Rw4G018670

phosphopantothenoylcysteine

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
41374986 .. 41376652
1667 bp
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UTR
Exon/CDS
Intron
Rw4G018670.1

Sequence Viewer

Length: 354 bp
ATGCCGCCATCCTCTCTTATCGCAGGATTCACGACGGTTAAGAAAATTTGGCATCTCTTGAATAAATCATGGCTTGCTCTATCGCAGGGAGAAGAGAGGGAACCAACACAAGCCAATGCTGCTCCGAGGAAGCCACGGATTCTACTTGCTGCTAGTGGAAGTGTTGCTGCCATAAAGTTTGTAAGAGCAATTGCCACAAAAGCATCTTTGCATTTCATTGATAGAGCAGCACTTCCCAAGGATGTAATTCTTTACATGGATGAAGATGAATGGTCTAGTTGGAACAAAATAGGTGATATCTTTCTGACTATCTCTCTTGTGTTTAAAACCAGGATATCAGAGTTGATTAATTGA

Protein Analysis

117

Amino Acids

13.05

Weight (kDa)

9.63

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 45
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 1 cut(s) 329
ApeKI GCWGC 4 cut(s) 119, 149, 167, 227
ApoI RAATTY 1 cut(s) 45
AseI ATTAAT 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 305
BbvI GCAGC 4 cut(s) 106, 136, 154, 239
BccI CCATC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 331
BfaI CTAG 2 cut(s) 153, 276
BisI GCNGC 5 cut(s) 5, 120, 150, 168, 228
BlsI GCNGC 5 cut(s) 6, 121, 151, 169, 229
Bme1390I CCNGG 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 61, 212
BsaJI CCNNGG 3 cut(s) 125, 134, 237
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 3 cut(s) 125, 134, 237
BseGI GGATG 3 cut(s) 8, 247, 265
BseXI GCAGC 4 cut(s) 106, 136, 154, 239
BspACI CCGC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 102
BssECI CCNNGG 3 cut(s) 125, 134, 237
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 134
BstF5I GGATG 3 cut(s) 8, 247, 265
BstMWI GCNNNNNNNGC 2 cut(s) 119, 200
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 329
BstV1I GCAGC 4 cut(s) 106, 136, 154, 239
BtgI CCRYGG 1 cut(s) 134
BtsCI GGATG 3 cut(s) 8, 247, 265
Cac8I GCNNGC 1 cut(s) 75
CviAII CATG 2 cut(s) 69, 256
CviJI RGCY 3 cut(s) 73, 113, 133
CviKI_1 RGCY 3 cut(s) 73, 113, 133
DraI TTTAAA 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 237
Eco32I GATATC 2 cut(s) 298, 336
EcoRII CCWGG 1 cut(s) 329
EcoRV GATATC 2 cut(s) 298, 336
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 72, 259
FaiI YATR 3 cut(s) 70, 173, 257
FatI CATG 2 cut(s) 68, 255
Fnu4HI GCNGC 5 cut(s) 5, 120, 150, 168, 228
FokI GGATG 2 cut(s) 254, 272
Fsp4HI GCNGC 5 cut(s) 5, 120, 150, 168, 228
FspBI CTAG 2 cut(s) 153, 276
GluI GCNGC 5 cut(s) 5, 120, 150, 168, 228
Hin1II CATG 2 cut(s) 72, 259
HinfI GANTC 2 cut(s) 27, 139
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 3 cut(s) 126, 306, 340
Hpy188III TCNNGA 2 cut(s) 31, 58
Hpy99I CGWCG 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 200
Hsp92II CATG 2 cut(s) 72, 259
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 4 cut(s) 9, 71, 316, 343
Lsp1109I GCAGC 4 cut(s) 106, 136, 154, 239
LweI GCATC 2 cut(s) 61, 212
MaeI CTAG 2 cut(s) 153, 276
MboII GAAGA 2 cut(s) 104, 275
MfeI CAATTG 1 cut(s) 189
MluCI AATT 4 cut(s) 45, 189, 246, 349
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 3 cut(s) 22, 90, 120
MseI TTAA 3 cut(s) 39, 324, 348
MspR9I CCNGG 1 cut(s) 331
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 119, 200
NlaIII CATG 2 cut(s) 72, 259
NlaIV GGNNCC 1 cut(s) 102
PfeI GAWTC 2 cut(s) 27, 139
PkrI GCNGC 5 cut(s) 6, 121, 151, 169, 229
PshBI ATTAAT 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 39, 324, 348
SatI GCNGC 5 cut(s) 5, 120, 150, 168, 228
ScrFI CCNGG 1 cut(s) 331
SetI ASST 1 cut(s) 295
SfaNI GCATC 2 cut(s) 61, 212
Sse9I AATT 4 cut(s) 45, 189, 246, 349
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 153, 276
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 37
TasI AATT 4 cut(s) 45, 189, 246, 349
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 27, 139
Tru1I TTAA 3 cut(s) 39, 324, 348
Tru9I TTAA 3 cut(s) 39, 324, 348
TseI GCWGC 4 cut(s) 119, 149, 167, 227
TspDTI ATGAA 3 cut(s) 205, 276, 282
TspGWI ACGGA 1 cut(s) 151
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 1 cut(s) 45
XspI CTAG 2 cut(s) 153, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.