Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

29965592 .. 29968791

Gene Structure 3200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1157900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAGTTTTATTTCGTTCTAGGTATGACGAGCTCTGAACCTGCGAGTCCAGAGATTGAGCAACAAGCCAATTCTGCCCCAAGGAGGCCTCGGATTCTACTTGCTGCTAGCGGAAGTGTAGCTGCCATAAAGTTTGGCAACCTATGCCATAGTTTTTCGGAATGGGCAGAAGTAAAAGCAGTTGCCACAAGAGCATCTTTGCATTTCATTGATAGAGCATCACTTCCCAAGGATGTAATCCTGTACACCGAAGAGGATGAATGGTCCACCTGGAACAAAGTTGGTGATAGTGTGCTTCACATTGAGCTCCGCAGTTGGGCTGATATCTTGGTTATCGCCCCATTGTCAGCAAACACACTAGGCAAGATTGCTGGGGGATTGTGTGACAATCTACTGACCTGCATTGTACGAGCATGGGACTACAGCAAGCCTTTCTTCGTTGCACCAGCCATGAACACTTTGATGTGGAAGAATCCCTTCACGGAGCAACATATCATGTCGATTGATGAACTTGGAGTTTCACTCATCCCACCTGTGACGAAGAGGCTGGCTTGTGGAGATTACGGGAATGGAGCAATGGCAGAACCTTCTGTGATTTATTCCACTGTAAGGCTCTTTTTCGAGTCACGAGTTCAACAGAGTGGTAATATCGTTCAGCAACCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

223

Amino Acids

24.52

Weight (kDa)

5.82

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	31 - 203	3.9e-28	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	49, 407
AciI	CCGC	2 cut(s)	111, 310
AfaI	GTAC	2 cut(s)	245, 408
AfiI	CCNNNNNNNGG	3 cut(s)	84, 316, 609
AgeI	ACCGGT	1 cut(s)	661
AgsI	TTSAA	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	3 cut(s)	33, 122, 307
AluI	AGCT	3 cut(s)	33, 122, 307
Alw21I	GWGCWC	2 cut(s)	35, 309
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	104, 122
AsiGI	ACCGGT	1 cut(s)	661
Asp700I	GAANNNNTTC	1 cut(s)	476
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	264
BanII	GRGCYC	2 cut(s)	35, 309
BauI	CACGAG	1 cut(s)	627
Bbv12I	GWGCWC	2 cut(s)	35, 309
BbvI	GCAGC	2 cut(s)	91, 109
BciT130I	CCWGG	1 cut(s)	271
BfaI	CTAG	3 cut(s)	20, 108, 359
BfmI	CTRYAG	1 cut(s)	421
BfuAI	ACCTGC	2 cut(s)	49, 407
BisI	GCNGC	2 cut(s)	105, 123
BlsI	GCNGC	2 cut(s)	106, 124
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	2 cut(s)	203, 227
BmtI	GCTAGC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
BsaJI	CCNNGG	3 cut(s)	80, 89, 228
BsaWI	WCCGGW	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 316, 609
Bse118I	RCCGGY	1 cut(s)	661
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	3 cut(s)	80, 89, 228
BseGI	GGATG	3 cut(s)	238, 262, 525
BseLI	CCNNNNNNNGG	3 cut(s)	84, 316, 609
BseMI	GCAATG	1 cut(s)	582
BseXI	GCAGC	2 cut(s)	91, 109
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	1 cut(s)	88
BshTI	ACCGGT	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	35, 309
BsiSI	CCGG	1 cut(s)	662
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	84, 316, 609
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	35, 309
Bsp1407I	TGTACA	1 cut(s)	243
BspACI	CCGC	2 cut(s)	111, 310
BspANI	GGCC	1 cut(s)	88
BspMI	ACCTGC	2 cut(s)	49, 407
BspOI	GCTAGC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	661
BsrGI	TGTACA	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	3 cut(s)	80, 89, 228
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	80, 228
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	2 cut(s)	246, 536
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	243
BstC8I	GCNNGC	3 cut(s)	109, 428, 549
BstF5I	GGATG	3 cut(s)	238, 262, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 144, 191
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	91, 109
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	238, 262, 525
BtsIMutI	CAGTG	1 cut(s)	603
BveI	ACCTGC	2 cut(s)	49, 407
Cac8I	GCNNGC	3 cut(s)	109, 428, 549
Cfr10I	RCCGGY	1 cut(s)	661
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	244, 407
CspAI	ACCGGT	1 cut(s)	661
CviAII	CATG	3 cut(s)	414, 451, 496
CviQI	GTAC	2 cut(s)	244, 407
Eam1104I	CTCTTC	2 cut(s)	246, 536
EarI	CTCTTC	2 cut(s)	246, 536
Ecl136II	GAGCTC	2 cut(s)	33, 307
Eco130I	CCWWGG	2 cut(s)	80, 228
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	35, 309
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	264
Eco53kI	GAGCTC	2 cut(s)	33, 307
EcoICRI	GAGCTC	2 cut(s)	33, 307
EcoRII	CCWGG	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	80, 228
EcoT38I	GRGCYC	2 cut(s)	35, 309
ErhI	CCWWGG	2 cut(s)	80, 228
FaeI	CATG	3 cut(s)	417, 454, 499
FaiI	YATR	9 cut(s)	26, 128, 145, 150, 415, 452, 492, 497, 667
FalI	AAGNNNNNCTT	6 cut(s)	181, 213, 419, 451, 461, 493
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	3 cut(s)	413, 450, 495
Fnu4HI	GCNGC	2 cut(s)	105, 123
FokI	GGATG	3 cut(s)	245, 269, 512
FriOI	GRGCYC	2 cut(s)	35, 309
Fsp4HI	GCNGC	2 cut(s)	105, 123
FspBI	CTAG	3 cut(s)	20, 108, 359
GluI	GCNGC	2 cut(s)	105, 123
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	1 cut(s)	662
Hin1II	CATG	3 cut(s)	417, 454, 499
HinfI	GANTC	4 cut(s)	46, 94, 472, 623
HpaII	CCGG	1 cut(s)	662
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	246, 267
Hpy188I	TCNGA	3 cut(s)	37, 93, 160
Hpy188III	TCNNGA	2 cut(s)	50, 627
Hpy8I	GTNNAC	2 cut(s)	246, 267
HpyAV	CCTTC	2 cut(s)	487, 597
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4V	TGCA	3 cut(s)	202, 402, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 144, 191
Hsp92II	CATG	3 cut(s)	417, 454, 499
LmnI	GCTCC	3 cut(s)	312, 484, 572
Lsp1109I	GCAGC	2 cut(s)	91, 109
LweI	GCATC	2 cut(s)	203, 227
MaeI	CTAG	3 cut(s)	20, 108, 359
MaeIII	GTNAC	3 cut(s)	383, 535, 624
MboII	GAAGA	4 cut(s)	263, 427, 481, 553
MhlI	GDGCHC	2 cut(s)	35, 309
MluCI	AATT	1 cut(s)	70
MlyI	GAGTC	2 cut(s)	55, 632
MnlI	CCTC	4 cut(s)	78, 99, 247, 537
MroXI	GAANNNNTTC	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	1 cut(s)	662
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	3 cut(s)	74, 144, 191
NheI	GCTAGC	1 cut(s)	107
NlaIII	CATG	3 cut(s)	417, 454, 499
NmuCI	GTSAC	3 cut(s)	383, 535, 624
PceI	AGGCCT	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	94, 472
PinAI	ACCGGT	1 cut(s)	661
PkrI	GCNGC	2 cut(s)	106, 124
PleI	GAGTC	2 cut(s)	54, 631
PpsI	GAGTC	2 cut(s)	54, 631
Psp124BI	GAGCTC	2 cut(s)	35, 309
Psp6I	CCWGG	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	264
RsaI	GTAC	2 cut(s)	245, 408
RsaNI	GTAC	2 cut(s)	244, 407
RseI	CAYNNNNRTG	1 cut(s)	461
SacI	GAGCTC	2 cut(s)	35, 309
SatI	GCNGC	2 cut(s)	105, 123
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	2 cut(s)	55, 632
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	2 cut(s)	35, 309
SfaNI	GCATC	2 cut(s)	203, 227
SfcI	CTRYAG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	70
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	111, 310
SspMI	CTAG	3 cut(s)	20, 108, 359
SstI	GAGCTC	2 cut(s)	35, 309
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	2 cut(s)	80, 228
TaaI	ACNGT	1 cut(s)	607
TaqI	TCGA	2 cut(s)	500, 621
TasI	AATT	1 cut(s)	70
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	94, 472
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	3 cut(s)	383, 535, 624
TseI	GCWGC	2 cut(s)	104, 122
Tsp45I	GTSAC	3 cut(s)	383, 535, 624
TspDTI	ATGAA	5 cut(s)	17, 196, 273, 467, 522
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	610
VpaK11BI	GGWCC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	3 cut(s)	20, 108, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.