Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015101

Physical Location & Seq

Genomic Coordinates Reverse (-)

16554165 .. 16556234

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTTCTTCCTCTTCTCCACTCTTCACATCTTGGCAGATTACCCTCATTACCCTCACCACCATCTCCTTCCTCTCCTCCTCCTCCTTCCCCGCCTCCGCTGTAGCAACAAAACAAAACCCTACATCGCCCTTCAAGAAAATCTACGCCTTTGGTGACTCATTCACAGACACAGGCAACACAAGATCCATCACAGGCCCTAGCGGCTTCGGCCACGTCTCAAACTCTCCCTACGGCATCACCTTCTTTCACCGCCCCACCAACCGCTACTCCGACGGCCGCCTAGTCATTGACTTCGTCACCGAGTCACTCTCCTTGCCCTACTTGCCACCCTACCGTGTCGTTTCGAGCAATGCCTCAGCAGACTCAACTCACGGAGTTAACTTCGCCGTCGCGGGTTCCACTGCCATAGAGCACGAGTTCTTTGTGAAGAACAACCTCAGCCTTGCCATCACTCCTCAGTCTATCCTGTCTCAGCTGCTTTGGTTCAACAAGTTCTTGGACAAAGTTGGAGGACCGGAATGCAAATTTGATGATGCACTTTTTTGGGTTGGAGAAATCGGAGTCAATGATTATGCTTACACAATTGGATCTGCTGTGCCAGGTGATACAATTCAGAAGCTTGGGGTCAGTAGGGTTACTAGCTTTCTGCAGGCACTGTTAAAGAAGGGTGCCAAATATGTTGTTGTCCAAGGTCTGCCACTTTCAGGCTGCTTGCCGTTGGCGATGACGTTAGCTCCGGAAGACGACAGAGACAGCATCGAATGTGTCAAGAGTGTCAACAACCAAACCTACAGCCATAACCTTGTGCTCCAAGCAAAGTTGCAAGAACTCAGGAAACAGTTTCCCCATGCTGTCATAACCTATGCTGACTACTGGAATGCCCATCTCGCAGTCATGAAGAATCCGAGCCAGTACGGTTTCACGGAGAGCTTCAAGGCCTGCTGTGGGAAGAGCGATGACCCCTACAACTTCGACGTGTTTGCCACTTGCGGCACGCCTTCTGCCACCGCCTGTAAAAGCCCGTCCCAGTACATCAATTGGGATGGAGTTCATCTCACTGAAGCCATGTACAAGGTGCTTTCTGATATGTTCCTAAAAGGCAACGCCACTCACCCTCCTTTCAGTTCCTTGTTGGACATGAAACTGCATAACGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0008126 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016788 GO:0019752 GO:0032787 GO:0034338 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0052689 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

387

Amino Acids

42.16

Weight (kDa)

6.78

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48460
fragaria_vesca	FvH4_5g07260
malus_domestica	MD06G1157800.v1.1
prunus_persica	Prupe.5G157800_v2.0.a1 Prupe.I001600_v2.0.a1
pyrus_communis	pycom06g14090 pycom14g13710
rosa_chinensis	RchiOBHm_Chr7g0191371
rosa_laevigata	RLG00000004461
rosa_multiflora	Rmu_co8465791.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438320
rosa_rugosa	Rorug06G0510300
rosa_samantha	Rh7AG117600 Rh7BG119700 Rh7CG122700 Rh7DG120800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	671
AccII	CGCG	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	739
AciI	CCGC	9 cut(s)	93, 99, 204, 253, 265, 280, 395, 993, 1011
AclWI	GGATC	2 cut(s)	180, 598
AcoI	YGGCCR	2 cut(s)	211, 277
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	1083
AfaI	GTAC	3 cut(s)	917, 1034, 1073
AfiI	CCNNNNNNNGG	2 cut(s)	707, 948
AflIII	ACRYGT	1 cut(s)	978
AgsI	TTSAA	3 cut(s)	136, 490, 937
AjiI	CACGTC	2 cut(s)	217, 979
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	5 cut(s)	478, 622, 645, 737, 933
AluI	AGCT	5 cut(s)	478, 622, 645, 737, 933
Alw21I	GWGCWC	2 cut(s)	417, 813
Alw26I	GTCTC	3 cut(s)	223, 477, 747
AlwI	GGATC	2 cut(s)	180, 598
AlwNI	CAGNNNCTG	1 cut(s)	658
Aor13HI	TCCGGA	1 cut(s)	739
AoxI	GGCC	4 cut(s)	196, 211, 277, 939
ApeKI	GCWGC	2 cut(s)	478, 711
ApoI	RAATTY	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	197, 515
AsuHPI	GGTGA	7 cut(s)	49, 167, 232, 242, 292, 617, 1106
AvaII	GGWCC	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	671
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	2 cut(s)	417, 813
BbvCI	CCTCAGC	2 cut(s)	358, 440
BbvI	GCAGC	2 cut(s)	465, 698
BccI	CCATC	5 cut(s)	71, 197, 458, 894, 1040
BceAI	ACGGC	4 cut(s)	250, 292, 374, 703
BcgI	CGANNNNNNTGC	2 cut(s)	965, 999
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	3 cut(s)	223, 477, 747
BfaI	CTAG	3 cut(s)	201, 284, 642
BfmI	CTRYAG	3 cut(s)	102, 650, 793
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	5 cut(s)	205, 280, 479, 712, 994
BlsI	GCNGC	5 cut(s)	206, 281, 480, 713, 995
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	515
BmgBI	CACGTC	2 cut(s)	217, 979
BmgT120I	GGNCC	2 cut(s)	197, 515
BmiI	GGNNCC	2 cut(s)	400, 673
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	1024
BmsI	GCATC	3 cut(s)	246, 526, 768
BmuI	ACTGGG	1 cut(s)	1024
BpiI	GAAGAC	1 cut(s)	750
BplI	GAGNNNNNCTC	4 cut(s)	296, 328, 1041, 1073
Bpu10I	CCTNAGC	2 cut(s)	358, 440
BsaJI	CCNNGG	1 cut(s)	691
BsaWI	WCCGGW	2 cut(s)	517, 739
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 721, 751, 1102, 1132
Bsc4I	CCNNNNNNNGG	2 cut(s)	707, 948
Bse1I	ACTGG	3 cut(s)	881, 913, 1030
Bse3DI	GCAATG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	739
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	1 cut(s)	1051
BseLI	CCNNNNNNNGG	2 cut(s)	707, 948
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	5 cut(s)	372, 454, 473, 488, 847
BseNI	ACTGG	3 cut(s)	881, 913, 1030
BseRI	GAGGAG	4 cut(s)	67, 70, 73, 447
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	465, 698
Bsh1236I	CGCG	1 cut(s)	395
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	4 cut(s)	198, 213, 279, 941
BshNI	GGYRCC	1 cut(s)	671
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	417, 813
BsiSI	CCGG	2 cut(s)	518, 740
BslFI	GGGAC	1 cut(s)	1012
BslI	CCNNNNNNNGG	2 cut(s)	707, 948
BsmAI	GTCTC	3 cut(s)	223, 477, 747
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	1012
BsmI	GAATGC	2 cut(s)	527, 886
BsnI	GGCC	4 cut(s)	198, 213, 279, 941
Bsp1286I	GDGCHC	2 cut(s)	417, 813
Bsp13I	TCCGGA	1 cut(s)	739
Bsp1407I	TGTACA	1 cut(s)	1071
Bsp143I	GATC	2 cut(s)	185, 590
BspACI	CCGC	9 cut(s)	93, 99, 204, 253, 265, 280, 395, 993, 1011
BspANI	GGCC	4 cut(s)	198, 213, 279, 941
BspCNI	CTCAG	5 cut(s)	371, 453, 472, 487, 846
BspEI	TCCGGA	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	395
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	2 cut(s)	400, 673
BspMAI	CTGCAG	1 cut(s)	654
BspPI	GGATC	2 cut(s)	180, 598
BspQI	GCTCTTC	1 cut(s)	947
BspT107I	GGYRCC	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	358
BsrGI	TGTACA	1 cut(s)	1071
BsrI	ACTGG	3 cut(s)	881, 913, 1030
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	2 cut(s)	185, 590
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	691
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	4 cut(s)	338, 660, 843, 920
Bst6I	CTCTTC	3 cut(s)	19, 29, 947
BstAUI	TGTACA	1 cut(s)	1071
BstC8I	GCNNGC	4 cut(s)	654, 716, 943, 998
BstDEI	CTNAG	5 cut(s)	358, 440, 459, 474, 833
BstF5I	GGATG	1 cut(s)	1051
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	2 cut(s)	188, 593
BstMAI	GTCTC	3 cut(s)	223, 477, 747
BstMBI	GATC	2 cut(s)	185, 590
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 210, 325, 890
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	3 cut(s)	102, 650, 793
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	465, 698
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	2 cut(s)	185, 590
BstYI	RGATCY	2 cut(s)	185, 590
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	4 cut(s)	198, 213, 279, 941
BtgZI	GCGATG	3 cut(s)	111, 740, 972
BtrI	CACGTC	2 cut(s)	217, 979
BtsCI	GGATG	1 cut(s)	1051
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	402, 656, 1059
Cac8I	GCNNGC	4 cut(s)	654, 716, 943, 998
CaiI	CAGNNNCTG	1 cut(s)	658
CciI	TCATGA	1 cut(s)	897
Cfr13I	GGNCC	2 cut(s)	197, 515
Csp6I	GTAC	3 cut(s)	916, 1033, 1072
CviAII	CATG	4 cut(s)	851, 898, 1069, 1141
CviQI	GTAC	3 cut(s)	916, 1033, 1072
DdeI	CTNAG	5 cut(s)	358, 440, 459, 474, 833
DpnI	GATC	2 cut(s)	187, 592
DpnII	GATC	2 cut(s)	185, 590
EaeI	YGGCCR	2 cut(s)	211, 277
EagI	CGGCCG	1 cut(s)	277
Eam1104I	CTCTTC	3 cut(s)	19, 29, 947
EarI	CTCTTC	3 cut(s)	19, 29, 947
EclXI	CGGCCG	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	691
Eco147I	AGGCCT	1 cut(s)	941
Eco47I	GGWCC	1 cut(s)	515
Eco52I	CGGCCG	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	1083
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	691
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	4 cut(s)	854, 901, 1072, 1144
FaqI	GGGAC	1 cut(s)	1012
FatI	CATG	4 cut(s)	850, 897, 1068, 1140
FauI	CCCGC	2 cut(s)	100, 388
Fnu4HI	GCNGC	5 cut(s)	205, 280, 479, 712, 994
FokI	GGATG	1 cut(s)	1058
Fsp4HI	GCNGC	5 cut(s)	205, 280, 479, 712, 994
FspBI	CTAG	3 cut(s)	201, 284, 642
GluI	GCNGC	5 cut(s)	205, 280, 479, 712, 994
HaeIII	GGCC	4 cut(s)	198, 213, 279, 941
HapII	CCGG	2 cut(s)	518, 740
Hin1II	CATG	4 cut(s)	854, 901, 1072, 1144
HincII	GTYRAC	2 cut(s)	382, 781
HindII	GTYRAC	2 cut(s)	382, 781
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	5 cut(s)	158, 305, 365, 564, 904
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	2 cut(s)	518, 740
HphI	GGTGA	7 cut(s)	49, 167, 232, 242, 292, 617, 1106
Hpy166II	GTNNAC	2 cut(s)	382, 781
Hpy188I	TCNGA	5 cut(s)	274, 563, 618, 909, 1087
Hpy188III	TCNNGA	5 cut(s)	136, 740, 772, 835, 898
Hpy8I	GTNNAC	2 cut(s)	382, 781
Hpy99I	CGWCG	3 cut(s)	278, 395, 980
HpyAV	CCTTC	6 cut(s)	79, 97, 142, 253, 661, 1011
HpyCH4III	ACNGT	4 cut(s)	338, 660, 843, 920
HpyCH4IV	ACGT	3 cut(s)	216, 731, 978
HpyCH4V	TGCA	5 cut(s)	525, 539, 652, 826, 1150
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 210, 325, 890
HpyF3I	CTNAG	5 cut(s)	358, 440, 459, 474, 833
HpySE526I	ACGT	3 cut(s)	216, 731, 978
Hsp92II	CATG	4 cut(s)	854, 901, 1072, 1144
Kpn2I	TCCGGA	1 cut(s)	739
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	185, 590
LguI	GCTCTTC	1 cut(s)	947
LmnI	GCTCC	2 cut(s)	742, 816
Lsp1109I	GCAGC	2 cut(s)	465, 698
LweI	GCATC	3 cut(s)	246, 526, 768
MaeI	CTAG	3 cut(s)	201, 284, 642
MaeII	ACGT	3 cut(s)	216, 731, 978
MaeIII	GTNAC	4 cut(s)	155, 298, 306, 637
MalI	GATC	2 cut(s)	187, 592
MboI	GATC	2 cut(s)	185, 590
MboII	GAAGA	6 cut(s)	6, 16, 442, 755, 913, 964
MfeI	CAATTG	2 cut(s)	585, 1039
MflI	RGATCY	2 cut(s)	185, 590
MhlI	GDGCHC	2 cut(s)	417, 813
MluCI	AATT	4 cut(s)	527, 585, 612, 1039
MlyI	GAGTC	4 cut(s)	152, 314, 359, 573
MmeI	TCCRAC	4 cut(s)	297, 490, 532, 1116
MroI	TCCGGA	1 cut(s)	739
MseI	TTAA	2 cut(s)	381, 662
MspA1I	CMGCKG	2 cut(s)	101, 478
MspI	CCGG	2 cut(s)	518, 740
MspR9I	CCNGG	1 cut(s)	603
MunI	CAATTG	2 cut(s)	585, 1039
Mva1269I	GAATGC	2 cut(s)	527, 886
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	4 cut(s)	204, 210, 325, 890
NdeII	GATC	2 cut(s)	185, 590
NlaIII	CATG	4 cut(s)	854, 901, 1072, 1144
NlaIV	GGNNCC	2 cut(s)	400, 673
NmuCI	GTSAC	3 cut(s)	155, 298, 306
PagI	TCATGA	1 cut(s)	897
PceI	AGGCCT	1 cut(s)	941
PciSI	GCTCTTC	1 cut(s)	947
PctI	GAATGC	2 cut(s)	527, 886
PfeI	GAWTC	1 cut(s)	904
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	5 cut(s)	206, 281, 480, 713, 995
PleI	GAGTC	4 cut(s)	152, 313, 359, 572
PpsI	GAGTC	4 cut(s)	152, 313, 359, 572
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	400, 673
PspPI	GGNCC	2 cut(s)	197, 515
PstI	CTGCAG	1 cut(s)	654
PstNI	CAGNNNCTG	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	185, 590
PsyI	GACNNNGTC	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	3 cut(s)	917, 1034, 1073
RsaNI	GTAC	3 cut(s)	916, 1033, 1072
SapI	GCTCTTC	1 cut(s)	947
SaqAI	TTAA	2 cut(s)	381, 662
SatI	GCNGC	5 cut(s)	205, 280, 479, 712, 994
Sau3AI	GATC	2 cut(s)	185, 590
Sau96I	GGNCC	2 cut(s)	197, 515
SchI	GAGTC	4 cut(s)	152, 314, 359, 573
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	2 cut(s)	417, 813
SfaNI	GCATC	3 cut(s)	246, 526, 768
SfcI	CTRYAG	3 cut(s)	102, 650, 793
SinI	GGWCC	1 cut(s)	515
Sse9I	AATT	4 cut(s)	527, 585, 612, 1039
SseBI	AGGCCT	1 cut(s)	941
SsiI	CCGC	9 cut(s)	93, 99, 204, 253, 265, 280, 395, 993, 1011
SspMI	CTAG	3 cut(s)	201, 284, 642
StuI	AGGCCT	1 cut(s)	941
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	1 cut(s)	691
TaaI	ACNGT	4 cut(s)	338, 660, 843, 920
TaiI	ACGT	3 cut(s)	219, 734, 981
TaqI	TCGA	3 cut(s)	347, 762, 975
TasI	AATT	4 cut(s)	527, 585, 612, 1039
TatI	WGTACW	2 cut(s)	1032, 1071
TauI	GCSGC	3 cut(s)	207, 282, 996
TfiI	GAWTC	1 cut(s)	904
Tru1I	TTAA	2 cut(s)	381, 662
Tru9I	TTAA	2 cut(s)	381, 662
TscAI	CASTG	3 cut(s)	409, 663, 1066
TseFI	GTSAC	3 cut(s)	155, 298, 306
TseI	GCWGC	2 cut(s)	478, 711
Tsp45I	GTSAC	3 cut(s)	155, 298, 306
TspDTI	ATGAA	3 cut(s)	914, 1043, 1157
TspGWI	ACGGA	2 cut(s)	390, 941
TspRI	CASTG	3 cut(s)	409, 663, 1066
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	527
XspI	CTAG	3 cut(s)	201, 284, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.