Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

62506548 .. 62509283

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0510300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCTGAGGAAGAGGACCAGGTCAACTCAGAAGGATCAAGATCAACACCAAATGGGGCATCTGCCAATTTCTAATGCTGGGTCTGAGTCACATTTCGGGTCTGATGTTCTTGGACCAAATCTGAAAAGCAACTCTTTTTTTACTGTCCCTGGTCTGTTTGTGGGGTTGAGTCCTATAGGTTTAACAGATTCTGATTCAGTTAGGAGCCCAACTTCGCCTCTAGATTTCAGGGTGTTTTCGAATCTAGGCAGCCCCTTTAGGTCCCCAGGATCACCTCTTGATGGGCATAAGAGGAGCTGGGGCAGTAGTAAAGTAGGCTTAAGCATCATCGACTCTCTTGATGATGATGTCAAGTTTTCTGGGAAAGTTCCCAGATCATCAGAGAGTAAGAACATTCTTTTTGGACCTGGGATGAGGACTAAAACCCGAGATTCTCAATCCAATACCAATTCTATTGGGTCACCTAGATCTCTGCCTAAGAATTATGCAATTTTCCCTCATTCCAAAGTCAAGTCTCCTTTACAAGAGAGTAGCTCTGATGTTGTTTTTGAAATTGGAGAAACACCATCAGAACCTGAGTCATTTGGAAAAATAAGGTCTTGCTCACTGGATTCTGCTAGGACTTTTTCAACCCTATCAGGTTTAAGCAAGCTTAACCCCAATTCCACTACTGGAAATTTTTGCTTGGAGAATTTAAGCAACCCACAATTTATTGGAGGAAGCCCCAACTCAACCACCCAAATGACTGTTGGATCCATTGGTTCTGGAATTGGGTTTGTTGGGTCTCTCGCAGCGAGTGAGATTGAGCTTTCTGAGGATTATACTTGTGTAATTTCTCATGGTGCCAATCCCAAAACAACTCATATCTTTGGTGACTGCGTTTTGGGATGCCACTCTGAAGATTTGAGCAATTTTGGTAAGAATGAGAAGATGGAAATTGGATCACCTCAGCTGGCTACGAGCTTGGGGAGTTTTGTTCAGTACCCCTCAAACAATTTCCTGAGCTTCTGCTACTACTGTAACAAAGAACTGGAAGAGGGGAAAGACATTTTCATATACAGGGGTGAGAAAGCATTTTGCAGTTTGAGTTGCCGCTCTGTGGAGATTTTGAATGATGAGGAATTGGAGCAGTGCGATGACGAATCTTCTGAAAAGCCTATTGAGTCAGATGATGGCAAGGAACTTTTTTTCGAAACTGGCCTCATTGCTGATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0008126 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016788 GO:0019752 GO:0032787 GO:0034338 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0052689 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

405

Amino Acids

43.85

Weight (kDa)

5.17

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	327 - 374	8.2e-21	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	842
AccBSI	CCGCTC	1 cut(s)	1095
AciI	CCGC	1 cut(s)	1093
AclWI	GGATC	5 cut(s)	42, 277, 747, 760, 949
AcsI	RAATTY	2 cut(s)	676, 691
AcuI	CTGAAG	1 cut(s)	918
AfaI	GTAC	1 cut(s)	983
AfiI	CCNNNNNNNGG	2 cut(s)	281, 1099
AflII	CTTAAG	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	551, 630, 1111
AjnI	CCWGG	4 cut(s)	17, 148, 265, 406
AluBI	AGCT	7 cut(s)	297, 534, 652, 808, 952, 963, 1005
AluI	AGCT	7 cut(s)	297, 534, 652, 808, 952, 963, 1005
Alw26I	GTCTC	2 cut(s)	519, 789
AlwI	GGATC	5 cut(s)	42, 277, 747, 760, 949
AlwNI	CAGNNNCTG	2 cut(s)	191, 575
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	1 cut(s)	1198
ApeKI	GCWGC	2 cut(s)	249, 791
ApoI	RAATTY	2 cut(s)	676, 691
AspS9I	GGNCC	4 cut(s)	15, 113, 261, 404
AsuHPI	GGTGA	5 cut(s)	264, 453, 884, 936, 1076
AsuII	TTCGAA	2 cut(s)	239, 1191
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	4 cut(s)	15, 113, 261, 404
BamHI	GGATCC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	842
BanII	GRGCYC	1 cut(s)	209
BbvCI	CCTCAGC	2 cut(s)	5, 948
BbvI	GCAGC	2 cut(s)	261, 803
BccI	CCATC	4 cut(s)	275, 574, 925, 1166
BciT130I	CCWGG	4 cut(s)	19, 150, 267, 408
BcoDI	GTCTC	2 cut(s)	519, 789
BfaI	CTAG	4 cut(s)	221, 245, 465, 618
BfmI	CTRYAG	1 cut(s)	174
BfrI	CTTAAG	1 cut(s)	319
BglII	AGATCT	1 cut(s)	467
BisI	GCNGC	3 cut(s)	250, 792, 1093
BlsI	GCNGC	3 cut(s)	251, 793, 1094
Bme1390I	CCNGG	4 cut(s)	19, 150, 267, 408
Bme18I	GGWCC	4 cut(s)	15, 113, 261, 404
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	4 cut(s)	15, 113, 261, 404
BmiI	GGNNCC	4 cut(s)	206, 263, 754, 844
BmrFI	CCNGG	4 cut(s)	19, 150, 267, 408
BmsI	GCATC	3 cut(s)	67, 333, 878
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
Bpu10I	CCTNAGC	3 cut(s)	5, 948, 1001
Bpu14I	TTCGAA	2 cut(s)	239, 1191
BsaBI	GATNNNNATC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	148, 265, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 1099
Bse1I	ACTGG	4 cut(s)	612, 676, 1035, 1201
Bse3DI	GCAATG	1 cut(s)	1203
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	4 cut(s)	19, 150, 267, 408
BseDI	CCNNGG	3 cut(s)	148, 265, 407
BseGI	GGATG	2 cut(s)	417, 893
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	281, 1099
BseMI	GCAATG	1 cut(s)	1203
BseMII	CTCAG	6 cut(s)	41, 75, 567, 804, 962, 992
BseNI	ACTGG	4 cut(s)	612, 676, 1035, 1201
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	261, 803
BseYI	CCCAGC	2 cut(s)	77, 297
BshFI	GGCC	1 cut(s)	1200
BshNI	GGYRCC	1 cut(s)	842
BsiHKCI	CYCGRG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	131, 247
BslI	CCNNNNNNNGG	2 cut(s)	281, 1099
BsmAI	GTCTC	2 cut(s)	519, 789
BsmFI	GGGAC	2 cut(s)	131, 247
BsnI	GGCC	1 cut(s)	1200
Bso31I	GGTCTC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	426
Bsp119I	TTCGAA	2 cut(s)	239, 1191
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	7 cut(s)	34, 40, 269, 374, 467, 752, 941
BspACI	CCGC	1 cut(s)	1093
BspANI	GGCC	1 cut(s)	1200
BspCNI	CTCAG	6 cut(s)	40, 76, 568, 805, 961, 993
BspLI	GGNNCC	4 cut(s)	206, 263, 754, 844
BspPI	GGATC	5 cut(s)	42, 277, 747, 760, 949
BspT104I	TTCGAA	2 cut(s)	239, 1191
BspT107I	GGYRCC	1 cut(s)	842
BspTI	CTTAAG	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	789
BsrBI	CCGCTC	1 cut(s)	1095
BsrDI	GCAATG	1 cut(s)	1203
BsrI	ACTGG	4 cut(s)	612, 676, 1035, 1201
BssECI	CCNNGG	3 cut(s)	148, 265, 407
BssMI	GATC	7 cut(s)	34, 40, 269, 374, 467, 752, 941
Bst2UI	CCWGG	4 cut(s)	19, 150, 267, 408
Bst4CI	ACNGT	3 cut(s)	145, 748, 1019
Bst6I	CTCTTC	2 cut(s)	5, 1029
BstAFI	CTTAAG	1 cut(s)	319
BstBI	TTCGAA	2 cut(s)	239, 1191
BstC8I	GCNNGC	2 cut(s)	650, 954
BstDEI	CTNAG	8 cut(s)	5, 27, 84, 477, 576, 813, 948, 1001
BstEII	GGTNACC	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	417, 893
BstKTI	GATC	7 cut(s)	37, 43, 272, 377, 470, 755, 944
BstMAI	GTCTC	2 cut(s)	519, 789
BstMBI	GATC	7 cut(s)	34, 40, 269, 374, 467, 752, 941
BstNI	CCWGG	4 cut(s)	19, 150, 267, 408
BstPI	GGTNACC	1 cut(s)	459
BstSCI	CCNGG	4 cut(s)	17, 148, 265, 406
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	261, 803
BstX2I	RGATCY	2 cut(s)	467, 752
BstYI	RGATCY	2 cut(s)	467, 752
BsuRI	GGCC	1 cut(s)	1200
BtgZI	GCGATG	1 cut(s)	1149
BtsCI	GGATG	2 cut(s)	417, 893
BtsI	GCAGTG	1 cut(s)	1136
BtsIMutI	CAGTG	2 cut(s)	605, 1136
Cac8I	GCNNGC	2 cut(s)	650, 954
CaiI	CAGNNNCTG	2 cut(s)	191, 575
Cfr13I	GGNCC	4 cut(s)	15, 113, 261, 404
CsiI	ACCWGGT	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	982
CviAII	CATG	1 cut(s)	839
CviQI	GTAC	1 cut(s)	982
DdeI	CTNAG	8 cut(s)	5, 27, 84, 477, 576, 813, 948, 1001
DpnI	GATC	7 cut(s)	36, 42, 271, 376, 469, 754, 943
DpnII	GATC	7 cut(s)	34, 40, 269, 374, 467, 752, 941
Eam1104I	CTCTTC	2 cut(s)	5, 1029
EarI	CTCTTC	2 cut(s)	5, 1029
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	789
Eco47I	GGWCC	4 cut(s)	15, 113, 261, 404
Eco57I	CTGAAG	1 cut(s)	918
Eco88I	CYCGRG	1 cut(s)	426
Eco91I	GGTNACC	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	261
EcoO65I	GGTNACC	1 cut(s)	459
EcoRII	CCWGG	4 cut(s)	17, 148, 265, 406
EcoT38I	GRGCYC	1 cut(s)	209
FaeI	CATG	1 cut(s)	842
FaiI	YATR	8 cut(s)	176, 288, 486, 822, 840, 864, 1055, 1057
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	2 cut(s)	131, 247
FatI	CATG	1 cut(s)	838
Fnu4HI	GCNGC	3 cut(s)	250, 792, 1093
FokI	GGATG	2 cut(s)	424, 900
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	250, 792, 1093
FspBI	CTAG	4 cut(s)	221, 245, 465, 618
GluI	GCNGC	3 cut(s)	250, 792, 1093
GsaI	CCCAGC	2 cut(s)	81, 301
HaeIII	GGCC	1 cut(s)	1200
Hin1II	CATG	1 cut(s)	842
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	650
HphI	GGTGA	5 cut(s)	264, 453, 884, 936, 1076
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188III	TCNNGA	6 cut(s)	38, 221, 278, 338, 765, 1000
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	3 cut(s)	145, 748, 1019
HpyCH4V	TGCA	2 cut(s)	488, 1080
HpyF3I	CTNAG	8 cut(s)	5, 27, 84, 477, 576, 813, 948, 1001
Hsp92II	CATG	1 cut(s)	842
Kzo9I	GATC	7 cut(s)	34, 40, 269, 374, 467, 752, 941
LmnI	GCTCC	3 cut(s)	204, 294, 1126
Lsp1109I	GCAGC	2 cut(s)	261, 803
LweI	GCATC	3 cut(s)	67, 333, 878
MabI	ACCWGGT	1 cut(s)	17
MaeI	CTAG	4 cut(s)	221, 245, 465, 618
MaeIII	GTNAC	4 cut(s)	87, 459, 872, 1019
MalI	GATC	7 cut(s)	36, 42, 271, 376, 469, 754, 943
MbiI	CCGCTC	1 cut(s)	1095
MboI	GATC	7 cut(s)	34, 40, 269, 374, 467, 752, 941
MboII	GAAGA	5 cut(s)	22, 911, 940, 1046, 1137
MflI	RGATCY	2 cut(s)	467, 752
MhlI	GDGCHC	1 cut(s)	209
MlyI	GAGTC	5 cut(s)	95, 178, 326, 587, 1172
MmeI	TCCRAC	1 cut(s)	730
MseI	TTAA	5 cut(s)	182, 320, 644, 654, 695
MslI	CAYNNNNRTG	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	952
MspCI	CTTAAG	1 cut(s)	319
MspR9I	CCNGG	4 cut(s)	19, 150, 267, 408
MvaI	CCWGG	4 cut(s)	19, 150, 267, 408
NdeII	GATC	7 cut(s)	34, 40, 269, 374, 467, 752, 941
NlaIII	CATG	1 cut(s)	842
NlaIV	GGNNCC	4 cut(s)	206, 263, 754, 844
NmuCI	GTSAC	3 cut(s)	87, 459, 872
NspV	TTCGAA	2 cut(s)	239, 1191
PfeI	GAWTC	6 cut(s)	188, 194, 241, 431, 611, 1142
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	251, 793, 1094
PleI	GAGTC	5 cut(s)	94, 177, 326, 586, 1171
PpsI	GAGTC	5 cut(s)	94, 177, 326, 586, 1171
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	4 cut(s)	17, 148, 265, 406
PspEI	GGTNACC	1 cut(s)	459
PspFI	CCCAGC	2 cut(s)	77, 297
PspGI	CCWGG	4 cut(s)	17, 148, 265, 406
PspN4I	GGNNCC	4 cut(s)	206, 263, 754, 844
PspPI	GGNCC	4 cut(s)	15, 113, 261, 404
PspPPI	RGGWCCY	1 cut(s)	261
PstNI	CAGNNNCTG	2 cut(s)	191, 575
PsuI	RGATCY	2 cut(s)	467, 752
PsyI	GACNNNGTC	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	952
RsaI	GTAC	1 cut(s)	983
RsaNI	GTAC	1 cut(s)	982
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	5 cut(s)	182, 320, 644, 654, 695
SatI	GCNGC	3 cut(s)	250, 792, 1093
Sau3AI	GATC	7 cut(s)	34, 40, 269, 374, 467, 752, 941
Sau96I	GGNCC	4 cut(s)	15, 113, 261, 404
SchI	GAGTC	5 cut(s)	95, 178, 326, 587, 1172
ScrFI	CCNGG	4 cut(s)	19, 150, 267, 408
SduI	GDGCHC	1 cut(s)	209
SexAI	ACCWGGT	1 cut(s)	17
SfaNI	GCATC	3 cut(s)	67, 333, 878
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	2 cut(s)	239, 1191
SinI	GGWCC	4 cut(s)	15, 113, 261, 404
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
SsiI	CCGC	1 cut(s)	1093
SspMI	CTAG	4 cut(s)	221, 245, 465, 618
StyD4I	CCNGG	4 cut(s)	17, 148, 265, 406
TaaI	ACNGT	3 cut(s)	145, 748, 1019
TaqI	TCGA	3 cut(s)	239, 330, 1191
TauI	GCSGC	1 cut(s)	1095
TfiI	GAWTC	6 cut(s)	188, 194, 241, 431, 611, 1142
Tru1I	TTAA	5 cut(s)	182, 320, 644, 654, 695
Tru9I	TTAA	5 cut(s)	182, 320, 644, 654, 695
TscAI	CASTG	2 cut(s)	612, 1136
TseFI	GTSAC	3 cut(s)	87, 459, 872
TseI	GCWGC	2 cut(s)	249, 791
Tsp45I	GTSAC	3 cut(s)	87, 459, 872
TspDTI	ATGAA	1 cut(s)	1042
TspRI	CASTG	2 cut(s)	612, 1136
Tth111I	GACNNNGTC	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	319
VpaK11BI	GGWCC	4 cut(s)	15, 113, 261, 404
XapI	RAATTY	2 cut(s)	676, 691
XbaI	TCTAGA	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	746
XspI	CTAG	4 cut(s)	221, 245, 465, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.