Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

41448164 .. 41450850

Gene Structure 2687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTCAAGTTCCTGAAATTATTTCTATTGTAAGACAGTGTTTATGGGCAGTAGTTCCAAGATTAGTACCTTACATCAGTAAGCCACGGATTTTGGTGGCTGCTACAGGATGTATAGCTGCGTTTGATTTCATCAAAATATGTCGCTGCTTTTCACAATGGGGAGAGGTACGAGCAGTGGGCACAAGAGAGTCTTTGGAGTATATTGATAGACAGTCATTTCCCACAGACGTGTGGTTTTACACTGATGAGGATGAATTTAAGATTCACAATATCATTAGAGGTGACAACGTGCTCGCCATTCATCTCTGCGATTGGGCTGATGTAATTGTCATTGCTCCTTTGTCAGCAAACACACTATCCAAGGTTGTTTGCGGTTTGGATAACAATCTACTTACCTCCATCATATATGGATGGGACTATAGCAAGAAACCCTTCTATGTTGCCCCATCCATGTGCACATCAATGTGGAGAGATGGACGAACACACCATTATCTGGAGTCCATAACTCAGAAATATGGGATGTCAGTGATCAAGCCTCTAAGTTCCAGTGGGCAAATGGCTGATATATCCAGAATCATCTTGACTGGACAGAGTTCTTACTGCTTTTGTTTGAAGCCGGGAAAGAGTGAGATGAGATGTCTGTACTCTAATGCCACCTCCGACTCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001558 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022607 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0040008 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0055086 GO:0065003 GO:0065007 GO:0070206 GO:0070207 GO:0071704 GO:0071840 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

225

Amino Acids

25.32

Weight (kDa)

7.5

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	30 - 193	1e-18	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	496
AciI	CCGC	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	3 cut(s)	69, 171, 647
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	616
AjiI	CACGTC	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw21I	GWGCWC	2 cut(s)	297, 461
Alw44I	GTGCAC	1 cut(s)	457
ApaLI	GTGCAC	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	101, 119, 147
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	1 cut(s)	296
BaeGI	GKGCMC	2 cut(s)	185, 461
Bbv12I	GWGCWC	2 cut(s)	297, 461
BbvI	GCAGC	3 cut(s)	88, 106, 134
BccI	CCATC	4 cut(s)	408, 410, 457, 470
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	621
BfmI	CTRYAG	2 cut(s)	105, 421
BisI	GCNGC	3 cut(s)	102, 120, 148
BlsI	GCNGC	3 cut(s)	103, 121, 149
Bme1390I	CCNGG	1 cut(s)	621
BmgBI	CACGTC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	86, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	2 cut(s)	549, 592
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	86, 363
BseGI	GGATG	5 cut(s)	116, 259, 419, 449, 528
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	2 cut(s)	549, 592
BseSI	GKGCMC	2 cut(s)	185, 461
BseXI	GCAGC	3 cut(s)	88, 106, 134
BsiHKAI	GWGCWC	2 cut(s)	297, 461
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	185, 297, 461
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	549, 592
BssECI	CCNNGG	2 cut(s)	86, 363
BssMI	GATC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	39, 216
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	510, 542
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	5 cut(s)	116, 259, 419, 449, 528
BstKTI	GATC	1 cut(s)	534
BstMBI	GATC	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	619
BstSFI	CTRYAG	2 cut(s)	105, 421
BstSLI	GKGCMC	2 cut(s)	185, 461
BstV1I	GCAGC	3 cut(s)	88, 106, 134
BtgI	CCRYGG	1 cut(s)	86
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	5 cut(s)	116, 259, 419, 449, 528
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	5 cut(s)	44, 183, 243, 534, 556
Cac8I	GCNNGC	1 cut(s)	297
Csp6I	GTAC	3 cut(s)	68, 170, 646
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	8 cut(s)	5, 85, 101, 119, 320, 538, 563, 619
CviKI_1	RGCY	8 cut(s)	5, 85, 101, 119, 320, 538, 563, 619
CviQI	GTAC	3 cut(s)	68, 170, 646
DdeI	CTNAG	2 cut(s)	510, 542
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	457
FalI	AAGNNNNNCTT	4 cut(s)	178, 210, 419, 451
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	102, 120, 148
FokI	GGATG	5 cut(s)	123, 266, 426, 436, 535
Fsp4HI	GCNGC	3 cut(s)	102, 120, 148
GluI	GCNGC	3 cut(s)	102, 120, 148
GsuI	CTGGAG	1 cut(s)	518
HapII	CCGG	1 cut(s)	620
Hin1II	CATG	1 cut(s)	457
HinfI	GANTC	5 cut(s)	191, 265, 500, 576, 665
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	513, 664
Hpy188III	TCNNGA	4 cut(s)	14, 497, 573, 583
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	1 cut(s)	445
HpyCH4III	ACNGT	2 cut(s)	39, 216
HpyCH4IV	ACGT	2 cut(s)	231, 291
HpyCH4V	TGCA	1 cut(s)	459
HpyF3I	CTNAG	2 cut(s)	510, 542
HpySE526I	ACGT	2 cut(s)	231, 291
Hsp92II	CATG	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	7 cut(s)	27, 93, 482, 562, 573, 586, 633
Lsp1109I	GCAGC	3 cut(s)	88, 106, 134
MaeII	ACGT	2 cut(s)	231, 291
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MhlI	GDGCHC	3 cut(s)	185, 297, 461
MluCI	AATT	3 cut(s)	18, 257, 327
MlyI	GAGTC	3 cut(s)	200, 509, 659
MnlI	CCTC	6 cut(s)	160, 244, 275, 409, 549, 670
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	4 cut(s)	230, 454, 464, 466
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	1 cut(s)	621
NciI	CCSGG	1 cut(s)	621
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	265, 576
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	3 cut(s)	103, 121, 149
PleI	GAGTC	3 cut(s)	199, 508, 659
PpsI	GAGTC	3 cut(s)	199, 508, 659
RsaI	GTAC	3 cut(s)	69, 171, 647
RsaNI	GTAC	3 cut(s)	68, 170, 646
RseI	CAYNNNNRTG	4 cut(s)	230, 454, 464, 466
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	3 cut(s)	102, 120, 148
Sau3AI	GATC	1 cut(s)	531
SchI	GAGTC	3 cut(s)	200, 509, 659
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	3 cut(s)	185, 297, 461
SetI	ASST	9 cut(s)	73, 121, 171, 234, 286, 294, 369, 401, 662
SfcI	CTRYAG	2 cut(s)	105, 421
SmiMI	CAYNNNNRTG	4 cut(s)	230, 454, 464, 466
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	3 cut(s)	18, 257, 327
SsiI	CCGC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	619
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	39, 216
TaiI	ACGT	2 cut(s)	234, 294
TasI	AATT	3 cut(s)	18, 257, 327
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	265, 576
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	5 cut(s)	44, 183, 250, 534, 556
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	101, 119, 147
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	121, 270, 293
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	5 cut(s)	44, 183, 250, 534, 556
Van91I	CCANNNNNTGG	1 cut(s)	496
VneI	GTGCAC	1 cut(s)	457
XapI	RAATTY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.