Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

25834922 .. 25837664

Gene Structure 2743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1164500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAAATACTTAAACGAAAAGTAAAAGAACATAAAACACACATCATCGTTTCGGACTTCGGAACCCCTCTGGAGAGAGAGGCACTCCGAGACCGGTTCGCCTCACTCAAAGTCCAATACGCTGCGTTTCGGTCTCTGAACCCACCCGCCTCGCTGAGATTTCAGCTCAAAAACCCTAAATCGCCTCAAACCACACGCAGAGGGAACTCACCATTCCAAGGTATGTCAAGCTCCGAACCTGTGAGTCCAGAGATTGAGCCACAAGCCAATCCTGCCCCAAGGAGGCCTCGGATTCTACTTGCTGCTAGTGGAAGTGTAGCTGCCATAAAGTTTGGCAACCTTTGCCATAGTTTTTCGGAATGGGCAGAAGTAAAAGCAGTTGCCACAAGAGCATCTTTGCATTTCATTGATAGAGCATCACTTCCCAAGGATGTAATCCTGTACACCGACGAGGATGAATGGTCTACTTGGAACAAAATGGGTGATAGTGTGCTTCACATTGAGCTCCGCCGTTGGGCGGATATCTTGGTTATCGCCCCATTGTCTGCAAACACACTAGGCAAGATTGCTGGGGGATTGTGTGACAATCTACTGACCTGCATCGTACGAGCATGGGACTACAGCAAACCTTTCTTTGTCGCACCAGCCATGAATACCTTGATGTGGAAGAACCCCTTCACAGAGCGACATATCATGTTGATTGATGAACTTGGAGTTTCACTCATCCCACCAGTCACAAAGAGGCTGGCTTGTGGAGATTACGGGAATGGAGCAATGGCCGAACCTTCTTTGATTTATTCCACTGTAAGACTCTTTTTCGAGTCACGAGTTCAACAAGGCGGCAATAACGTTCAGCAACCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

289

Amino Acids

32.17

Weight (kDa)

9.49

Isoelectric Point (pI)

60.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	97 - 266	2.3e-27	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccI	GTMKAC	1 cut(s)	464
AciI	CCGC	4 cut(s)	147, 508, 518, 840
AclI	AACGTT	1 cut(s)	849
AcoI	YGGCCR	1 cut(s)	777
AfaI	GTAC	2 cut(s)	443, 606
AfiI	CCNNNNNNNGG	5 cut(s)	218, 282, 514, 517, 663
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	833
AluBI	AGCT	4 cut(s)	166, 231, 320, 505
AluI	AGCT	4 cut(s)	166, 231, 320, 505
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	84, 138
AoxI	GGCC	2 cut(s)	284, 777
ApeKI	GCWGC	3 cut(s)	122, 302, 320
AsiGI	ACCGGT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	674
AsuHPI	GGTGA	2 cut(s)	201, 494
BanII	GRGCYC	1 cut(s)	507
BauI	CACGAG	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	109, 289, 307
BceAI	ACGGC	1 cut(s)	495
BcoDI	GTCTC	2 cut(s)	84, 138
BfaI	CTAG	2 cut(s)	306, 557
BfmI	CTRYAG	1 cut(s)	619
BfuAI	ACCTGC	1 cut(s)	605
BisI	GCNGC	4 cut(s)	123, 303, 321, 841
BlsI	GCNGC	4 cut(s)	124, 304, 322, 842
BmiI	GGNNCC	1 cut(s)	64
BmsI	GCATC	3 cut(s)	401, 425, 609
BplI	GAGNNNNNCTC	4 cut(s)	69, 101, 705, 737
BpmI	CTGGAG	1 cut(s)	92
BsaI	GGTCTC	2 cut(s)	84, 138
BsaJI	CCNNGG	4 cut(s)	217, 278, 287, 426
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	5 cut(s)	218, 282, 514, 517, 663
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	731, 860
Bse3DI	GCAATG	1 cut(s)	780
BseDI	CCNNGG	4 cut(s)	217, 278, 287, 426
BseGI	GGATG	3 cut(s)	436, 460, 723
BseLI	CCNNNNNNNGG	5 cut(s)	218, 282, 514, 517, 663
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	731, 860
BseXI	GCAGC	3 cut(s)	109, 289, 307
BseYI	CCCAGC	1 cut(s)	569
BshFI	GGCC	2 cut(s)	286, 779
BshTI	ACCGGT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	94
BsiWI	CGTACG	1 cut(s)	604
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	5 cut(s)	218, 282, 514, 517, 663
BsmAI	GTCTC	2 cut(s)	84, 138
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	286, 779
Bso31I	GGTCTC	2 cut(s)	84, 138
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp1407I	TGTACA	1 cut(s)	441
BspACI	CCGC	4 cut(s)	147, 508, 518, 840
BspANI	GGCC	2 cut(s)	286, 779
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	605
BspTNI	GGTCTC	2 cut(s)	84, 138
BsrDI	GCAATG	1 cut(s)	780
BsrFI	RCCGGY	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	731, 860
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	4 cut(s)	217, 278, 287, 426
BssSI	CACGAG	1 cut(s)	825
BssT1I	CCWWGG	3 cut(s)	217, 278, 426
Bst2BI	CACGAG	1 cut(s)	825
Bst4CI	ACNGT	1 cut(s)	805
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	3 cut(s)	436, 460, 723
BstMAI	GTCTC	2 cut(s)	84, 138
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 342, 389
BstSFI	CTRYAG	1 cut(s)	619
BstV1I	GCAGC	3 cut(s)	109, 289, 307
BsuRI	GGCC	2 cut(s)	286, 779
BtsCI	GGATG	3 cut(s)	436, 460, 723
BtsIMutI	CAGTG	1 cut(s)	801
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	747
Cfr10I	RCCGGY	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	442, 605
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	3 cut(s)	612, 649, 694
CviQI	GTAC	2 cut(s)	442, 605
DdeI	CTNAG	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	777
EciI	GGCGGA	2 cut(s)	497, 533
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	3 cut(s)	217, 278, 426
Eco147I	AGGCCT	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	507
Eco31I	GGTCTC	2 cut(s)	84, 138
Eco32I	GATATC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	3 cut(s)	217, 278, 426
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	3 cut(s)	217, 278, 426
FaeI	CATG	3 cut(s)	615, 652, 697
FaiI	YATR	9 cut(s)	33, 224, 326, 348, 613, 650, 690, 695, 865
FalI	AAGNNNNNCTT	4 cut(s)	379, 411, 659, 691
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	3 cut(s)	611, 648, 693
FauI	CCCGC	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	464
Fnu4HI	GCNGC	4 cut(s)	123, 303, 321, 841
FokI	GGATG	3 cut(s)	443, 467, 710
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	4 cut(s)	123, 303, 321, 841
FspBI	CTAG	2 cut(s)	306, 557
GluI	GCNGC	4 cut(s)	123, 303, 321, 841
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	286, 779
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	3 cut(s)	615, 652, 697
HinfI	GANTC	4 cut(s)	244, 292, 810, 821
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	2 cut(s)	201, 494
Hpy166II	GTNNAC	2 cut(s)	444, 465
Hpy188I	TCNGA	7 cut(s)	55, 62, 89, 138, 235, 291, 358
Hpy188III	TCNNGA	3 cut(s)	71, 248, 825
Hpy8I	GTNNAC	2 cut(s)	444, 465
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	685, 795
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	3 cut(s)	400, 548, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 342, 389
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	849
Hsp92II	CATG	3 cut(s)	615, 652, 697
LmnI	GCTCC	3 cut(s)	236, 510, 770
Lsp1109I	GCAGC	3 cut(s)	109, 289, 307
LweI	GCATC	3 cut(s)	401, 425, 609
MaeI	CTAG	2 cut(s)	306, 557
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	3 cut(s)	581, 733, 822
MboII	GAAGA	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	507
MlyI	GAGTC	3 cut(s)	253, 804, 830
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	1 cut(s)	12
MspI	CCGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	272, 342, 389
NlaIII	CATG	3 cut(s)	615, 652, 697
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	3 cut(s)	581, 733, 822
PceI	AGGCCT	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	292
Pfl23II	CGTACG	1 cut(s)	604
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	4 cut(s)	124, 304, 322, 842
PleI	GAGTC	3 cut(s)	252, 804, 829
PpsI	GAGTC	3 cut(s)	252, 804, 829
Psp124BI	GAGCTC	1 cut(s)	507
Psp1406I	AACGTT	1 cut(s)	849
PspFI	CCCAGC	1 cut(s)	569
PspLI	CGTACG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	64
RsaI	GTAC	2 cut(s)	443, 606
RsaNI	GTAC	2 cut(s)	442, 605
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	4 cut(s)	123, 303, 321, 841
SchI	GAGTC	3 cut(s)	253, 804, 830
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	3 cut(s)	401, 425, 609
SfcI	CTRYAG	1 cut(s)	619
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	4 cut(s)	147, 508, 518, 840
SspMI	CTAG	2 cut(s)	306, 557
SstI	GAGCTC	1 cut(s)	507
StuI	AGGCCT	1 cut(s)	286
StyI	CCWWGG	3 cut(s)	217, 278, 426
TaaI	ACNGT	1 cut(s)	805
TaiI	ACGT	1 cut(s)	852
TaqI	TCGA	1 cut(s)	819
TaqII	GACCGA	1 cut(s)	120
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	843
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	808
TseFI	GTSAC	3 cut(s)	581, 733, 822
TseI	GCWGC	3 cut(s)	122, 302, 320
Tsp45I	GTSAC	3 cut(s)	581, 733, 822
TspDTI	ATGAA	5 cut(s)	17, 394, 471, 665, 720
TspRI	CASTG	1 cut(s)	808
XmiI	GTMKAC	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	2 cut(s)	306, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.