy8I | GTNNAC | 8 cut(s) | 382, 1249, 1291, 1871, 2138, 2456, 2868, 3171 |
| Hpy99I | CGWCG | 1 cut(s) | 282 |
| HpyAV | CCTTC | 6 cut(s) | 235, 703, 995, 2588, 2780, 3221 |
| HpyCH4III | ACNGT | 5 cut(s) | 1295, 1354, 1807, 2865, 2953 |
| HpyCH4IV | ACGT | 8 cut(s) | 375, 578, 779, 1908, 2709, 3141, 3247, 3442 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 281, 290, 341, 685, 701, 2264, 2318 |
| HpySE526I | ACGT | 8 cut(s) | 375, 578, 779, 1908, 2709, 3141, 3247, 3442 |
| HspAI | GCGC | 3 cut(s) | 207, 230, 322 |
| Kpn2I | TCCGGA | 1 cut(s) | 2581 |
| Ksp22I | TGATCA | 2 cut(s) | 13, 1557 |
| KspAI | GTTAAC | 1 cut(s) | 1249 |
| LguI | GCTCTTC | 1 cut(s) | 659 |
| LmnI | GCTCC | 8 cut(s) | 20, 200, 267, 387, 2059, 2317, 3192, 3292 |
| Lsp1109I | GCAGC | 9 cut(s) | 219, 277, 280, 331, 713, 1181, 2251, 2654, 3325 |
| LweI | GCATC | 5 cut(s) | 688, 1315, 2087, 2153, 2299 |
| MabI | ACCWGGT | 1 cut(s) | 2449 |
| MaeI | CTAG | 9 cut(s) | 620, 884, 1275, 1529, 1881, 2235, 2421, 2726, 2798 |
| MaeII | ACGT | 8 cut(s) | 375, 578, 779, 1908, 2709, 3141, 3247, 3442 |
| MaeIII | GTNAC | 9 cut(s) | 136, 572, 1685, 1830, 2953, 3013, 3179, 3268, 3291 |
| MfeI | CAATTG | 1 cut(s) | 489 |
| MflI | RGATCY | 5 cut(s) | 794, 1312, 1435, 1883, 2875 |
| MhlI | GDGCHC | 5 cut(s) | 264, 413, 1147, 1583, 3289 |
| MlyI | GAGTC | 1 cut(s) | 522 |
| MmeI | TCCRAC | 4 cut(s) | 330, 762, 1500, 3455 |
| MroI | TCCGGA | 1 cut(s) | 2581 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1567 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2916 |
| MspA1I | CMGCKG | 1 cut(s) | 992 |
| MspCI | CTTAAG | 1 cut(s) | 2993 |
| MspI | CCGG | 6 cut(s) | 56, 385, 2200, 2315, 2582, 3196 |
| MunI | CAATTG | 1 cut(s) | 489 |
| Mva1269I | GAATGC | 1 cut(s) | 390 |
| MvnI | CGCG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 281, 290, 341, 685, 701, 2264, 2318 |
| NciI | CCSGG | 1 cut(s) | 56 |
| NdeI | CATATG | 1 cut(s) | 1234 |
| NlaIV | GGNNCC | 8 cut(s) | 22, 106, 1378, 2046, 2198, 2723, 2877, 3194 |
| NmuCI | GTSAC | 4 cut(s) | 136, 572, 1685, 1830 |
| NspI | RCATGY | 6 cut(s) | 556, 1615, 1963, 2360, 2819, 3345 |
| PaeR7I | CTCGAG | 2 cut(s) | 236, 3282 |
| PagI | TCATGA | 2 cut(s) | 1213, 1891 |
| PaqCI | CACCTGC | 4 cut(s) | 2010, 2239, 3086, 3318 |
| PasI | CCCWGGG | 2 cut(s) | 1676, 2524 |
| PceI | AGGCCT | 1 cut(s) | 1408 |
| PciI | ACATGT | 3 cut(s) | 1959, 2356, 2815 |
| PciSI | GCTCTTC | 1 cut(s) | 659 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 234, 262 |
| PctI | GAATGC | 1 cut(s) | 390 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1567 |
| PflFI | GACNNNGTC | 2 cut(s) | 1295, 1375 |
| PinAI | ACCGGT | 1 cut(s) | 2199 |
| PleI | GAGTC | 1 cut(s) | 521 |
| PpsI | GAGTC | 1 cut(s) | 521 |
| PpuMI | RGGWCCY | 1 cut(s) | 1377 |
| PscI | ACATGT | 3 cut(s) | 1959, 2356, 2815 |
| PsiI | TTATAA | 2 cut(s) | 2103, 2342 |
| Psp124BI | GAGCTC | 2 cut(s) | 264, 3289 |
| Psp1406I | AACGTT | 1 cut(s) | 3247 |
| Psp5II | RGGWCCY | 1 cut(s) | 1377 |
| PspFI | CCCAGC | 1 cut(s) | 1416 |
| PspN4I | GGNNCC | 8 cut(s) | 22, 106, 1378, 2046, 2198, 2723, 2877, 3194 |
| PspPI | GGNCC | 9 cut(s) | 53, 282, 382, 905, 1377, 1694, 1800, 1937, 2447 |
| PspPPI | RGGWCCY | 1 cut(s) | 1377 |
| PstI | CTGCAG | 2 cut(s) | 1588, 3315 |
| PsuI | RGATCY | 5 cut(s) | 794, 1312, 1435, 1883, 2875 |
| PsyI | GACNNNGTC | 2 cut(s) | 1295, 1375 |
| PvuII | CAGCTG | 1 cut(s) | 992 |
| RsaI | GTAC | 6 cut(s) | 272, 853, 944, 1391, 1852, 2826 |
| RsaNI | GTAC | 6 cut(s) | 271, 852, 943, 1390, 1851, 2825 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2916 |
| SacI | GAGCTC | 2 cut(s) | 264, 3289 |
| SapI | GCTCTTC | 1 cut(s) | 659 |
| Sau96I | GGNCC | 9 cut(s) | 53, 282, 382, 905, 1377, 1694, 1800, 1937, 2447 |
| ScaI | AGTACT | 1 cut(s) | 944 |
| SchI | GAGTC | 1 cut(s) | 522 |
| SduI | GDGCHC | 5 cut(s) | 264, 413, 1147, 1583, 3289 |
| SexAI | ACCWGGT | 1 cut(s) | 2449 |
| SfaNI | GCATC | 5 cut(s) | 688, 1315, 2087, 2153, 2299 |
| SfcI | CTRYAG | 4 cut(s) | 325, 1584, 2259, 3311 |
| Sfr274I | CTCGAG | 2 cut(s) | 236, 3282 |
| SinI | GGWCC | 4 cut(s) | 382, 1377, 1694, 2447 |
| SlaI | CTCGAG | 2 cut(s) | 236, 3282 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2916 |
| SmlI | CTYRAG | 9 cut(s) | 48, 236, 1280, 1576, 1637, 1941, 1951, 2993, 3282 |
| SmoI | CTYRAG | 9 cut(s) | 48, 236, 1280, 1576, 1637, 1941, 1951, 2993, 3282 |
| SseBI | AGGCCT | 1 cut(s) | 1408 |
| SsiI | CCGC | 3 cut(s) | 332, 399, 2245 |
| SspI | AATATT | 2 cut(s) | 1071, 1566 |
| SspMI | CTAG | 9 cut(s) | 620, 884, 1275, 1529, 1881, 2235, 2421, 2726, 2798 |
| SstI | GAGCTC | 2 cut(s) | 264, 3289 |
| StuI | AGGCCT | 1 cut(s) | 1408 |
| StyI | CCWWGG | 4 cut(s) | 115, 210, 1656, 2755 |
| TaaI | ACNGT | 5 cut(s) | 1295, 1354, 1807, 2865, 2953 |
| TaiI | ACGT | 8 cut(s) | 378, 581, 782, 1911, 2712, 3144, 3250, 3445 |
| TaqI | TCGA | 5 cut(s) | 237, 358, 721, 3283, 3404 |
| TatI | WGTACW | 4 cut(s) | 851, 942, 1389, 2824 |
| TauI | GCSGC | 1 cut(s) | 335 |
| TscAI | CASTG | 7 cut(s) | 711, 1427, 1696, 1810, 2061, 2572, 2877 |
| TseFI | GTSAC | 4 cut(s) | 136, 572, 1685, 1830 |
| TseI | GCWGC | 9 cut(s) | 232, 290, 293, 344, 701, 1169, 2264, 2642, 3313 |
| Tsp45I | GTSAC | 4 cut(s) | 136, 572, 1685, 1830 |
| TspGWI | ACGGA | 6 cut(s) | 33, 254, 817, 2083, 2706, 3279 |
| TspRI | CASTG | 7 cut(s) | 711, 1427, 1696, 1810, 2061, 2572, 2877 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1295, 1375 |
| Vha464I | CTTAAG | 1 cut(s) | 2993 |
| VpaK11BI | GGWCC | 4 cut(s) | 382, 1377, 1694, 2447 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 91, 2582 |
| XbaI | TCTAGA | 1 cut(s) | 2420 |
| XceI | RCATGY | 6 cut(s) | 556, 1615, 1963, 2360, 2819, 3345 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1325 |
| XhoI | CTCGAG | 2 cut(s) | 236, 3282 |
| XmiI | GTMKAC | 2 cut(s) | 2137, 3170 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1567 |
| XspI | CTAG | 9 cut(s) | 620, 884, 1275, 1529, 1881, 2235, 2421, 2726, 2798 |
| ZrmI | AGTACT | 1 cut(s) | 944 |