Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

4247374 .. 4250154

Gene Structure 2781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07250.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTTGCTCTGAATCTGGCGGAGAAGAAAGGGAACCAACACAAGCCAATGCTGCGACGAGGAAGCCACGGATTCTACTGGCTGCTAGTGGAAGTGTAGCTGCCATAAAGTTTGGTAACCTCTGTCATTCTTTTTGTGAATGGGCTGAAGTAAGGGCTATTGCCACGAAAGCATCTTTGCATTTCATCGATAGGGCAGCACTTCCCAAGGATGTAATTCTTTACACGGATGAAGACGAATGGTCCAGTTGGAACAAAATAGGTGATAGTGTGCTTCATATTGAGCTACGTCGTTGGGCTGATGTCATGGTTATTGCCCCATTGTCAGCAAACACCCTAGCCAAGATTGCTGGCGGTTTATGTGACAACCTACTCACTTGTGTTGTGCGAGCATGGGACTACAACAAGCCTTTGTTTGTTGCACCAGCCATGAACACCTTGATGTGGAAGAACCCCTTCACTGAACGACATCTCATGTCCATTGATGAACTCGGAGTTTCACTCATCCCACCCGTCTCGAAGAGGCTGGCTTGTGGGGATTACGGGAATGGTGCAATGGCTGAGCCATCTGTTATATATTCTACCGTAAGACTATTCTATGAAACACGAGCTCAACAAGGTGGCAATATTGTTCAGTCAGCAGGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

217

Amino Acids

23.63

Weight (kDa)

6.09

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	24 - 195	1.3e-29	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	21, 354
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	444
AhdI	GACNNNNNGTC	1 cut(s)	241
AluBI	AGCT	3 cut(s)	101, 286, 611
AluI	AGCT	3 cut(s)	101, 286, 611
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	520
ApeKI	GCWGC	4 cut(s)	53, 83, 101, 197
Asp700I	GAANNNNTTC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	613
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	4 cut(s)	40, 70, 88, 209
BccI	CCATC	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	2 cut(s)	87, 338
BisI	GCNGC	4 cut(s)	54, 84, 102, 198
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	4 cut(s)	55, 85, 103, 199
Bme18I	GGWCC	1 cut(s)	243
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
Bpu1102I	GCTNAGC	1 cut(s)	561
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	68, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	2 cut(s)	84, 246
Bse3DI	GCAATG	1 cut(s)	561
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	68, 207
BseGI	GGATG	3 cut(s)	217, 235, 504
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	84, 246
BseXI	GCAGC	4 cut(s)	40, 70, 88, 209
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	520
BsmBI	CGTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	2 cut(s)	21, 354
BspCNI	CTCAG	1 cut(s)	553
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	84, 246
BssECI	CCNNGG	2 cut(s)	68, 207
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	606
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	515
BstC8I	GCNNGC	4 cut(s)	7, 352, 390, 528
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	116
BstF5I	GGATG	3 cut(s)	217, 235, 504
BstMAI	GTCTC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 170, 347
BstPI	GGTNACC	1 cut(s)	116
BstV1I	GCAGC	4 cut(s)	40, 70, 88, 209
BstV2I	GAAGAC	1 cut(s)	240
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	217, 235, 504
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	4 cut(s)	7, 352, 390, 528
Cfr13I	GGNCC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	189
CviAII	CATG	4 cut(s)	307, 393, 430, 475
DdeI	CTNAG	1 cut(s)	561
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	515
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	611
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	520
FaeI	CATG	4 cut(s)	310, 396, 433, 478
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	4 cut(s)	306, 392, 429, 474
Fnu4HI	GCNGC	4 cut(s)	54, 84, 102, 198
FokI	GGATG	3 cut(s)	224, 242, 491
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	4 cut(s)	54, 84, 102, 198
FspBI	CTAG	2 cut(s)	87, 338
GluI	GCNGC	4 cut(s)	54, 84, 102, 198
Hin1II	CATG	4 cut(s)	310, 396, 433, 478
HinfI	GANTC	2 cut(s)	14, 73
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	13, 494
Hpy188III	TCNNGA	1 cut(s)	517
Hpy99I	CGWCG	2 cut(s)	61, 294
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	181, 422, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 170, 347
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	310, 396, 433, 478
LpnPI	CCDG	7 cut(s)	3, 65, 259, 336, 438, 512, 627
Lsp1109I	GCAGC	4 cut(s)	40, 70, 88, 209
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	87, 338
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	116, 362
MboII	GAAGA	4 cut(s)	38, 245, 460, 532
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	3 cut(s)	54, 131, 516
MroXI	GAANNNNTTC	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	53, 170, 347
NlaIII	CATG	4 cut(s)	310, 396, 433, 478
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	14, 73
PkrI	GCNGC	4 cut(s)	55, 85, 103, 199
Psp124BI	GAGCTC	1 cut(s)	613
PspEI	GGTNACC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	613
SatI	GCNGC	4 cut(s)	54, 84, 102, 198
Sau96I	GGNCC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	613
SetI	ASST	9 cut(s)	103, 123, 265, 288, 292, 372, 440, 613, 622
SfaNI	GCATC	1 cut(s)	182
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	21, 354
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	2 cut(s)	87, 338
SstI	GAGCTC	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	189, 518
TasI	AATT	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	14, 73
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	4 cut(s)	53, 83, 101, 197
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	6 cut(s)	175, 246, 266, 446, 501, 615
TspGWI	ACGGA	2 cut(s)	85, 242
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	2 cut(s)	87, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.