pycom14g10040

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013886
Physical Location & Seq
Forward (+)
12421397 .. 12424627
3231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1092 bp
ATGCGCATCATTTGGCTTGATCGAATCTCGGATGGAAAGAGGGGGAAGAATCCTACTCGTCTTCCATCCAATATATCAACTCAATCAGCCGTGCAGCGGCGCAGTCAACTGTTGGACAAAATTCCCCAAAGAGAAAACGCCCCAAAACAAAGCACCGCCATGGGCAGGAGAGGAGGAGGAGGAGCTCAGAGGGCGCCAAACACCGCATTCGCGTCTACCAATAACATATCACTGAGAGAAGAATTGACCGGGAAAAAGCAGACCAAGGGCGGCTCCTCCATCAATGCCAAGGCCGCGCTGAAGCTCGAGCACTTGCAGAGACTCGCTGTGTGGACTGGCGCGGAGGCTTCTGTTCCTTCTCTGGGTGCATTCTTTGGGCGCACCTTGGCCGTTGCCCAAGAGGCCATCGGTGTGCCCCCTGAACCTTCTCTCTTCCCTTGCCAGAGATGTGAAACAGTTCTTCAGCCTGGCTTCAACTGCATTGTTCGAATTGAGAAAAATAGAGCAAAGGTACGACAACGAAGTAAGAAGATTACTAATTTCTCTCAAAACAATGTAGTGTATACATGCCACTTCTGTTCACACCGGAATGTGAAGAGAGGGACTCCGAATGGACATATGAAAATGATATGCCCCCCTAAGGCCAAAACCACTTCGAATCTGAAACTTAAGTCCATCTCCAAGAAGTTTATCAACTTAAAGGAGATCACAGCAGGTGATGAGGTTAGTAAAGCAGAGGAGATAGCTACTTCCGCAGGCAGAGAGATTCCTGCAGTCAACACTCCTGCCGGCGAAGGCGAGGTTAGTAAAGCGAATGAAATAGCTCCTTCAGCAGGCATAGAGATTCCTAGCGTGGATACTCCTGCAACTCCAACGGTGAAGACTGGAATTGCTTTGTTGTTGGGAGGGAAGAAGAGAAGGAGAAACAATTCGGCGACCAAGAAACCAGGTGAACCTGATAGCAGTCCCACCTCAATAGCTGAAAACACAACTAGCACTTCAAACAAACGGAGGAGAAAATCATGGACCAGTTTGAAGGAGATTGCTATACGCAGTGATCACAATAACATCCGAAAAATCAGTTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

364

Amino Acids

39.41

Weight (kDa)

10.53

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 102 - 194 2.2e-11 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 704
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 193
AccI GTMKAC 2 cut(s) 215, 563
AccII CGCG 3 cut(s) 212, 296, 341
AciI CCGC 7 cut(s) 97, 156, 204, 270, 294, 341, 753
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 3 cut(s) 320, 446, 813
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 1 cut(s) 513
AfiI CCNNNNNNNGG 5 cut(s) 96, 165, 362, 640, 833
AflII CTTAAG 1 cut(s) 668
AgsI TTSAA 3 cut(s) 475, 1002, 1036
AjnI CCWGG 2 cut(s) 466, 946
AluBI AGCT 5 cut(s) 185, 304, 746, 824, 980
AluI AGCT 5 cut(s) 185, 304, 746, 824, 980
Alw21I GWGCWC 2 cut(s) 187, 312
Alw26I GTCTC 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 4 cut(s) 291, 387, 402, 642
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 120
Asp700I GAANNNNTTC 2 cut(s) 456, 928
AspLEI GCGC 6 cut(s) 6, 102, 196, 298, 341, 381
AspS9I GGNCC 1 cut(s) 1026
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 728, 889, 962
AsuII TTCGAA 2 cut(s) 487, 656
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 1026
AxyI CCTNAGG 1 cut(s) 639
BaeGI GKGCMC 1 cut(s) 417
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 53, 887
Bbv12I GWGCWC 2 cut(s) 187, 312
BbvI GCAGC 1 cut(s) 106
BccI CCATC 5 cut(s) 26, 73, 287, 413, 683
BceAI ACGGC 2 cut(s) 74, 374
BciT130I CCWGG 2 cut(s) 468, 948
BciVI GTATCC 1 cut(s) 850
BclI TGATCA 1 cut(s) 1057
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 2 cut(s) 849, 993
BfmI CTRYAG 1 cut(s) 771
BfoI RGCGCY 1 cut(s) 197
BfrI CTTAAG 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 704
BfuI GTATCC 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 401
BisI GCNGC 4 cut(s) 95, 98, 271, 294
BlsI GCNGC 4 cut(s) 96, 99, 272, 295
Bme1390I CCNGG 3 cut(s) 250, 468, 948
Bme18I GGWCC 1 cut(s) 1026
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 1026
BmiI GGNNCC 2 cut(s) 195, 274
BmrFI CCNGG 3 cut(s) 250, 468, 948
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 2 cut(s) 53, 887
BplI GAGNNNNNCTC 2 cut(s) 589, 621
Bpu14I TTCGAA 2 cut(s) 487, 656
BpuMI CCSGG 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 159, 264, 288, 384
BsaWI WCCGGW 1 cut(s) 585
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 165, 362, 640, 833
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 3 cut(s) 340, 889, 1029
Bse21I CCTNAGG 1 cut(s) 639
BseBI CCWGG 2 cut(s) 468, 948
BseDI CCNNGG 4 cut(s) 159, 264, 288, 384
BseGI GGATG 3 cut(s) 37, 65, 1068
BseLI CCNNNNNNNGG 5 cut(s) 96, 165, 362, 640, 833
BseMII CTCAG 2 cut(s) 200, 224
BseNI ACTGG 3 cut(s) 340, 889, 1029
BseRI GAGGAG 7 cut(s) 186, 189, 192, 195, 265, 752, 1027
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 113
Bsh1236I CGCG 3 cut(s) 212, 296, 341
BshFI GGCC 4 cut(s) 293, 389, 404, 644
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 187, 312
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 3 cut(s) 249, 586, 789
BslFI GGGAC 2 cut(s) 616, 951
BslI CCNNNNNNNGG 5 cut(s) 96, 165, 362, 640, 833
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 2 cut(s) 616, 951
BsmI GAATGC 2 cut(s) 206, 368
BsnI GGCC 4 cut(s) 293, 389, 404, 644
BsoBI CYCGRG 1 cut(s) 305
Bsp119I TTCGAA 2 cut(s) 487, 656
Bsp1286I GDGCHC 3 cut(s) 187, 312, 417
Bsp143I GATC 3 cut(s) 19, 705, 1057
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 7 cut(s) 97, 156, 204, 270, 294, 341, 753
BspANI GGCC 4 cut(s) 293, 389, 404, 644
BspCNI CTCAG 2 cut(s) 199, 225
BspFNI CGCG 3 cut(s) 212, 296, 341
BspLI GGNNCC 2 cut(s) 195, 274
BspMAI CTGCAG 1 cut(s) 775
BspMI ACCTGC 1 cut(s) 704
BspT104I TTCGAA 2 cut(s) 487, 656
BspT107I GGYRCC 1 cut(s) 193
BspTI CTTAAG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 3 cut(s) 340, 889, 1029
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 4 cut(s) 159, 264, 288, 384
BssMI GATC 3 cut(s) 19, 705, 1057
BssNAI GTATAC 1 cut(s) 564
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 4 cut(s) 159, 264, 288, 384
Bst1107I GTATAC 1 cut(s) 564
Bst2UI CCWGG 2 cut(s) 468, 948
Bst4CI ACNGT 3 cut(s) 111, 457, 877
Bst6I CTCTTC 3 cut(s) 437, 590, 908
BstACI GRCGYC 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 668
BstBI TTCGAA 2 cut(s) 487, 656
BstC8I GCNNGC 3 cut(s) 757, 790, 835
BstDEI CTNAG 3 cut(s) 186, 233, 639
BstDSI CCRYGG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 831
BstF5I GGATG 3 cut(s) 37, 65, 1068
BstFNI CGCG 3 cut(s) 212, 296, 341
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 6 cut(s) 6, 102, 196, 298, 341, 381
BstKTI GATC 3 cut(s) 22, 708, 1060
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 3 cut(s) 19, 705, 1057
BstMWI GCNNNNNNNGC 6 cut(s) 191, 293, 401, 477, 752, 830
BstNI CCWGG 2 cut(s) 468, 948
BstNSI RCATGY 1 cut(s) 570
BstSCI CCNGG 3 cut(s) 248, 466, 946
BstSFI CTRYAG 1 cut(s) 771
BstSLI GKGCMC 1 cut(s) 417
BstUI CGCG 3 cut(s) 212, 296, 341
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 2 cut(s) 53, 887
BstZ17I GTATAC 1 cut(s) 564
Bsu36I CCTNAGG 1 cut(s) 639
BsuI GTATCC 1 cut(s) 850
BsuRI GGCC 4 cut(s) 293, 389, 404, 644
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 3 cut(s) 37, 65, 1068
BtsI GCAGTG 1 cut(s) 1060
BtsIMutI CAGTG 2 cut(s) 230, 1060
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 3 cut(s) 757, 790, 835
CfoI GCGC 6 cut(s) 6, 102, 196, 298, 341, 381
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 1 cut(s) 1026
CseI GACGC 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 946
Csp6I GTAC 1 cut(s) 512
CviAII CATG 3 cut(s) 160, 567, 1023
CviQI GTAC 1 cut(s) 512
DdeI CTNAG 3 cut(s) 186, 233, 639
DinI GGCGCC 1 cut(s) 195
DpnI GATC 3 cut(s) 21, 707, 1059
DpnII GATC 3 cut(s) 19, 705, 1057
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 3 cut(s) 437, 590, 908
EarI CTCTTC 3 cut(s) 437, 590, 908
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 4 cut(s) 159, 264, 288, 384
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 1026
Eco53kI GAGCTC 1 cut(s) 185
Eco57I CTGAAG 3 cut(s) 320, 446, 813
Eco81I CCTNAGG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 831
EcoRII CCWGG 2 cut(s) 466, 946
EcoT14I CCWWGG 4 cut(s) 159, 264, 288, 384
EcoT38I GRGCYC 1 cut(s) 187
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
ErhI CCWWGG 4 cut(s) 159, 264, 288, 384
FaeI CATG 3 cut(s) 163, 570, 1026
FaqI GGGAC 2 cut(s) 616, 951
FatI CATG 3 cut(s) 159, 566, 1022
FauNDI CATATG 1 cut(s) 618
FbaI TGATCA 1 cut(s) 1057
FblI GTMKAC 2 cut(s) 215, 563
Fnu4HI GCNGC 4 cut(s) 95, 98, 271, 294
FokI GGATG 3 cut(s) 44, 52, 1055
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 4 cut(s) 95, 98, 271, 294
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 849, 993
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 6 cut(s) 5, 101, 195, 297, 340, 380
GluI GCNGC 4 cut(s) 95, 98, 271, 294
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 4 cut(s) 293, 389, 404, 644
HapII CCGG 3 cut(s) 249, 586, 789
HgaI GACGC 1 cut(s) 201
HhaI GCGC 6 cut(s) 6, 102, 196, 298, 341, 381
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 3 cut(s) 163, 570, 1026
Hin6I GCGC 6 cut(s) 4, 100, 194, 296, 339, 379
HinP1I GCGC 6 cut(s) 4, 100, 194, 296, 339, 379
HincII GTYRAC 2 cut(s) 107, 778
HindII GTYRAC 2 cut(s) 107, 778
HinfI GANTC 7 cut(s) 24, 49, 321, 604, 658, 766, 844
HpaII CCGG 3 cut(s) 249, 586, 789
HphI GGTGA 3 cut(s) 728, 889, 962
Hpy166II GTNNAC 7 cut(s) 107, 216, 333, 564, 581, 778, 953
Hpy188I TCNGA 5 cut(s) 31, 189, 609, 663, 1073
Hpy8I GTNNAC 7 cut(s) 107, 216, 333, 564, 581, 778, 953
HpyAV CCTTC 6 cut(s) 366, 435, 788, 837, 912, 1030
HpyCH4III ACNGT 3 cut(s) 111, 457, 877
HpyCH4V TGCA 6 cut(s) 94, 316, 368, 480, 773, 866
HpyF10VI GCNNNNNNNGC 6 cut(s) 191, 293, 401, 477, 752, 830
HpyF3I CTNAG 3 cut(s) 186, 233, 639
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 3 cut(s) 163, 570, 1026
HspAI GCGC 6 cut(s) 4, 100, 194, 296, 339, 379
KasI GGCGCC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 788
KroNI GCCGGC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 1057
Kzo9I GATC 3 cut(s) 19, 705, 1057
LmnI GCTCC 3 cut(s) 182, 278, 829
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 15
MabI ACCWGGT 1 cut(s) 946
MaeI CTAG 2 cut(s) 849, 993
MalI GATC 3 cut(s) 21, 707, 1059
MboI GATC 3 cut(s) 19, 705, 1057
MhlI GDGCHC 3 cut(s) 187, 312, 417
MluCI AATT 6 cut(s) 120, 242, 489, 538, 888, 928
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 2 cut(s) 315, 598
MmeI TCCRAC 2 cut(s) 93, 896
MroNI GCCGGC 1 cut(s) 788
MroXI GAANNNNTTC 2 cut(s) 456, 928
MseI TTAA 2 cut(s) 669, 698
MslI CAYNNNNRTG 3 cut(s) 158, 410, 588
MspA1I CMGCKG 1 cut(s) 97
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 3 cut(s) 249, 586, 789
MspR9I CCNGG 3 cut(s) 250, 468, 948
Mva1269I GAATGC 2 cut(s) 206, 368
MvaI CCWGG 2 cut(s) 468, 948
MvnI CGCG 3 cut(s) 212, 296, 341
MwoI GCNNNNNNNGC 6 cut(s) 191, 293, 401, 477, 752, 830
NaeI GCCGGC 1 cut(s) 790
NarI GGCGCC 1 cut(s) 194
NciI CCSGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 159
NdeI CATATG 1 cut(s) 618
NdeII GATC 3 cut(s) 19, 705, 1057
NgoMIV GCCGGC 1 cut(s) 788
NlaIII CATG 3 cut(s) 163, 570, 1026
NlaIV GGNNCC 2 cut(s) 195, 274
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 570
NspV TTCGAA 2 cut(s) 487, 656
PaeR7I CTCGAG 1 cut(s) 305
PaqCI CACCTGC 1 cut(s) 704
PctI GAATGC 2 cut(s) 206, 368
PdiI GCCGGC 1 cut(s) 790
PdmI GAANNNNTTC 2 cut(s) 456, 928
PfeI GAWTC 5 cut(s) 24, 49, 658, 766, 844
PkrI GCNGC 4 cut(s) 96, 99, 272, 295
PleI GAGTC 2 cut(s) 315, 598
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 2 cut(s) 315, 598
Psp124BI GAGCTC 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 466, 946
PspGI CCWGG 2 cut(s) 466, 946
PspN4I GGNNCC 2 cut(s) 195, 274
PspPI GGNCC 1 cut(s) 1026
PspXI VCTCGAGB 1 cut(s) 305
PstI CTGCAG 1 cut(s) 775
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
RseI CAYNNNNRTG 3 cut(s) 158, 410, 588
SacI GAGCTC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 669, 698
SatI GCNGC 4 cut(s) 95, 98, 271, 294
Sau3AI GATC 3 cut(s) 19, 705, 1057
Sau96I GGNCC 1 cut(s) 1026
SchI GAGTC 2 cut(s) 315, 598
ScrFI CCNGG 3 cut(s) 250, 468, 948
SduI GDGCHC 3 cut(s) 187, 312, 417
SexAI ACCWGGT 1 cut(s) 946
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 771
SfoI GGCGCC 1 cut(s) 195
Sfr274I CTCGAG 1 cut(s) 305
SfuI TTCGAA 2 cut(s) 487, 656
SinI GGWCC 1 cut(s) 1026
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 3 cut(s) 158, 410, 588
SmlI CTYRAG 2 cut(s) 305, 668
SmoI CTYRAG 2 cut(s) 305, 668
Sse9I AATT 6 cut(s) 120, 242, 489, 538, 888, 928
SsiI CCGC 7 cut(s) 97, 156, 204, 270, 294, 341, 753
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 2 cut(s) 849, 993
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 248, 466, 946
StyI CCWWGG 4 cut(s) 159, 264, 288, 384
TaaI ACNGT 3 cut(s) 111, 457, 877
TaqI TCGA 4 cut(s) 22, 306, 487, 656
TasI AATT 6 cut(s) 120, 242, 489, 538, 888, 928
TauI GCSGC 3 cut(s) 100, 273, 296
TfiI GAWTC 5 cut(s) 24, 49, 658, 766, 844
Tru1I TTAA 2 cut(s) 669, 698
Tru9I TTAA 2 cut(s) 669, 698
TscAI CASTG 2 cut(s) 237, 1060
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 635, 831
TspGWI ACGGA 1 cut(s) 1024
TspRI CASTG 2 cut(s) 237, 1060
Vha464I CTTAAG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 1026
XagI CCTNNNNNAGG 1 cut(s) 831
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 570
XhoI CTCGAG 1 cut(s) 305
XmiI GTMKAC 2 cut(s) 215, 563
XmnI GAANNNNTTC 2 cut(s) 456, 928
XspI CTAG 2 cut(s) 849, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.