Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

21674236 .. 21675401

Gene Structure 1166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCTGCTCCGAGGAAGCCACGGATTCTACTTGCTGCTAGTGGAAGTGTACGTAGCTGCCATAAAGTTTGGTAGACTCTGCCATTCTTTTTCTGAATGGGCTGAAGTAAGAGCAATTGGCACAAAAGCATCTTTGCATTTCATTGATAGAGCAGCACTTCCCAAGGATGTAATTCTTTACATGGATGAAGATGAATGGTCTAGTTGGAACAAAATAGGTGATATCATGCTTCATATTGAGCTACCTCGTTGGGCTGATGTCATGGTTATTGCCCCATTATCAGCAAACACCCTAGCCAAGATTGCCGCCGGTTTTTGTGACAACCTACTCACCTGTGCTGTGCGAGCATGGGACTACAACAAGCCTTTGTTTATTGCACCAGCCATGAACACCTTGATGTGGAAGAATCCCTTCACAGAGCGACATCTCATGACCATTGATGAACTTGGAGTTTCACTCATCCCACCTGTCTCGAAGAGGCTGACTTGTGGGGATTACGGGAATGGTGCAATGGCTGAGCCTTCTGTGATCTCTTCTACCAATATAGTTGAAGTAAGAGAAGACGCAGACATCAAGGAATTGGATGAGCTGTTCATTTGTGCACCTCCAGCCCCAGCTGCCACTCCACCACCTCTTGCACGTCGTCCGCCACCGCCACGCCCGCTAATGCTTCCACCGCCACGTCCGCTAATGCTTCCTCCTTTGGCAGCCGCTGAAGTGACAATCATGATCAACAAAAACAGAACTTTCCAAAGCATCATTTCGAAAGTTGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

260

Amino Acids

28.74

Weight (kDa)

5.98

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	19 - 173	1.5e-23	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	73
AciI	CCGC	7 cut(s)	306, 647, 653, 662, 677, 686, 711
AcuI	CTGAAG	2 cut(s)	123, 735
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	551
AjiI	CACGTC	2 cut(s)	641, 683
AloI	GAACNNNNNNTCC	2 cut(s)	575, 607
AluBI	AGCT	4 cut(s)	56, 241, 589, 617
AluI	AGCT	4 cut(s)	56, 241, 589, 617
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	1 cut(s)	475
Alw44I	GTGCAC	1 cut(s)	600
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	1 cut(s)	774
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	6 cut(s)	4, 34, 56, 152, 617, 707
Asp700I	GAANNNNTTC	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	230, 322
AsuII	TTCGAA	1 cut(s)	764
BaeGI	GKGCMC	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	5 cut(s)	21, 43, 164, 604, 719
BclI	TGATCA	1 cut(s)	729
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	3 cut(s)	38, 201, 293
BisI	GCNGC	8 cut(s)	5, 35, 57, 153, 306, 618, 708, 711
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	8 cut(s)	6, 36, 58, 154, 307, 619, 709, 712
BmgBI	CACGTC	2 cut(s)	641, 683
BmsI	GCATC	2 cut(s)	137, 765
BpiI	GAAGAC	1 cut(s)	567
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
BpmI	CTGGAG	1 cut(s)	591
Bpu1102I	GCTNAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	764
BsaAI	YACGTR	1 cut(s)	52
BsaJI	CCNNGG	3 cut(s)	10, 19, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	10, 19, 162
BseGI	GGATG	4 cut(s)	172, 190, 459, 589
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	507
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	5 cut(s)	21, 43, 164, 604, 719
BseYI	CCCAGC	1 cut(s)	613
BshFI	GGCC	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	776
Bsp119I	TTCGAA	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	2 cut(s)	528, 729
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	7 cut(s)	306, 647, 653, 662, 677, 686, 711
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	1 cut(s)	508
BspHI	TCATGA	2 cut(s)	429, 726
BspT104I	TTCGAA	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	10, 19, 162
BssMI	GATC	2 cut(s)	528, 729
BssT1I	CCWWGG	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	470, 538
BstBAI	YACGTR	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	345, 662
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	4 cut(s)	172, 190, 459, 589
BstKTI	GATC	2 cut(s)	531, 732
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	2 cut(s)	528, 729
BstMWI	GCNNNNNNNGC	7 cut(s)	302, 344, 608, 617, 661, 676, 685
BstSLI	GKGCMC	1 cut(s)	604
BstSNI	TACGTA	1 cut(s)	52
BstV1I	GCAGC	5 cut(s)	21, 43, 164, 604, 719
BstV2I	GAAGAC	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	776
BtgI	CCRYGG	1 cut(s)	19
BtrI	CACGTC	2 cut(s)	641, 683
BtsCI	GGATG	4 cut(s)	172, 190, 459, 589
Cac8I	GCNNGC	2 cut(s)	345, 662
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	2 cut(s)	429, 726
Cfr10I	RCCGGY	1 cut(s)	308
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	7 cut(s)	181, 226, 262, 348, 385, 430, 727
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	2 cut(s)	530, 731
DpnII	GATC	2 cut(s)	528, 729
Eam1104I	CTCTTC	2 cut(s)	470, 538
EarI	CTCTTC	2 cut(s)	470, 538
EciI	GGCGGA	1 cut(s)	636
Eco105I	TACGTA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	776
Eco32I	GATATC	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	123, 735
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	7 cut(s)	184, 229, 265, 351, 388, 433, 730
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	7 cut(s)	180, 225, 261, 347, 384, 429, 726
FauI	CCCGC	1 cut(s)	669
FbaI	TGATCA	1 cut(s)	729
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	8 cut(s)	5, 35, 57, 153, 306, 618, 708, 711
FokI	GGATG	4 cut(s)	179, 197, 446, 596
Fsp4HI	GCNGC	8 cut(s)	5, 35, 57, 153, 306, 618, 708, 711
FspBI	CTAG	3 cut(s)	38, 201, 293
GluI	GCNGC	8 cut(s)	5, 35, 57, 153, 306, 618, 708, 711
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	776
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	7 cut(s)	184, 229, 265, 351, 388, 433, 730
HinfI	GANTC	3 cut(s)	24, 75, 406
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	2 cut(s)	230, 322
Hpy166II	GTNNAC	3 cut(s)	49, 74, 602
Hpy188I	TCNGA	2 cut(s)	11, 94
Hpy188III	TCNNGA	3 cut(s)	430, 472, 727
Hpy8I	GTNNAC	3 cut(s)	49, 74, 602
Hpy99I	CGWCG	1 cut(s)	645
HpyAV	CCTTC	2 cut(s)	421, 531
HpyCH4IV	ACGT	3 cut(s)	51, 640, 682
HpyCH4V	TGCA	5 cut(s)	136, 377, 509, 602, 638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	302, 344, 608, 617, 661, 676, 685
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	3 cut(s)	51, 640, 682
Hsp92II	CATG	7 cut(s)	184, 229, 265, 351, 388, 433, 730
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	2 cut(s)	528, 729
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	6 cut(s)	322, 346, 393, 480, 621, 627
Lsp1109I	GCAGC	5 cut(s)	21, 43, 164, 604, 719
LweI	GCATC	2 cut(s)	137, 765
MaeI	CTAG	3 cut(s)	38, 201, 293
MaeII	ACGT	3 cut(s)	51, 640, 682
MaeIII	GTNAC	2 cut(s)	317, 718
MalI	GATC	2 cut(s)	530, 731
MboI	GATC	2 cut(s)	528, 729
MboII	GAAGA	5 cut(s)	200, 415, 487, 525, 572
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	604
MluCI	AATT	3 cut(s)	114, 171, 578
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	7 cut(s)	5, 255, 471, 615, 642, 708, 766
MroXI	GAANNNNTTC	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	2 cut(s)	617, 713
MspI	CCGG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	7 cut(s)	302, 344, 608, 617, 661, 676, 685
NdeII	GATC	2 cut(s)	528, 729
NlaIII	CATG	7 cut(s)	184, 229, 265, 351, 388, 433, 730
NmuCI	GTSAC	2 cut(s)	317, 718
NspV	TTCGAA	1 cut(s)	764
PagI	TCATGA	2 cut(s)	429, 726
PceI	AGGCCT	1 cut(s)	776
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	24, 406
PkrI	GCNGC	8 cut(s)	6, 36, 58, 154, 307, 619, 709, 712
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	395
SatI	GCNGC	8 cut(s)	5, 35, 57, 153, 306, 618, 708, 711
Sau3AI	GATC	2 cut(s)	528, 729
SchI	GAGTC	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	137, 765
SfuI	TTCGAA	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	395
SnaBI	TACGTA	1 cut(s)	52
Sse9I	AATT	3 cut(s)	114, 171, 578
SseBI	AGGCCT	1 cut(s)	776
SsiI	CCGC	7 cut(s)	306, 647, 653, 662, 677, 686, 711
SspMI	CTAG	3 cut(s)	38, 201, 293
StuI	AGGCCT	1 cut(s)	776
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	3 cut(s)	54, 643, 685
TaqI	TCGA	2 cut(s)	473, 764
TasI	AATT	3 cut(s)	114, 171, 578
TauI	GCSGC	2 cut(s)	308, 713
TfiI	GAWTC	2 cut(s)	24, 406
TseFI	GTSAC	2 cut(s)	317, 718
TseI	GCWGC	6 cut(s)	4, 34, 56, 152, 617, 707
Tsp45I	GTSAC	2 cut(s)	317, 718
TspDTI	ATGAA	7 cut(s)	130, 201, 207, 221, 401, 456, 583
TspGWI	ACGGA	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	3 cut(s)	38, 201, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.