Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011031

Physical Location & Seq

Genomic Coordinates Forward (+)

13414945 .. 13416362

Gene Structure 1418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGAACTGGGATTTGCAAGCTATGGTAAGAGGGTGCAATACCGATATTGATGAAGTCATGGAGGACTCCCAGATACCATATTTCTTCGCTCCTTTAAGCCTTCAGGAAGACGACGAGCTTTTTCAAGCTTATTTTCCTCAGGCCTTTGAAGCCACAACTACTTTAGATGAATTGGAGGAGCTTTACAAGCCTTTTTACGCAGTTAATCAAATTACATCCCCACCAACTATTCTTGCCTCCTCCATATCTGTTCCCCAAGAAGTCATCACAGAAGCACCCAAGCTGATAAAAAACATGAAGGAATCAGCACCTATTTGTAAAAGAATAAGGGTTGTGAAAGAGGTTAAAGCAGAAGATCTCTTTTCGGATGTGTGGGCGTGGCGTAAGTACGGGCAAAAACCCATCAAGGGATCGCCACATCCGAGGAGCTATTACAGATGCAGCAGCTCAAAAGGATGTTCAGCGAGAAAACAAGTAGAAAGGAGCTGTTCCAATCCTGAAACGTTCATCATAACCTACACTGCAGAACACAACCATGTTCATCCAACTCGTCGAAACTCTCTTGCTGGCAGCACCAGAAGCAAGTTCCCTTCATCTAAAAACAAGGACAAATGTAGTAGTTCTTCGAATTCTCTGGCTATGCCTAATCTTGCCGCATCCATTGAAGATGACCGTGAGTTTGTGGAAAGCGCGGATATTAATATCGTAAAAGAGGAAGCGAAATTGTTGGAAGAGGATGAAATTAGTAATGAAAATGTCGTGTTGGGTACTATGGTGAGTGATGAAATATTCCCAAGCTTAGAGGATTTGGATAGAAAGTTGGAACCAGTCATAGATGGTTGGTTTTCGGATCAATTTTTGGACAATTTTCCAAGTCCTTGGTTCAATATTAATGGTCACTCTAATACTGTAACCGGTGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

310

Amino Acids

34.94

Weight (kDa)

4.79

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	124 - 180	1.7e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23550
fragaria_vesca	FvH4_5g03210 FvH4_5g03210
malus_domestica	MD06G1091200.v1.1 MD14G1112200.v1.1
prunus_persica	Prupe.5G106700_v2.0.a1 Prupe.5G106700_v2.0.a1
pyrus_communis	pycom06g08670 pycom14g10690
rosa_chinensis	RchiOBHm_Chr7g0196571
rosa_laevigata	RLG00000004005
rosa_multiflora	Rmu_sc0006080.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259200
rosa_rugosa	Rorug07G0034700 Rorug07G0034800
rosa_samantha	Rh7AG158800 Rh7BG160800 Rh7CG167200 Rh7DG160000
rosa_wichuraiana	Rw7G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	695
AciI	CCGC	2 cut(s)	657, 695
AclI	AACGTT	1 cut(s)	506
AclWI	GGATC	2 cut(s)	421, 861
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	392, 772
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgeI	ACCGGT	1 cut(s)	917
AgsI	TTSAA	4 cut(s)	128, 152, 668, 889
AluBI	AGCT	9 cut(s)	23, 121, 131, 184, 286, 432, 450, 489, 801
AluI	AGCT	9 cut(s)	23, 121, 131, 184, 286, 432, 450, 489, 801
AlwI	GGATC	2 cut(s)	421, 861
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	444, 447, 573
ApoI	RAATTY	1 cut(s)	631
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AseI	ATTAAT	2 cut(s)	702, 894
AsiGI	ACCGGT	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	695
AsuHPI	GGTGA	1 cut(s)	790
AsuII	TTCGAA	1 cut(s)	629
AxyI	CCTNAGG	1 cut(s)	141
BaeI	ACNNNNGTAYC	2 cut(s)	762, 795
BarI	GAAGNNNNNNTAC	2 cut(s)	610, 642
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	456, 459, 585
BccI	CCATC	2 cut(s)	413, 833
BfmI	CTRYAG	1 cut(s)	525
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	4 cut(s)	445, 448, 574, 657
BlsI	GCNGC	4 cut(s)	446, 449, 575, 658
BmiI	GGNNCC	1 cut(s)	828
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	431, 668
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	425, 881
BsaWI	WCCGGW	1 cut(s)	917
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	2 cut(s)	14, 830
Bse21I	CCTNAGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	425, 881
BseGI	GGATG	7 cut(s)	218, 376, 421, 464, 544, 659, 745
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	2 cut(s)	14, 830
BseRI	GAGGAG	3 cut(s)	194, 232, 442
BseXI	GCAGC	3 cut(s)	456, 459, 585
Bsh1236I	CGCG	1 cut(s)	695
BshFI	GGCC	1 cut(s)	146
BshTI	ACCGGT	1 cut(s)	917
BsiSI	CCGG	1 cut(s)	918
BslI	CCNNNNNNNGG	1 cut(s)	410
BsnI	GGCC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	629
Bsp143I	GATC	3 cut(s)	358, 413, 853
BspACI	CCGC	2 cut(s)	657, 695
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	695
BspLI	GGNNCC	1 cut(s)	828
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	2 cut(s)	421, 861
BspT104I	TTCGAA	1 cut(s)	629
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	2 cut(s)	14, 830
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	2 cut(s)	425, 881
BssMI	GATC	3 cut(s)	358, 413, 853
BssT1I	CCWWGG	1 cut(s)	881
Bst4CI	ACNGT	2 cut(s)	677, 913
Bst6I	CTCTTC	1 cut(s)	729
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	21, 571, 925
BstDEI	CTNAG	2 cut(s)	141, 802
BstF5I	GGATG	7 cut(s)	218, 376, 421, 464, 544, 659, 745
BstFNI	CGCG	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	3 cut(s)	361, 416, 856
BstMBI	GATC	3 cut(s)	358, 413, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 190, 582
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	695
BstV1I	GCAGC	3 cut(s)	456, 459, 585
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	882
BstYI	RGATCY	1 cut(s)	358
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	7 cut(s)	218, 376, 421, 464, 544, 659, 745
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	3 cut(s)	21, 571, 925
CfoI	GCGC	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	917
Csp6I	GTAC	2 cut(s)	391, 771
CspAI	ACCGGT	1 cut(s)	917
CviAII	CATG	3 cut(s)	61, 298, 539
CviQI	GTAC	2 cut(s)	391, 771
DdeI	CTNAG	2 cut(s)	141, 802
DpnI	GATC	3 cut(s)	360, 415, 855
DpnII	GATC	3 cut(s)	358, 413, 853
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	881
Eco147I	AGGCCT	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	881
ErhI	CCWWGG	1 cut(s)	881
FaeI	CATG	3 cut(s)	64, 301, 542
FatI	CATG	3 cut(s)	60, 297, 538
Fnu4HI	GCNGC	4 cut(s)	445, 448, 574, 657
FokI	GGATG	7 cut(s)	205, 383, 408, 471, 531, 646, 752
Fsp4HI	GCNGC	4 cut(s)	445, 448, 574, 657
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	4 cut(s)	445, 448, 574, 657
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	918
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	3 cut(s)	64, 301, 542
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HindIII	AAGCTT	2 cut(s)	129, 799
HinfI	GANTC	2 cut(s)	68, 305
HpaII	CCGG	1 cut(s)	918
HphI	GGTGA	1 cut(s)	790
Hpy188I	TCNGA	3 cut(s)	370, 426, 853
Hpy188III	TCNNGA	2 cut(s)	107, 500
Hpy99I	CGWCG	2 cut(s)	119, 558
HpyAV	CCTTC	3 cut(s)	113, 295, 603
HpyCH4III	ACNGT	2 cut(s)	677, 913
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	4 cut(s)	19, 39, 444, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 190, 582
HpyF3I	CTNAG	2 cut(s)	141, 802
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	3 cut(s)	64, 301, 542
HspAI	GCGC	1 cut(s)	693
Kzo9I	GATC	3 cut(s)	358, 413, 853
LmnI	GCTCC	4 cut(s)	97, 181, 429, 486
LpnPI	CCDG	8 cut(s)	86, 92, 128, 513, 555, 592, 623, 843
Lsp1109I	GCAGC	3 cut(s)	456, 459, 585
LweI	GCATC	2 cut(s)	431, 668
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	2 cut(s)	899, 913
MalI	GATC	3 cut(s)	360, 415, 855
MboI	GATC	3 cut(s)	358, 413, 853
MboII	GAAGA	6 cut(s)	79, 122, 368, 618, 680, 746
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	7 cut(s)	173, 213, 631, 725, 744, 857, 868
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	3 cut(s)	572, 711, 804
MseI	TTAA	5 cut(s)	98, 207, 348, 702, 894
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	1 cut(s)	918
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	3 cut(s)	152, 190, 582
NdeII	GATC	3 cut(s)	358, 413, 853
NlaIII	CATG	3 cut(s)	64, 301, 542
NlaIV	GGNNCC	1 cut(s)	828
NmuCI	GTSAC	1 cut(s)	899
NspV	TTCGAA	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	917
PkrI	GCNGC	4 cut(s)	446, 449, 575, 658
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PshBI	ATTAAT	2 cut(s)	702, 894
Psp1406I	AACGTT	1 cut(s)	506
PspN4I	GGNNCC	1 cut(s)	828
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	392, 772
RsaNI	GTAC	2 cut(s)	391, 771
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	5 cut(s)	98, 207, 348, 702, 894
SatI	GCNGC	4 cut(s)	445, 448, 574, 657
Sau3AI	GATC	3 cut(s)	358, 413, 853
SchI	GAGTC	1 cut(s)	62
SfaNI	GCATC	2 cut(s)	431, 668
SfcI	CTRYAG	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	7 cut(s)	173, 213, 631, 725, 744, 857, 868
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	657, 695
SspI	AATATT	2 cut(s)	792, 892
StuI	AGGCCT	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	2 cut(s)	677, 913
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	556, 629
TasI	AATT	7 cut(s)	173, 213, 631, 725, 744, 857, 868
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	5 cut(s)	98, 207, 348, 702, 894
Tru9I	TTAA	5 cut(s)	98, 207, 348, 702, 894
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	899
TseI	GCWGC	3 cut(s)	444, 447, 573
Tsp45I	GTSAC	1 cut(s)	899
TspDTI	ATGAA	9 cut(s)	69, 186, 314, 499, 533, 585, 756, 768, 801
TspRI	CASTG	1 cut(s)	529
VspI	ATTAAT	2 cut(s)	702, 894
XapI	RAATTY	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.