pycom14g12530
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0007675
Physical Location & Seq
Reverse (-)
15529811 .. 15531119
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGTTTTATTCTTCATTCAAACATAGCACGAAACAACTCACTAGCAATACCCCCTCTCCAAATTCTTCTCTTGTTCTGTCTATAAATATTCTACATGGCTGCTTCACATTTGCTCATCTCTTAACAGAGGCCAATAAGTTCCAAGAAACAAAGGCCCTTTCATTTTTCAAAATAATGGACAAGTTCAACTTTCTGAGAAATGGGATGACCAGATTGCCTCCTGGTTTCCGATTCCAGCCAACAGATGAAGAACTTGTCTTTCAGTACCTGAGATGCAAAGTCTTTTCATGCCCCCTTCCTGCTTCCATTATTCCTGAGATCGACGTTTGCCTGTATGATCCGTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGGTATTTCTTCAGCAACAGAGAATCAAAATACCGGAATGGAAACCGAGCTAACAGGGTGACAAGTTCCGGTTACTGGAAAGCGACCGGCGTTGACAAAAAGATTGTATCTTCAAGGAAGAATAATATTGTGGGGAAGAAAAAGACTCTAGTTTTCTACAAAGGGAAGTCTCCAAATGTTTCTAAGACTGATTGGGTCATGCATGAATATTGCCTTGTCAATGCAGAAACCACAGCTTCCATTCACACAACTGAGAATGCTTTAACCCCGAAAGGAAACTGGGTTTTGTGTCGCGTGTTTTTGAAGAAAAGAAGTGGCAAGACGGATGAGGAGATTATGGTGAATTACAATGGCATCAGAGTTTGCGATAATGCAAGTCCTGTATCTTCTTCTTCATCTTGTTCGAGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

262

Amino Acids

29.67

Weight (kDa)

9.33

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 73 - 196 3.6e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 666
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 367
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 5 cut(s) 19, 169, 187, 486, 676
AjnI CCWGG 2 cut(s) 220, 352
AluBI AGCT 2 cut(s) 422, 608
AluI AGCT 2 cut(s) 422, 608
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 268
AoxI GGCC 2 cut(s) 129, 153
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 3 cut(s) 368, 442, 724
BbvI GCAGC 1 cut(s) 86
BciT130I CCWGG 2 cut(s) 222, 354
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 3 cut(s) 42, 521, 784
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 222, 354
BmgT120I GGNCC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 222, 354
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 2 cut(s) 263, 735
BmuI ACTGGG 1 cut(s) 661
BsaJI CCNNGG 1 cut(s) 341
BsaWI WCCGGW 2 cut(s) 405, 440
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 2 cut(s) 452, 656
BseBI CCWGG 2 cut(s) 222, 354
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 2 cut(s) 210, 703
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMII CTCAG 4 cut(s) 185, 260, 306, 615
BseNI ACTGG 2 cut(s) 452, 656
BseRI GAGGAG 1 cut(s) 716
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 666
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 2 cut(s) 131, 155
BsiEI CGRYCG 1 cut(s) 459
BsiSI CCGG 3 cut(s) 406, 441, 459
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 1 cut(s) 546
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 2 cut(s) 131, 155
Bsp143I GATC 2 cut(s) 318, 337
BspANI GGCC 2 cut(s) 131, 155
BspCNI CTCAG 4 cut(s) 186, 261, 307, 616
BspFNI CGCG 1 cut(s) 666
BspPI GGATC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 2 cut(s) 452, 656
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 2 cut(s) 318, 337
Bst2UI CCWGG 2 cut(s) 222, 354
BstDEI CTNAG 5 cut(s) 194, 269, 315, 555, 624
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 210, 703
BstFNI CGCG 1 cut(s) 666
BstKTI GATC 2 cut(s) 321, 340
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 2 cut(s) 318, 337
BstMCI CGRYCG 1 cut(s) 459
BstNI CCWGG 2 cut(s) 222, 354
BstSCI CCNGG 2 cut(s) 220, 352
BstUI CGCG 1 cut(s) 666
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 2 cut(s) 131, 155
BtgI CCRYGG 1 cut(s) 341
BtsCI GGATG 2 cut(s) 210, 703
CaiI CAGNNNCTG 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 265
CviAII CATG 4 cut(s) 95, 288, 571, 575
CviJI RGCY 6 cut(s) 99, 131, 155, 238, 422, 608
CviKI_1 RGCY 6 cut(s) 99, 131, 155, 238, 422, 608
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 5 cut(s) 194, 269, 315, 555, 624
DpnI GATC 2 cut(s) 320, 339
DpnII GATC 2 cut(s) 318, 337
Eco57I CTGAAG 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 220, 352
EcoT22I ATGCAT 1 cut(s) 576
FaeI CATG 4 cut(s) 98, 291, 574, 578
FaiI YATR 8 cut(s) 24, 83, 96, 289, 336, 572, 576, 710
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 4 cut(s) 94, 287, 570, 574
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 2 cut(s) 217, 710
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 3 cut(s) 42, 521, 784
GluI GCNGC 1 cut(s) 100
HaeIII GGCC 2 cut(s) 131, 155
HapII CCGG 3 cut(s) 406, 441, 459
Hin1II CATG 4 cut(s) 98, 291, 574, 578
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 3 cut(s) 231, 395, 517
HpaII CCGG 3 cut(s) 406, 441, 459
HphI GGTGA 3 cut(s) 368, 442, 724
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 3 cut(s) 195, 230, 731
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 4 cut(s) 276, 574, 596, 746
HpyF3I CTNAG 5 cut(s) 194, 269, 315, 555, 624
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 4 cut(s) 98, 291, 574, 578
Kzo9I GATC 2 cut(s) 318, 337
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 263, 735
MaeI CTAG 3 cut(s) 42, 521, 784
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 430, 443
MalI GATC 2 cut(s) 320, 339
MboI GATC 2 cut(s) 318, 337
MluCI AATT 2 cut(s) 61, 715
MlyI GAGTC 1 cut(s) 511
MnlI CCTC 5 cut(s) 64, 121, 228, 366, 694
Mph1103I ATGCAT 1 cut(s) 576
MseI TTAA 2 cut(s) 122, 635
MspI CCGG 3 cut(s) 406, 441, 459
MspR9I CCNGG 2 cut(s) 222, 354
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 2 cut(s) 222, 354
MvnI CGCG 1 cut(s) 666
NdeII GATC 2 cut(s) 318, 337
NlaIII CATG 4 cut(s) 98, 291, 574, 578
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 576
PctI GAATGC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 231, 395
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
Psp6I CCWGG 2 cut(s) 220, 352
PspGI CCWGG 2 cut(s) 220, 352
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 268
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 122, 635
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 2 cut(s) 318, 337
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 2 cut(s) 222, 354
SetI ASST 6 cut(s) 270, 327, 358, 377, 424, 610
SfaNI GCATC 2 cut(s) 263, 735
Sse9I AATT 2 cut(s) 61, 715
SspI AATATT 3 cut(s) 88, 499, 581
SspMI CTAG 3 cut(s) 42, 521, 784
StyD4I CCNGG 2 cut(s) 220, 352
TaiI ACGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 321, 776
TasI AATT 2 cut(s) 61, 715
TfiI GAWTC 2 cut(s) 231, 395
Tru1I TTAA 2 cut(s) 122, 635
Tru9I TTAA 2 cut(s) 122, 635
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 5 cut(s) 150, 261, 276, 591, 756
TspGWI ACGGA 2 cut(s) 330, 710
XapI RAATTY 1 cut(s) 61
XspI CTAG 3 cut(s) 42, 521, 784
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.