pycom14g12790

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013671
Physical Location & Seq
Forward (+)
15812979 .. 15814584
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGGAAACGCTAATGAATCTCCTCCAGGAGACAGCTCTAAATCATGTGACAAGTTCCGGCCTTGCTGGAAATGGATTTGGGGCTACCCGTGAGATGAGCATCCGGAAGCTCATCTGGGTCGTCACACGGATCCACATTCAAGTACAGAGATACAACTCATGGGGAGATGTGGTCGAAATCGATACTTGGGTGGATGCAGCGGGCAAAAACGGAATGCGAAGAGATTGGATTATCCGAGACTACCAGAGTCAAGAAATTATTACCAGAGCTACAAGCACTTGGGTGATCATGAACAGAGAGACAAGAAGGCTGTCCAAGATACCTGACCAAGTGAGGCAAGAGGTGTTACCATTCTACCTAAACAGATTTGCAATTGCTAAAGAGAAAAATGACAGCGAGAAAATCGACAAGCTCACCGATGATACTGCAGAGAGGATCACATCAGGTTTAGCACCAAGATGGAGTGACATGGATGCCAACCAACATGTTAATAATGTGAAATACATTGGATGGATTTTGGAGAGTGTGCCCATCAATGTATTGGGAGATTATGATCTCACAAGCATGACACTGGAGTATAGACGTGAATGTAGACAATCAAATTTGCTAGAGTCTCTAACAAGTACAACATCAAGTTTGGCTGATGACTCCAACTGCAAGAACAACTCCATCAATCGGAGACCAGACCTAGAATACACACACCTTCTCCGGATGCAGGCCGATAAGGCAGAGATAGTACGAGCACGAACGGAATGGAATACGAAACAAAAGGATAAGCTGCATTGA

Protein Analysis

262

Amino Acids

30.28

Weight (kDa)

6.98

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 1 - 114 3.2e-31 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 142 - 253 2.8e-24 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08660
malus_domestica MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica Prupe.5G148400_v2.0.a1
pyrus_communis pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis RchiOBHm_Chr7g0189721
rosa_laevigata RLG00000004595
rosa_multiflora Rmu_sc0001924.1_g000022
rosa_roxburghii Rroxscaffold_3G00265230
rosa_rugosa Rorug06G0499300
rosa_samantha Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana Rw7G009050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 592
AccIII TCCGGA 2 cut(s) 102, 708
AciI CCGC 1 cut(s) 200
AclWI GGATC 3 cut(s) 124, 137, 443
AcsI RAATTY 1 cut(s) 601
AfaI GTAC 3 cut(s) 144, 625, 738
AfiI CCNNNNNNNGG 2 cut(s) 675, 715
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 1 cut(s) 140
AjiI CACGTC 1 cut(s) 584
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 5 cut(s) 35, 109, 269, 412, 778
AluI AGCT 5 cut(s) 35, 109, 269, 412, 778
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 5 cut(s) 23, 231, 293, 618, 673
AlwI GGATC 3 cut(s) 124, 137, 443
Aor13HI TCCGGA 2 cut(s) 102, 708
AoxI GGCC 2 cut(s) 58, 717
ApeKI GCWGC 2 cut(s) 197, 778
ApoI RAATTY 1 cut(s) 601
AsuHPI GGTGA 2 cut(s) 295, 406
BaeGI GKGCMC 1 cut(s) 531
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BamHI GGATCC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 2 cut(s) 209, 765
BccI CCATC 4 cut(s) 453, 504, 539, 677
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 5 cut(s) 23, 231, 293, 618, 673
BfaI CTAG 2 cut(s) 608, 689
BfmI CTRYAG 1 cut(s) 426
BglI GCCNNNNNGGC 1 cut(s) 725
BisI GCNGC 2 cut(s) 198, 779
BlsI GCNGC 2 cut(s) 199, 780
Bme1390I CCNGG 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 4 cut(s) 108, 184, 463, 702
BpmI CTGGAG 2 cut(s) 8, 593
Bsa29I ATCGAT 1 cut(s) 180
BsaBI GATNNNNATC 2 cut(s) 98, 552
BsaI GGTCTC 1 cut(s) 673
BsaWI WCCGGW 2 cut(s) 102, 708
BsaXI ACNNNNNCTCC 4 cut(s) 156, 186, 690, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 675, 715
Bse1I ACTGG 1 cut(s) 576
Bse8I GATNNNNATC 2 cut(s) 98, 552
BseAI TCCGGA 2 cut(s) 102, 708
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 180
BseGI GGATG 5 cut(s) 99, 199, 478, 515, 717
BseJI GATNNNNATC 2 cut(s) 98, 552
BseLI CCNNNNNNNGG 2 cut(s) 675, 715
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 2 cut(s) 209, 765
BshFI GGCC 2 cut(s) 60, 719
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 745
BsiSI CCGG 3 cut(s) 57, 103, 709
BslI CCNNNNNNNGG 2 cut(s) 675, 715
BsmAI GTCTC 5 cut(s) 23, 231, 293, 618, 673
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 2 cut(s) 60, 719
Bso31I GGTCTC 1 cut(s) 673
Bsp1286I GDGCHC 2 cut(s) 531, 745
Bsp13I TCCGGA 2 cut(s) 102, 708
Bsp143I GATC 4 cut(s) 129, 285, 435, 553
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 60, 719
BspDI ATCGAT 1 cut(s) 180
BspEI TCCGGA 2 cut(s) 102, 708
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 131
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 3 cut(s) 124, 137, 443
BspTNI GGTCTC 1 cut(s) 673
BsrI ACTGG 1 cut(s) 576
BssMI GATC 4 cut(s) 129, 285, 435, 553
Bst2UI CCWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 202, 717
BstF5I GGATG 5 cut(s) 99, 199, 478, 515, 717
BstKTI GATC 4 cut(s) 132, 288, 438, 556
BstMAI GTCTC 5 cut(s) 23, 231, 293, 618, 673
BstMBI GATC 4 cut(s) 129, 285, 435, 553
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 209, 765
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 2 cut(s) 60, 719
BsuTUI ATCGAT 1 cut(s) 180
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 5 cut(s) 99, 199, 478, 515, 717
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 2 cut(s) 202, 717
CciI TCATGA 1 cut(s) 288
ClaI ATCGAT 1 cut(s) 180
Csp6I GTAC 3 cut(s) 143, 624, 737
CviAII CATG 6 cut(s) 44, 159, 289, 469, 485, 565
CviQI GTAC 3 cut(s) 143, 624, 737
DpnI GATC 4 cut(s) 131, 287, 437, 555
DpnII GATC 4 cut(s) 129, 285, 435, 553
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 6 cut(s) 47, 162, 292, 472, 488, 568
FaiI YATR 8 cut(s) 45, 160, 290, 470, 486, 552, 566, 579
FatI CATG 6 cut(s) 43, 158, 288, 468, 484, 564
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 285
FblI GTMKAC 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 198, 779
FokI GGATG 5 cut(s) 86, 206, 485, 522, 724
Fsp4HI GCNGC 2 cut(s) 198, 779
FspBI CTAG 2 cut(s) 608, 689
GluI GCNGC 2 cut(s) 198, 779
GsuI CTGGAG 2 cut(s) 8, 593
HaeIII GGCC 2 cut(s) 60, 719
HapII CCGG 3 cut(s) 57, 103, 709
Hin1II CATG 6 cut(s) 47, 162, 292, 472, 488, 568
HinfI GANTC 4 cut(s) 16, 247, 611, 647
HpaII CCGG 3 cut(s) 57, 103, 709
HphI GGTGA 2 cut(s) 295, 406
Hpy166II GTNNAC 1 cut(s) 593
Hpy188I TCNGA 2 cut(s) 236, 678
Hpy188III TCNNGA 4 cut(s) 103, 251, 289, 709
Hpy8I GTNNAC 1 cut(s) 593
HpyAV CCTTC 2 cut(s) 300, 713
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 6 cut(s) 197, 371, 428, 657, 715, 781
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 6 cut(s) 47, 162, 292, 472, 488, 568
Kpn2I TCCGGA 2 cut(s) 102, 708
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 4 cut(s) 129, 285, 435, 553
Lsp1109I GCAGC 2 cut(s) 209, 765
LweI GCATC 4 cut(s) 108, 184, 463, 702
MaeI CTAG 2 cut(s) 608, 689
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 4 cut(s) 46, 121, 345, 464
MalI GATC 4 cut(s) 131, 287, 437, 555
MboI GATC 4 cut(s) 129, 285, 435, 553
MboII GAAGA 1 cut(s) 231
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 531, 745
MluCI AATT 3 cut(s) 255, 372, 601
MlyI GAGTC 3 cut(s) 256, 620, 641
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 4 cut(s) 32, 327, 334, 426
MroI TCCGGA 2 cut(s) 102, 708
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 3 cut(s) 281, 457, 563
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 3 cut(s) 57, 103, 709
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeII GATC 4 cut(s) 129, 285, 435, 553
NlaIII CATG 6 cut(s) 47, 162, 292, 472, 488, 568
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 3 cut(s) 46, 121, 464
NspI RCATGY 1 cut(s) 488
OliI CACNNNNGTG 1 cut(s) 281
PagI TCATGA 1 cut(s) 288
PciI ACATGT 1 cut(s) 484
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 2 cut(s) 199, 780
PleI GAGTC 3 cut(s) 255, 619, 641
PpsI GAGTC 3 cut(s) 255, 619, 641
PscI ACATGT 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 3 cut(s) 144, 625, 738
RsaNI GTAC 3 cut(s) 143, 624, 737
RseI CAYNNNNRTG 3 cut(s) 281, 457, 563
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 2 cut(s) 198, 779
Sau3AI GATC 4 cut(s) 129, 285, 435, 553
SchI GAGTC 3 cut(s) 256, 620, 641
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 531, 745
SfaNI GCATC 4 cut(s) 108, 184, 463, 702
SfcI CTRYAG 1 cut(s) 426
SmiMI CAYNNNNRTG 3 cut(s) 281, 457, 563
Sse9I AATT 3 cut(s) 255, 372, 601
SsiI CCGC 1 cut(s) 200
SspMI CTAG 2 cut(s) 608, 689
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 586
TaqI TCGA 3 cut(s) 174, 180, 405
TasI AATT 3 cut(s) 255, 372, 601
TatI WGTACW 2 cut(s) 142, 623
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 3 cut(s) 46, 121, 464
TseI GCWGC 2 cut(s) 197, 778
Tsp45I GTSAC 3 cut(s) 46, 121, 464
TspDTI ATGAA 2 cut(s) 29, 305
TspGWI ACGGA 3 cut(s) 142, 225, 764
TspRI CASTG 1 cut(s) 576
XapI RAATTY 1 cut(s) 601
XceI RCATGY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmiI GTMKAC 1 cut(s) 592
XspI CTAG 2 cut(s) 608, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.