pycom14g12780

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013671
Physical Location & Seq
Forward (+)
15812585 .. 15812842
258 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGGCATCAATGGCAGCAAGAACTAATAGTATCGCCACGCTACGCCTTCCGGGGGACGTGTTGATGGCGGGGAAGAATGAGACGGCTACCAAATTAGGGTTTTATTCTTCCAGGCGTGTAGCAATGATCACGAGAAAAAATGGAAACTTTTCAGTGAGGGCCGGTGCCGGCGGAACTCCTAGAAGTGTGGAGACAATCAATGGGAACGATCAATGGTGTTCATGTGGGAGAGGCTACATTATTTGGAAACAAGAATAG

Protein Analysis

86

Amino Acids

9.2

Weight (kDa)

10.28

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08660
malus_domestica MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica Prupe.5G148400_v2.0.a1
pyrus_communis pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis RchiOBHm_Chr7g0189721
rosa_laevigata RLG00000004595
rosa_multiflora Rmu_sc0001924.1_g000022
rosa_roxburghii Rroxscaffold_3G00265230
rosa_rugosa Rorug06G0499300
rosa_samantha Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana Rw7G009050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AciI CCGC 2 cut(s) 68, 171
AfiI CCNNNNNNNGG 2 cut(s) 52, 96
AflIII ACRYGT 1 cut(s) 57
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 74, 185
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 51
BanI GGYRCC 1 cut(s) 164
BauI CACGAG 1 cut(s) 130
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 126
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 74, 185
BfaI CTAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 51, 112
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 51, 112
BmsI GCATC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 96
Bse118I RCCGGY 2 cut(s) 161, 167
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 52, 96
BseMI GCAATG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 3 cut(s) 50, 162, 168
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 52, 96
BsmAI GTCTC 2 cut(s) 74, 185
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 126, 208
BspACI CCGC 2 cut(s) 68, 171
BspANI GGCC 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 2 cut(s) 161, 167
BssAI RCCGGY 2 cut(s) 161, 167
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 2 cut(s) 126, 208
BssSI CACGAG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 169
BstKTI GATC 2 cut(s) 129, 211
BstMAI GTCTC 2 cut(s) 74, 185
BstMBI GATC 2 cut(s) 126, 208
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 49, 110
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 161
BtrI CACGTC 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 169
Cfr10I RCCGGY 2 cut(s) 161, 167
Cfr13I GGNCC 1 cut(s) 159
CviAII CATG 1 cut(s) 222
CviJI RGCY 3 cut(s) 86, 161, 234
CviKI_1 RGCY 3 cut(s) 86, 161, 234
DpnI GATC 2 cut(s) 128, 210
DpnII GATC 2 cut(s) 126, 208
EciI GGCGGA 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 1 cut(s) 225
FaiI YATR 1 cut(s) 223
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 221
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 161
HapII CCGG 3 cut(s) 50, 162, 168
Hin1II CATG 1 cut(s) 225
HpaII CCGG 3 cut(s) 50, 162, 168
Hpy188III TCNNGA 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 225
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 126, 208
LpnPI CCDG 5 cut(s) 63, 97, 124, 175, 181
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 57
MalI GATC 2 cut(s) 128, 210
MboI GATC 2 cut(s) 126, 208
MboII GAAGA 2 cut(s) 85, 99
MluCI AATT 1 cut(s) 92
MnlI CCTC 2 cut(s) 150, 224
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 148
MspI CCGG 3 cut(s) 50, 162, 168
MspR9I CCNGG 2 cut(s) 51, 112
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 51
NdeII GATC 2 cut(s) 126, 208
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 1 cut(s) 225
NlaIV GGNNCC 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 148
PkrI GCNGC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 159
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 126, 208
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 51, 112
SetI ASST 1 cut(s) 60
SfaNI GCATC 1 cut(s) 14
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 68, 171
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 49, 110
TaiI ACGT 1 cut(s) 60
TasI AATT 1 cut(s) 92
TscAI CASTG 1 cut(s) 159
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 148
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.