pycom14g11040

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012304
Physical Location & Seq
Reverse (-)
13805075 .. 13807574
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1086 bp
ATGCTTCTGCTAGTAGGCAGAGGGTTCAAGCACACACTCCCATTCCCCGCCTACCACCACCGCCTACACCTCCACCTCTCCCGGTCTCTCATGGCCGCCGCTACTTCACCTAAGCGAGTGGGGACCCATAACGGCAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACAGACAAGTTCTCCAACGCCGAAATCGTCCGCACTCGCGACCCCCTGGTTTTGGAGGGTCTGGATGCTGTGCTTGATGTTGGGGGTATATATGATTCTAGTCGGGATCGATACGATCATCACCAGAAGGGTTTCGAGGAGGTTTTCGGGCACGAGTTTAAGACCAAGCTGAGCAGTGCTGGTCTGGTTTACAAGCATTTCGGGAAGCAAATAATAGCGAAGGAGCTTCAGGTCGATGAAGGTCACCTCGATGTGCAACGGTTGTTCTTGGCTGTGTACAAAAGCTTTATGGAGGCAATTGATGCTGTTGACAACGGGATCGATCGGTATGATACGGACCAGCCTCCAAGATATGTGAATAATACACACTTGTCTTCAAGGGTGGGCAGGTTGAATTTGGATTGGATAGATCCAGATCAATCATCTGAAAAGGAGAATGAAGCCTTTCAAAGAGCAATGGAACTTGCAGGCAGTGAATTTTTAAGTAGTGTCCGTTTTCATGCAAAATCATGGTTACCAGCTCGATCTATCGTGATGGAGTGTCTCTTAGCAAGATGGAGTGTTGATCCAAGTGGTGAAATCATGGTTTTGAATCGATTTTGCCCTTGGAAGCTTCATTTATTTGAACTTGAAGAGGAAATGAAGATTGAGCCGCCCATTAAATATGTTCTCTATGAGGATGATAGAAGCAAACACTGGAGAGTTCAAGCGGTGGCAGTCGCTCCTGATAGATTTGAGAGCCGAAAGGCTCTTGCATCACAATGGCGGGGGCTTAGGGATGAGGAGCTCTCAAAGGAGGCTGGGATTCCCGGATGTGTTTTCGTTCACATGAGTGGATTTATAGGAGGAAATCAAAGTTATGAAGGTGCTCTTGCCATGGCAAAAGCGAGTTTGAAGTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

362

Amino Acids

41.12

Weight (kDa)

6.29

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 40 - 358 2.9e-136 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 558
AccII CGCG 1 cut(s) 219
AciI CCGC 8 cut(s) 48, 61, 96, 99, 211, 833, 890, 946
AclWI GGATC 4 cut(s) 294, 506, 584, 740
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 574, 656
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 9 cut(s) 28, 558, 574, 629, 772, 806, 812, 887, 1075
AjnI CCWGG 1 cut(s) 225
AleI CACNNNNGTG 1 cut(s) 1011
AluBI AGCT 7 cut(s) 138, 349, 406, 465, 701, 793, 967
AluI AGCT 7 cut(s) 138, 349, 406, 465, 701, 793, 967
Alw21I GWGCWC 2 cut(s) 969, 1051
Alw26I GTCTC 2 cut(s) 90, 728
AlwI GGATC 4 cut(s) 294, 506, 584, 740
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 135, 162
ApoI RAATTY 2 cut(s) 574, 656
Asp700I GAANNNNTTC 2 cut(s) 311, 624
AspS9I GGNCC 2 cut(s) 123, 517
AsuC2I CCSGG 2 cut(s) 82, 990
AsuHPI GGTGA 4 cut(s) 99, 293, 416, 767
AvaII GGWCC 2 cut(s) 123, 517
BaeGI GKGCMC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 969
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 2 cut(s) 969, 1051
BbvI GCAGC 2 cut(s) 147, 149
BccI CCATC 2 cut(s) 709, 729
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 2 cut(s) 82, 990
BcoDI GTCTC 2 cut(s) 90, 728
BfaI CTAG 2 cut(s) 11, 279
BfuAI ACCTGC 1 cut(s) 558
BisI GCNGC 5 cut(s) 96, 99, 136, 163, 833
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 5 cut(s) 97, 100, 137, 164, 834
Bme1390I CCNGG 3 cut(s) 82, 227, 990
Bme18I GGWCC 2 cut(s) 123, 517
BmgT120I GGNCC 2 cut(s) 123, 517
BmiI GGNNCC 2 cut(s) 124, 125
BmrFI CCNGG 3 cut(s) 82, 227, 990
BmsI GCATC 3 cut(s) 235, 472, 944
BpiI GAAGAC 1 cut(s) 546
BplI GAGNNNNNCTC 2 cut(s) 953, 985
BpmI CTGGAG 1 cut(s) 898
Bpu10I CCTNAGC 2 cut(s) 111, 953
Bpu1102I GCTNAGC 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 82, 990
Bsa29I ATCGAT 3 cut(s) 289, 501, 775
BsaBI GATNNNNATC 1 cut(s) 594
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 4 cut(s) 157, 225, 785, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 881
Bse3DI GCAATG 1 cut(s) 642
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 3 cut(s) 289, 501, 775
BseDI CCNNGG 4 cut(s) 157, 225, 785, 1056
BseGI GGATG 4 cut(s) 250, 865, 964, 998
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 881
BseRI GAGGAG 2 cut(s) 332, 977
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 2 cut(s) 147, 149
BseYI CCCAGC 1 cut(s) 980
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 505
BshFI GGCC 1 cut(s) 95
BshVI ATCGAT 3 cut(s) 289, 501, 775
BsiEI CGRYCG 1 cut(s) 505
BsiHKAI GWGCWC 2 cut(s) 969, 1051
BsiSI CCGG 2 cut(s) 82, 990
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 2 cut(s) 90, 728
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 3 cut(s) 333, 969, 1051
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 8 cut(s) 286, 295, 498, 502, 589, 595, 704, 745
Bsp1720I GCTNAGC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 1056
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 8 cut(s) 48, 61, 96, 99, 211, 833, 890, 946
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 342
BspDI ATCGAT 3 cut(s) 289, 501, 775
BspFNI CGCG 1 cut(s) 219
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 124, 125
BspMI ACCTGC 1 cut(s) 558
BspPI GGATC 4 cut(s) 294, 506, 584, 740
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 1 cut(s) 881
BssECI CCNNGG 4 cut(s) 157, 225, 785, 1056
BssMI GATC 8 cut(s) 286, 295, 498, 502, 589, 595, 704, 745
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 785, 1056
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 807
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 456
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 4 cut(s) 111, 350, 727, 953
BstDSI CCRYGG 1 cut(s) 1056
BstEII GGTNACC 2 cut(s) 422, 693
BstF5I GGATG 4 cut(s) 250, 865, 964, 998
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 8 cut(s) 289, 298, 501, 505, 592, 598, 707, 748
BstMAI GTCTC 2 cut(s) 90, 728
BstMBI GATC 8 cut(s) 286, 295, 498, 502, 589, 595, 704, 745
BstMCI CGRYCG 1 cut(s) 505
BstMWI GCNNNNNNNGC 2 cut(s) 144, 482
BstNI CCWGG 1 cut(s) 227
BstPI GGTNACC 2 cut(s) 422, 693
BstSCI CCNGG 3 cut(s) 80, 225, 988
BstSLI GKGCMC 1 cut(s) 333
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 147, 149
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
Bsu15I ATCGAT 3 cut(s) 289, 501, 775
BsuRI GGCC 1 cut(s) 95
BsuTUI ATCGAT 3 cut(s) 289, 501, 775
BtgI CCRYGG 1 cut(s) 1056
BtsCI GGATG 4 cut(s) 250, 865, 964, 998
BtsI GCAGTG 3 cut(s) 142, 361, 658
BtsIMutI CAGTG 4 cut(s) 142, 361, 658, 874
BtuMI TCGCGA 1 cut(s) 219
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 649
CciI TCATGA 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 123, 517
ClaI ATCGAT 3 cut(s) 289, 501, 775
Csp6I GTAC 1 cut(s) 457
CviAII CATG 7 cut(s) 91, 169, 680, 690, 763, 1009, 1057
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 4 cut(s) 111, 350, 727, 953
DpnI GATC 8 cut(s) 288, 297, 500, 504, 591, 597, 706, 747
DpnII GATC 8 cut(s) 286, 295, 498, 502, 589, 595, 704, 745
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 2 cut(s) 785, 1056
Eco24I GRGCYC 1 cut(s) 969
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 123, 517
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 1 cut(s) 392
Eco91I GGTNACC 2 cut(s) 422, 693
EcoICRI GAGCTC 1 cut(s) 967
EcoO109I RGGNCCY 1 cut(s) 123
EcoO65I GGTNACC 2 cut(s) 422, 693
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 785, 1056
EcoT38I GRGCYC 1 cut(s) 969
ErhI CCWWGG 2 cut(s) 785, 1056
FaeI CATG 7 cut(s) 94, 172, 683, 693, 766, 1012, 1060
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 136
FatI CATG 7 cut(s) 90, 168, 679, 689, 762, 1008, 1056
FauI CCCGC 2 cut(s) 55, 939
Fnu4HI GCNGC 5 cut(s) 96, 99, 136, 163, 833
FokI GGATG 4 cut(s) 257, 872, 971, 1005
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 5 cut(s) 96, 99, 136, 163, 833
FspBI CTAG 2 cut(s) 11, 279
GluI GCNGC 5 cut(s) 96, 99, 136, 163, 833
GsaI CCCAGC 1 cut(s) 984
GsuI CTGGAG 1 cut(s) 898
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 82, 990
Hin1II CATG 7 cut(s) 94, 172, 683, 693, 766, 1012, 1060
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 2 cut(s) 463, 791
HinfI GANTC 4 cut(s) 172, 275, 772, 985
HpaII CCGG 2 cut(s) 82, 990
HphI GGTGA 4 cut(s) 99, 293, 416, 767
Hpy166II GTNNAC 4 cut(s) 370, 457, 490, 1006
Hpy188I TCNGA 1 cut(s) 607
Hpy188III TCNNGA 8 cut(s) 169, 218, 242, 284, 382, 593, 712, 905
Hpy8I GTNNAC 4 cut(s) 370, 457, 490, 1006
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 4 cut(s) 301, 394, 413, 1037
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4V TGCA 4 cut(s) 436, 647, 683, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 482
HpyF3I CTNAG 4 cut(s) 111, 350, 727, 953
Hsp92II CATG 7 cut(s) 94, 172, 683, 693, 766, 1012, 1060
KflI GGGWCCC 1 cut(s) 123
Kzo9I GATC 8 cut(s) 286, 295, 498, 502, 589, 595, 704, 745
LmnI GCTCC 3 cut(s) 403, 907, 964
Lsp1109I GCAGC 2 cut(s) 147, 149
LweI GCATC 3 cut(s) 235, 472, 944
MaeI CTAG 2 cut(s) 11, 279
MaeIII GTNAC 2 cut(s) 422, 693
MalI GATC 8 cut(s) 288, 297, 500, 504, 591, 597, 706, 747
MboI GATC 8 cut(s) 286, 295, 498, 502, 589, 595, 704, 745
MboII GAAGA 3 cut(s) 546, 824, 835
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 3 cut(s) 333, 969, 1051
MluCI AATT 3 cut(s) 477, 574, 656
MmeI TCCRAC 1 cut(s) 219
MroXI GAANNNNTTC 2 cut(s) 311, 624
MseI TTAA 3 cut(s) 339, 662, 840
MslI CAYNNNNRTG 3 cut(s) 429, 940, 1011
MspI CCGG 2 cut(s) 82, 990
MspR9I CCNGG 3 cut(s) 82, 227, 990
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 144, 482
NciI CCSGG 2 cut(s) 82, 990
NcoI CCATGG 1 cut(s) 1056
NdeII GATC 8 cut(s) 286, 295, 498, 502, 589, 595, 704, 745
NlaIII CATG 7 cut(s) 94, 172, 683, 693, 766, 1012, 1060
NlaIV GGNNCC 2 cut(s) 124, 125
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 422
NruI TCGCGA 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 1011
PagI TCATGA 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 2 cut(s) 311, 624
PfeI GAWTC 4 cut(s) 172, 275, 772, 985
PfoI TCCNGGA 1 cut(s) 988
PkrI GCNGC 5 cut(s) 97, 100, 137, 164, 834
Ple19I CGATCG 1 cut(s) 505
PpuMI RGGWCCY 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 969
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 225
PspEI GGTNACC 2 cut(s) 422, 693
PspFI CCCAGC 1 cut(s) 980
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 124, 125
PspPI GGNCC 2 cut(s) 123, 517
PspPPI RGGWCCY 1 cut(s) 123
PsuI RGATCY 1 cut(s) 589
PvuI CGATCG 1 cut(s) 505
RruI TCGCGA 1 cut(s) 219
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 3 cut(s) 429, 940, 1011
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 3 cut(s) 339, 662, 840
SatI GCNGC 5 cut(s) 96, 99, 136, 163, 833
Sau3AI GATC 8 cut(s) 286, 295, 498, 502, 589, 595, 704, 745
Sau96I GGNCC 2 cut(s) 123, 517
ScrFI CCNGG 3 cut(s) 82, 227, 990
SduI GDGCHC 3 cut(s) 333, 969, 1051
SfaNI GCATC 3 cut(s) 235, 472, 944
SinI GGWCC 2 cut(s) 123, 517
SmiMI CAYNNNNRTG 3 cut(s) 429, 940, 1011
Sse9I AATT 3 cut(s) 477, 574, 656
SsiI CCGC 8 cut(s) 48, 61, 96, 99, 211, 833, 890, 946
SspMI CTAG 2 cut(s) 11, 279
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 3 cut(s) 80, 225, 988
StyI CCWWGG 2 cut(s) 785, 1056
TaaI ACNGT 1 cut(s) 441
TaqI TCGA 7 cut(s) 289, 315, 414, 429, 501, 703, 775
TasI AATT 3 cut(s) 477, 574, 656
TatI WGTACW 1 cut(s) 456
TauI GCSGC 3 cut(s) 98, 101, 835
TfiI GAWTC 4 cut(s) 172, 275, 772, 985
Tru1I TTAA 3 cut(s) 339, 662, 840
Tru9I TTAA 3 cut(s) 339, 662, 840
TscAI CASTG 4 cut(s) 149, 361, 658, 881
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 2 cut(s) 135, 162
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 7 cut(s) 157, 432, 633, 668, 785, 836, 1056
TspGWI ACGGA 2 cut(s) 530, 662
TspRI CASTG 4 cut(s) 149, 361, 658, 881
VpaK11BI GGWCC 2 cut(s) 123, 517
XapI RAATTY 2 cut(s) 574, 656
XmnI GAANNNNTTC 2 cut(s) 311, 624
XspI CTAG 2 cut(s) 11, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.