Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

7797502 .. 7810353

Gene Structure 12852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCTTTCATATCAGGCACAAGGTGCACAAGGGCCGAGGGTGTTACTAGTTTGTACCCGAAGTGTAGAGGCAAAATTTTTCCCTCATCTTTGCCGTCATTTCTCTGAATGGGCAGAGGTAAAGGCAGTTTTGGACTCAAGTTCTTCAGGTCTCATTGACTTGCAATCAATTCCCAGTGACATACCTTGTTACGACGAAAAATACGAGCAATTGTGGAGATTTGGTGATTCCTTGACCCATACTGTACTCTCTAGATGGGCTGACGTGATTGTTATTGCTCCATTGTCAGTGCAGACACTAGGCAAGATTTCTGTAGGGTTGTCCAAGGATCTCGTCACATGTATCGTGAAAGAATGGGATTATAGAAAGCCCTTTTTTGTTGCCCCTGCCATGAATAACCGAATGTGGAGCAACTTGTTTATAGAGGAGCATATGAGACAGCTTAGGAATCATGGGATTAGGGTCGTTGGCCCTAATAATGGTGCAATGGCTCAAGTTCCTGAAATCATTTCTATTGTAAGACAGTGTTTTTGGGCAGTAGTTCCAAGATTAGTACCTTACATCAGTAAGCCACGGATTTTGGTGGCTGCTACAGGATGTATAGCTGCGTTTGATTTCATCAAAATATGTCGCTGCTTTTCACAATGGGGAGAGGTACGAGCACTGGGCACAAGAGAGTCTTTGGAGTATATTGATAGACAGTCATTTCCCACAGATGTGTGGTTTTACACTGATGAGGATGAGTTTAAGATTCACAATATCATTAGAGGTGACAACGTGCTCGCCATTCATCTCTGTGATTGGGCTGATGTAATTGTCATTGCTCCTTTGTCAGCAAACACACTATCCAAGTTGTATTCAATATCTTGCAAGGAGTTGTGGATTGTGAAACCTTTTGTTTATCTGATTAACCGGCAACCGTATCTGGAAACAACGATTAGTGGATATTGGAATGCTGGAAAAGGAGCAAAGATCCTGCTGGAGTTTGACCTTTTGTCTAAAATGCTCACATATGATTCTGCTCAAAGAATCACAGCGAGAAAAGCAATGGAGCATCCCTATTACAACCAAGATGGCTTTGAGATCGAGGTGGCAGTTCTGAAGATTTTGTGGGAATGTAATTGGGATACTGGGTTATCCTTGGTTCCTAGTCACTTGGAAATAGTTAGTAGTGTTACTGAAATGGAGATGGTTAATACAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

401

Amino Acids

45.73

Weight (kDa)

6.02

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	13 - 175	4.4e-14	Flavoprotein
Flavoprotein	PF02441	192 - 293	6.5e-10	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	336, 967
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	2 cut(s)	129, 1121
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	4 cut(s)	55, 246, 555, 657
AfiI	CCNNNNNNNGG	1 cut(s)	479
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	861
AhdI	GACNNNNNGTC	1 cut(s)	994
AhlI	ACTAGT	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	265
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	2 cut(s)	442, 605
AluI	AGCT	2 cut(s)	442, 605
Alw21I	GWGCWC	3 cut(s)	28, 664, 783
Alw26I	GTCTC	2 cut(s)	155, 430
Alw44I	GTGCAC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	336, 967
AoxI	GGCC	2 cut(s)	32, 469
ApaLI	GTGCAC	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	587, 605, 633
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	513, 545
AspS9I	GGNCC	2 cut(s)	32, 470
AsuHPI	GGTGA	2 cut(s)	236, 782
BaeGI	GKGCMC	2 cut(s)	28, 671
Bbv12I	GWGCWC	3 cut(s)	28, 664, 783
BbvI	GCAGC	3 cut(s)	574, 592, 620
BccI	CCATC	3 cut(s)	249, 1067, 1183
BceAI	ACGGC	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	1120
BcoDI	GTCTC	2 cut(s)	155, 430
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	4 cut(s)	47, 252, 299, 1149
BfmI	CTRYAG	2 cut(s)	312, 591
BfuI	GTATCC	1 cut(s)	1120
BisI	GCNGC	3 cut(s)	588, 606, 634
BlsI	GCNGC	3 cut(s)	589, 607, 635
BmeRI	GACNNNNNGTC	1 cut(s)	994
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	32, 470
BmiI	GGNNCC	1 cut(s)	1146
BmrI	ACTGGG	3 cut(s)	168, 674, 1140
BmsI	GCATC	1 cut(s)	1063
BmuI	ACTGGG	3 cut(s)	168, 674, 1140
BpmI	CTGGAG	1 cut(s)	1001
Bpu10I	CCTNAGC	1 cut(s)	443
BpuEI	CTTGAG	2 cut(s)	121, 477
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	35, 324, 572, 1140
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse118I	RCCGGY	1 cut(s)	912
Bse1I	ACTGG	3 cut(s)	174, 669, 1135
Bse3DI	GCAATG	3 cut(s)	492, 819, 1053
BseDI	CCNNGG	4 cut(s)	35, 324, 572, 1140
BseGI	GGATG	3 cut(s)	602, 745, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	3 cut(s)	492, 819, 1053
BseNI	ACTGG	3 cut(s)	174, 669, 1135
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	2 cut(s)	28, 671
BseXI	GCAGC	3 cut(s)	574, 592, 620
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	34, 471
BsiHKAI	GWGCWC	3 cut(s)	28, 664, 783
BsiSI	CCGG	1 cut(s)	913
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	2 cut(s)	155, 430
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	2 cut(s)	34, 471
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	4 cut(s)	28, 664, 671, 783
Bsp143I	GATC	3 cut(s)	328, 972, 1083
BspANI	GGCC	2 cut(s)	34, 471
BspLI	GGNNCC	1 cut(s)	1146
BspPI	GGATC	2 cut(s)	336, 967
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	3 cut(s)	492, 819, 1053
BsrFI	RCCGGY	1 cut(s)	912
BsrI	ACTGG	3 cut(s)	174, 669, 1135
BssAI	RCCGGY	1 cut(s)	912
BssECI	CCNNGG	4 cut(s)	35, 324, 572, 1140
BssMI	GATC	3 cut(s)	328, 972, 1083
BssT1I	CCWWGG	2 cut(s)	324, 1140
Bst4CI	ACNGT	4 cut(s)	244, 525, 702, 921
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	783
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	1 cut(s)	572
BstF5I	GGATG	3 cut(s)	602, 745, 1054
BstKTI	GATC	3 cut(s)	331, 975, 1086
BstMAI	GTCTC	2 cut(s)	155, 430
BstMBI	GATC	3 cut(s)	328, 972, 1083
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 1043
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	2 cut(s)	312, 591
BstSLI	GKGCMC	2 cut(s)	28, 671
BstV1I	GCAGC	3 cut(s)	574, 592, 620
BstX2I	RGATCY	2 cut(s)	328, 972
BstYI	RGATCY	2 cut(s)	328, 972
BsuI	GTATCC	1 cut(s)	1120
BsuRI	GGCC	2 cut(s)	34, 471
BtgI	CCRYGG	1 cut(s)	572
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	602, 745, 1054
BtsIMutI	CAGTG	5 cut(s)	181, 294, 530, 662, 729
Cac8I	GCNNGC	1 cut(s)	783
Cfr10I	RCCGGY	1 cut(s)	912
Cfr13I	GGNCC	2 cut(s)	32, 470
Csp6I	GTAC	4 cut(s)	54, 245, 554, 656
CspCI	CAANNNNNGTGG	2 cut(s)	561, 596
CviAII	CATG	3 cut(s)	339, 391, 452
CviQI	GTAC	4 cut(s)	54, 245, 554, 656
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	3 cut(s)	330, 974, 1085
DpnII	GATC	3 cut(s)	328, 972, 1083
DraIII	CACNNNGTG	1 cut(s)	23
DriI	GACNNNNNGTC	1 cut(s)	994
Eam1105I	GACNNNNNGTC	1 cut(s)	994
Eco130I	CCWWGG	2 cut(s)	324, 1140
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	129, 1121
EcoT14I	CCWWGG	2 cut(s)	324, 1140
ErhI	CCWWGG	2 cut(s)	324, 1140
FaeI	CATG	3 cut(s)	342, 394, 455
FalI	AAGNNNNNCTT	2 cut(s)	664, 696
FatI	CATG	3 cut(s)	338, 390, 451
FauNDI	CATATG	2 cut(s)	432, 1012
Fnu4HI	GCNGC	3 cut(s)	588, 606, 634
FokI	GGATG	3 cut(s)	609, 752, 1041
Fsp4HI	GCNGC	3 cut(s)	588, 606, 634
FspBI	CTAG	4 cut(s)	47, 252, 299, 1149
GluI	GCNGC	3 cut(s)	588, 606, 634
GsuI	CTGGAG	1 cut(s)	1001
HaeIII	GGCC	2 cut(s)	34, 471
HapII	CCGG	1 cut(s)	913
Hin1II	CATG	3 cut(s)	342, 394, 455
HinfI	GANTC	7 cut(s)	134, 227, 448, 677, 751, 1016, 1029
HpaII	CCGG	1 cut(s)	913
HphI	GGTGA	2 cut(s)	236, 782
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	3 cut(s)	106, 906, 1101
Hpy188III	TCNNGA	4 cut(s)	252, 346, 500, 926
Hpy8I	GTNNAC	1 cut(s)	26
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4III	ACNGT	4 cut(s)	244, 525, 702, 921
HpyCH4IV	ACGT	2 cut(s)	264, 777
HpyCH4V	TGCA	5 cut(s)	26, 163, 292, 485, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 1043
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	2 cut(s)	264, 777
Hsp92II	CATG	3 cut(s)	342, 394, 455
Kzo9I	GATC	3 cut(s)	328, 972, 1083
LmnI	GCTCC	6 cut(s)	283, 408, 427, 829, 965, 1051
Lsp1109I	GCAGC	3 cut(s)	574, 592, 620
LweI	GCATC	1 cut(s)	1063
MaeI	CTAG	4 cut(s)	47, 252, 299, 1149
MaeII	ACGT	2 cut(s)	264, 777
MaeIII	GTNAC	7 cut(s)	42, 176, 188, 334, 770, 1151, 1174
MalI	GATC	3 cut(s)	330, 974, 1085
MboI	GATC	3 cut(s)	328, 972, 1083
MboII	GAAGA	2 cut(s)	135, 1114
MfeI	CAATTG	1 cut(s)	209
MflI	RGATCY	2 cut(s)	328, 972
MhlI	GDGCHC	4 cut(s)	28, 664, 671, 783
MluCI	AATT	5 cut(s)	74, 168, 209, 813, 1120
MlyI	GAGTC	2 cut(s)	128, 686
MnlI	CCTC	9 cut(s)	30, 61, 93, 109, 418, 646, 730, 761, 1081
MseI	TTAA	3 cut(s)	747, 909, 1194
MslI	CAYNNNNRTG	2 cut(s)	716, 795
MspI	CCGG	1 cut(s)	913
MunI	CAATTG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	958
MwoI	GCNNNNNNNGC	2 cut(s)	23, 1043
NdeI	CATATG	2 cut(s)	432, 1012
NdeII	GATC	3 cut(s)	328, 972, 1083
NlaIII	CATG	3 cut(s)	342, 394, 455
NlaIV	GGNNCC	1 cut(s)	1146
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	4 cut(s)	176, 334, 770, 1151
NspI	RCATGY	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	716
PciI	ACATGT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	958
PfeI	GAWTC	5 cut(s)	227, 448, 751, 1016, 1029
PkrI	GCNGC	3 cut(s)	589, 607, 635
PleI	GAGTC	2 cut(s)	128, 685
PpsI	GAGTC	2 cut(s)	128, 685
PscI	ACATGT	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	1146
PspPI	GGNCC	2 cut(s)	32, 470
PsuI	RGATCY	2 cut(s)	328, 972
RsaI	GTAC	4 cut(s)	55, 246, 555, 657
RsaNI	GTAC	4 cut(s)	54, 245, 554, 656
RseI	CAYNNNNRTG	2 cut(s)	716, 795
SaqAI	TTAA	3 cut(s)	747, 909, 1194
SatI	GCNGC	3 cut(s)	588, 606, 634
Sau3AI	GATC	3 cut(s)	328, 972, 1083
Sau96I	GGNCC	2 cut(s)	32, 470
SchI	GAGTC	2 cut(s)	128, 686
SduI	GDGCHC	4 cut(s)	28, 664, 671, 783
SfaNI	GCATC	1 cut(s)	1063
SfcI	CTRYAG	2 cut(s)	312, 591
SmiMI	CAYNNNNRTG	2 cut(s)	716, 795
SmlI	CTYRAG	2 cut(s)	136, 492
SmoI	CTYRAG	2 cut(s)	136, 492
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	5 cut(s)	74, 168, 209, 813, 1120
SspMI	CTAG	4 cut(s)	47, 252, 299, 1149
StyI	CCWWGG	2 cut(s)	324, 1140
TaaI	ACNGT	4 cut(s)	244, 525, 702, 921
TaiI	ACGT	2 cut(s)	267, 780
TaqI	TCGA	1 cut(s)	1086
TasI	AATT	5 cut(s)	74, 168, 209, 813, 1120
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	5 cut(s)	227, 448, 751, 1016, 1029
Tru1I	TTAA	3 cut(s)	747, 909, 1194
Tru9I	TTAA	3 cut(s)	747, 909, 1194
TscAI	CASTG	5 cut(s)	181, 294, 530, 669, 736
TseFI	GTSAC	4 cut(s)	176, 334, 770, 1151
TseI	GCWGC	3 cut(s)	587, 605, 633
Tsp45I	GTSAC	4 cut(s)	176, 334, 770, 1151
TspDTI	ATGAA	3 cut(s)	407, 607, 779
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	5 cut(s)	181, 294, 530, 669, 736
VneI	GTGCAC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	1 cut(s)	342
XspI	CTAG	4 cut(s)	47, 252, 299, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.