Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

239603 .. 240765

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000068.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgccgccatcctctcttatcgcaggattcacgacgattaagaaaatttggcatctcttgaataaatcatggcttgctctatcgcagggagaagagagggaaccaacacaagccaatgctgctctgaggaagccacggattctacttggtgctagtggaagtgttgctgccataaagtttggtgaatggtctagttggaacaaaataagtgatatcgtgcttcatattgagctacctcgttgggctgatatcatggttattgccccattatcagcaaacaccctagccaagattgccggcggtttttgtgacaacctactcacctgtgctgtgcgagcatgggactacaacaagcctttgtttattgcaccagccatgaacaccttgatgtggaagaatcccttcacagatcgacatgtcatgtccattgatgaacttggagtttcactcatcccacctgtctcgaagaggctggcttgtggggattacgggaatggtgcaatagctgagccttctgtgacctcttctaccgtaagactagagtcacaagtacaacaagacatcaaggaattggataagctgttcatttgtgcacctccagccccagctgccactccaccacctcttgcacgtcgtccaccaccgccacgtccgctaatgcatcctcctttggcagccgctgaagtgacaatcatgatcaacaaaaacagaactttccaaagcatcattttgaaagtggagggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

248

Amino Acids

27.1

Weight (kDa)

9.25

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 300, 644, 653, 678
AcsI	RAATTY	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	61, 733
AjiI	CACGTC	2 cut(s)	632, 650
AloI	GAACNNNNNNTCC	2 cut(s)	566, 598
AluBI	AGCT	4 cut(s)	232, 506, 580, 608
AluI	AGCT	4 cut(s)	232, 506, 580, 608
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	1 cut(s)	466
Alw44I	GTGCAC	1 cut(s)	591
AlwNI	CAGNNNCTG	1 cut(s)	680
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	4 cut(s)	119, 167, 608, 674
ApoI	RAATTY	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	194, 313
BaeGI	GKGCMC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	4 cut(s)	106, 154, 595, 686
BccI	CCATC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	4 cut(s)	153, 192, 284, 539
BisI	GCNGC	6 cut(s)	5, 120, 168, 609, 675, 678
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	6 cut(s)	6, 121, 169, 610, 676, 679
BmgBI	CACGTC	2 cut(s)	632, 650
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	3 cut(s)	61, 670, 732
BoxI	GACNNNNGTC	1 cut(s)	541
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BpmI	CTGGAG	1 cut(s)	582
Bpu1102I	GCTNAGC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	3 cut(s)	8, 450, 661
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	116, 498
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	4 cut(s)	106, 154, 595, 686
BseYI	CCCAGC	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	2 cut(s)	409, 696
Bsp1720I	GCTNAGC	1 cut(s)	507
BspACI	CCGC	5 cut(s)	5, 300, 644, 653, 678
BspCNI	CTCAG	2 cut(s)	117, 499
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	409, 696
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	3 cut(s)	87, 461, 529
BstC8I	GCNNGC	4 cut(s)	75, 298, 336, 474
BstDEI	CTNAG	2 cut(s)	125, 507
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	8, 450, 661
BstKTI	GATC	2 cut(s)	412, 699
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	2 cut(s)	409, 696
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 293, 335, 599, 608, 652
BstNSI	RCATGY	1 cut(s)	419
BstPAI	GACNNNNGTC	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	4 cut(s)	106, 154, 595, 686
BtgI	CCRYGG	1 cut(s)	134
BtrI	CACGTC	2 cut(s)	632, 650
BtsCI	GGATG	3 cut(s)	8, 450, 661
Cac8I	GCNNGC	4 cut(s)	75, 298, 336, 474
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	693
Cfr10I	RCCGGY	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	7 cut(s)	69, 253, 339, 376, 416, 421, 694
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	2 cut(s)	125, 507
DpnI	GATC	2 cut(s)	411, 698
DpnII	GATC	2 cut(s)	409, 696
Eam1104I	CTCTTC	3 cut(s)	87, 461, 529
EarI	CTCTTC	3 cut(s)	87, 461, 529
Eco32I	GATATC	2 cut(s)	214, 250
Eco57I	CTGAAG	1 cut(s)	702
EcoRV	GATATC	2 cut(s)	214, 250
EcoT22I	ATGCAT	1 cut(s)	663
FaeI	CATG	7 cut(s)	72, 256, 342, 379, 419, 424, 697
FaiI	YATR	9 cut(s)	70, 173, 225, 254, 340, 377, 417, 422, 695
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	7 cut(s)	68, 252, 338, 375, 415, 420, 693
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	6 cut(s)	5, 120, 168, 609, 675, 678
FokI	GGATG	2 cut(s)	437, 648
Fsp4HI	GCNGC	6 cut(s)	5, 120, 168, 609, 675, 678
FspBI	CTAG	4 cut(s)	153, 192, 284, 539
GluI	GCNGC	6 cut(s)	5, 120, 168, 609, 675, 678
GsaI	CCCAGC	1 cut(s)	608
GsuI	CTGGAG	1 cut(s)	582
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	7 cut(s)	72, 256, 342, 379, 419, 424, 697
HinfI	GANTC	4 cut(s)	27, 139, 397, 542
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	194, 313
Hpy166II	GTNNAC	2 cut(s)	593, 638
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	4 cut(s)	31, 58, 463, 694
Hpy8I	GTNNAC	2 cut(s)	593, 638
Hpy99I	CGWCG	2 cut(s)	37, 636
HpyAV	CCTTC	2 cut(s)	412, 522
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	2 cut(s)	631, 649
HpyCH4V	TGCA	5 cut(s)	368, 500, 593, 629, 661
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 293, 335, 599, 608, 652
HpyF3I	CTNAG	2 cut(s)	125, 507
HpySE526I	ACGT	2 cut(s)	631, 649
Hsp92II	CATG	7 cut(s)	72, 256, 342, 379, 419, 424, 697
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	2 cut(s)	409, 696
LpnPI	CCDG	9 cut(s)	9, 71, 310, 337, 384, 458, 471, 612, 618
Lsp1109I	GCAGC	4 cut(s)	106, 154, 595, 686
LweI	GCATC	3 cut(s)	61, 670, 732
MaeI	CTAG	4 cut(s)	153, 192, 284, 539
MaeII	ACGT	2 cut(s)	631, 649
MaeIII	GTNAC	4 cut(s)	308, 517, 543, 685
MalI	GATC	2 cut(s)	411, 698
MboI	GATC	2 cut(s)	409, 696
MboII	GAAGA	4 cut(s)	104, 406, 478, 516
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	2 cut(s)	45, 569
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	176
Mph1103I	ATGCAT	1 cut(s)	663
MroNI	GCCGGC	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	2 cut(s)	608, 680
MspI	CCGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	6 cut(s)	119, 293, 335, 599, 608, 652
NaeI	GCCGGC	1 cut(s)	298
NdeII	GATC	2 cut(s)	409, 696
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	7 cut(s)	72, 256, 342, 379, 419, 424, 697
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	4 cut(s)	308, 517, 543, 685
NsiI	ATGCAT	1 cut(s)	663
NspI	RCATGY	1 cut(s)	419
PagI	TCATGA	1 cut(s)	693
PciI	ACATGT	1 cut(s)	415
PdiI	GCCGGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	27, 139, 397
PkrI	GCNGC	6 cut(s)	6, 121, 169, 610, 676, 679
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PscI	ACATGT	1 cut(s)	415
PshAI	GACNNNNGTC	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	6 cut(s)	5, 120, 168, 609, 675, 678
Sau3AI	GATC	2 cut(s)	409, 696
SchI	GAGTC	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	595
SfaNI	GCATC	3 cut(s)	61, 670, 732
SmiMI	CAYNNNNRTG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	45, 569
SsiI	CCGC	5 cut(s)	5, 300, 644, 653, 678
SspMI	CTAG	4 cut(s)	153, 192, 284, 539
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	2 cut(s)	634, 652
TaqI	TCGA	2 cut(s)	412, 464
TasI	AATT	2 cut(s)	45, 569
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	2 cut(s)	7, 680
TfiI	GAWTC	3 cut(s)	27, 139, 397
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	4 cut(s)	308, 517, 543, 685
TseI	GCWGC	4 cut(s)	119, 167, 608, 674
Tsp45I	GTSAC	4 cut(s)	308, 517, 543, 685
TspDTI	ATGAA	4 cut(s)	212, 392, 447, 574
TspGWI	ACGGA	1 cut(s)	151
VneI	GTGCAC	1 cut(s)	591
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	4 cut(s)	153, 192, 284, 539
Zsp2I	ATGCAT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.