Rh3CG104200

Flavoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001212
Physical Location & Seq
Forward (+)
8251155 .. 8270045
18891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG104200.1

Sequence Viewer

Length: 1539 bp
ATGGCCGGAAGCATAACCCCTGTTCACAGAAAACCCCGGATTGTTCTCGGTGCTTGCGGGTGTGCCGCTGCACTGGATTTTCCGAGATTGTGCCGAGCTTTTCTTAATTGGGCAGAAGTAAAAGCTGTAGGCACACCCGACGGTTTCAAATACGTTGAACACGTAGCGATGCCCGTGGGGGTAAGTTTACTCGTTAAGGATGATTGGAAAAATTTCCATGACCCTGTGCTTCATAGGCATCTTGCTGCTTGGGCTGATGCATTAGTCATTGCTCCATTGTCAGCAAACACTCTAAGCAAGATTGATGCAGGTCTTTGTGACAACCTTCTCACTGATATTGTACGTGCATGGGACTGTGGAAAACCGTTATTTGTTGCGCCGGCAATGACCTACATGACATGGAAAAATACCATCACAAAGAAGTCTATAGAGTCAATTCGACAACATGGTATCAAAGTGATTGGCCCGGCGGAAAGTGGTGGAATGGCTGAAATCTATTCCATTGTTGATAAGAACCTGAACCCGTTGCTCGCCGACCTGGAGATCGAGGACCGCCATTTTGATGGCCGTGATCAAGGAGCCGCCGCTTTGTATGGCCTTGACCGAGCCGCAGTAGACTATGTCCGGCAACGTGGAGGTTCTGCTTGCGATTTCAGAGTGTTGGGTTTGGCCGTGGAGGCAGACGGCAAGCAGCAATGGGCTGACGTGATTGTTATTGCTCCATTGTCAGTGCAGACACTAGGCAAGATTGCTGTAGGGTTGTCCAAGGATCTCGTCACATGTATCGTGAAAGAATGGGATTATAGAAAGCCCTTTTTTGTTGCCCCTGCCATGAATAACCGAATGTGGAGCAACTTGTTTATAGAGGAGCATATGAGACAGCTTAGGAATCATGGGATTAGGGTCATTGGCCCTAATAATGGTGCAATGGCTCAAGTTCCTGAAATCATTTCTATTGTAAGGCAGTGTTTTTGGGCAGTAGTTCCAAGATTAGTACCTTACATCAGTAAGCCACGGATTTTGGTGGCTGCTACAGGATGTATAGCTGCGTTTGATTTCATCAAAATATGTCGCTGCTTTTCACAATGGGGAGAGGTACGAGCAGTGGGCACAAGAGAGTCTTTGGAGTATATTGATAGACAGTCATTTCCCACAGATGTGTGGTTTTACACTGATGAGGATGAGTTTAAGATTCACAATATCATTAGAGGTGACAACGTGCTCGCCATTCATCTCTGCGATTGGGCTGATGTAATTGTCATTGCTCCTTTGTCAGCAAACACACTATCCAAGGTTGTTTGCGGTTTGGATGACAATCTACTTACCTCCATCATATATGGATGGGACTATAGCAAGAAACCCTTCTATGTTGCCCCAGCCATGTGCACATCAATGTGGAGAGATGGACGAACACAACATTATCTGGAGTCCATAACTCAGAAATATGGGATGTCAGTGATCAAGCCTCTAAGTTCCAGTGGGCAAATGGCTGATATATCCAGAATCATCTTGACTGTAAAACAATATTTCATTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
Flavoprotein

Protein Analysis

512

Amino Acids

57.05

Weight (kDa)

7.87

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavoprotein PF02441 13 - 175 2e-20 Flavoprotein
Flavoprotein PF02441 231 - 322 4.1e-12 Flavoprotein
Flavoprotein PF02441 339 - 508 6.3e-20 Flavoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 615
AciI CCGC 8 cut(s) 57, 66, 470, 553, 582, 585, 609, 1302
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 3 cut(s) 3, 565, 669
AcsI RAATTY 1 cut(s) 211
AfaI GTAC 3 cut(s) 342, 996, 1098
AfiI CCNNNNNNNGG 1 cut(s) 920
AflIII ACRYGT 2 cut(s) 160, 779
AgsI TTSAA 2 cut(s) 148, 158
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 1 cut(s) 537
AleI CACNNNNGTG 1 cut(s) 1157
AluBI AGCT 4 cut(s) 98, 125, 883, 1046
AluI AGCT 4 cut(s) 98, 125, 883, 1046
Alw21I GWGCWC 2 cut(s) 1224, 1388
Alw26I GTCTC 1 cut(s) 871
Alw44I GTGCAC 1 cut(s) 1384
AlwI GGATC 1 cut(s) 777
AoxI GGCC 6 cut(s) 3, 463, 565, 595, 669, 910
ApaLI GTGCAC 1 cut(s) 1384
ApeKI GCWGC 6 cut(s) 68, 245, 691, 1028, 1046, 1074
ApoI RAATTY 1 cut(s) 211
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
Asp700I GAANNNNTTC 2 cut(s) 212, 1361
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 3 cut(s) 464, 550, 911
AsuC2I CCSGG 2 cut(s) 37, 467
AsuHPI GGTGA 1 cut(s) 1223
AvaII GGWCC 1 cut(s) 550
BaeGI GKGCMC 2 cut(s) 1112, 1388
Bbv12I GWGCWC 2 cut(s) 1224, 1388
BbvI GCAGC 6 cut(s) 55, 232, 703, 1015, 1033, 1061
BccI CCATC 5 cut(s) 419, 557, 1335, 1337, 1397
BceAI ACGGC 3 cut(s) 552, 656, 700
BciT130I CCWGG 1 cut(s) 539
BclI TGATCA 2 cut(s) 571, 1458
BcnI CCSGG 2 cut(s) 37, 467
BcoDI GTCTC 1 cut(s) 871
BfaI CTAG 1 cut(s) 740
BfmI CTRYAG 5 cut(s) 126, 426, 753, 1032, 1348
BfuAI ACCTGC 1 cut(s) 299
BglI GCCNNNNNGGC 1 cut(s) 677
Bme1390I CCNGG 3 cut(s) 37, 467, 539
Bme18I GGWCC 1 cut(s) 550
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 3 cut(s) 464, 550, 911
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 3 cut(s) 37, 467, 539
BmsI GCATC 4 cut(s) 159, 247, 247, 295
BpmI CTGGAG 2 cut(s) 560, 1445
Bpu10I CCTNAGC 1 cut(s) 884
BpuEI CTTGAG 1 cut(s) 918
BpuMI CCSGG 2 cut(s) 37, 467
BsaAI YACGTR 3 cut(s) 163, 344, 1536
BsaBI GATNNNNATC 1 cut(s) 1314
BsaJI CCNNGG 6 cut(s) 35, 174, 672, 765, 1013, 1290
Bsc4I CCNNNNNNNGG 1 cut(s) 920
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 78, 1476
Bse3DI GCAATG 5 cut(s) 267, 390, 701, 933, 1260
Bse8I GATNNNNATC 1 cut(s) 1314
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 6 cut(s) 35, 174, 672, 765, 1013, 1290
BseGI GGATG 6 cut(s) 205, 1043, 1186, 1315, 1346, 1455
BseJI GATNNNNATC 1 cut(s) 1314
BseLI CCNNNNNNNGG 1 cut(s) 920
BseMI GCAATG 5 cut(s) 267, 390, 701, 933, 1260
BseMII CTCAG 1 cut(s) 1451
BseNI ACTGG 2 cut(s) 78, 1476
BseRI GAGGAG 1 cut(s) 881
BseSI GKGCMC 2 cut(s) 1112, 1388
BseXI GCAGC 6 cut(s) 55, 232, 703, 1015, 1033, 1061
BseYI CCCAGC 1 cut(s) 1375
BsgI GTGCAG 2 cut(s) 54, 752
BshFI GGCC 6 cut(s) 5, 465, 567, 597, 671, 912
BsiHKAI GWGCWC 2 cut(s) 1224, 1388
BsiSI CCGG 5 cut(s) 6, 37, 380, 467, 625
BslFI GGGAC 2 cut(s) 365, 1358
BslI CCNNNNNNNGG 1 cut(s) 920
BsmAI GTCTC 1 cut(s) 871
BsmFI GGGAC 2 cut(s) 365, 1358
BsnI GGCC 6 cut(s) 5, 465, 567, 597, 671, 912
Bsp1286I GDGCHC 3 cut(s) 1112, 1224, 1388
Bsp143I GATC 4 cut(s) 543, 571, 769, 1458
BspACI CCGC 8 cut(s) 57, 66, 470, 553, 582, 585, 609, 1302
BspANI GGCC 6 cut(s) 5, 465, 567, 597, 671, 912
BspCNI CTCAG 1 cut(s) 1450
BspLI GGNNCC 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 1 cut(s) 777
BsrDI GCAATG 5 cut(s) 267, 390, 701, 933, 1260
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 2 cut(s) 78, 1476
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 6 cut(s) 35, 174, 672, 765, 1013, 1290
BssMI GATC 4 cut(s) 543, 571, 769, 1458
BssT1I CCWWGG 2 cut(s) 765, 1290
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 5 cut(s) 143, 356, 366, 1143, 1516
BstBAI YACGTR 3 cut(s) 163, 344, 1536
BstC8I GCNNGC 6 cut(s) 55, 381, 531, 646, 689, 1224
BstDEI CTNAG 4 cut(s) 293, 884, 1437, 1469
BstDSI CCRYGG 3 cut(s) 174, 672, 1013
BstF5I GGATG 6 cut(s) 205, 1043, 1186, 1315, 1346, 1455
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 4 cut(s) 546, 574, 772, 1461
BstMAI GTCTC 1 cut(s) 871
BstMBI GATC 4 cut(s) 543, 571, 769, 1458
BstMWI GCNNNNNNNGC 3 cut(s) 235, 251, 677
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 783
BstSCI CCNGG 3 cut(s) 35, 465, 537
BstSFI CTRYAG 5 cut(s) 126, 426, 753, 1032, 1348
BstSLI GKGCMC 2 cut(s) 1112, 1388
BstSNI TACGTA 1 cut(s) 1536
BstV1I GCAGC 6 cut(s) 55, 232, 703, 1015, 1033, 1061
BstX2I RGATCY 1 cut(s) 769
BstXI CCANNNNNNTGG 1 cut(s) 563
BstYI RGATCY 1 cut(s) 769
BsuRI GGCC 6 cut(s) 5, 465, 567, 597, 671, 912
BtgI CCRYGG 3 cut(s) 174, 672, 1013
BtgZI GCGATG 1 cut(s) 182
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 6 cut(s) 205, 1043, 1186, 1315, 1346, 1455
BtsI GCAGTG 2 cut(s) 971, 1110
BtsIMutI CAGTG 8 cut(s) 71, 330, 735, 971, 1110, 1170, 1461, 1483
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 6 cut(s) 55, 381, 531, 646, 689, 1224
CfoI GCGC 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 464, 550, 911
Csp6I GTAC 3 cut(s) 341, 995, 1097
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CviAII CATG 9 cut(s) 218, 348, 394, 399, 446, 780, 832, 893, 1381
CviQI GTAC 3 cut(s) 341, 995, 1097
DdeI CTNAG 4 cut(s) 293, 884, 1437, 1469
DpnI GATC 4 cut(s) 545, 573, 771, 1460
DpnII GATC 4 cut(s) 543, 571, 769, 1458
EaeI YGGCCR 3 cut(s) 3, 565, 669
EciI GGCGGA 1 cut(s) 485
Eco105I TACGTA 1 cut(s) 1536
Eco130I CCWWGG 2 cut(s) 765, 1290
Eco47I GGWCC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 765, 1290
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 2 cut(s) 765, 1290
FaeI CATG 9 cut(s) 221, 351, 397, 402, 449, 783, 835, 896, 1384
FalI AAGNNNNNCTT 4 cut(s) 1105, 1137, 1346, 1378
FaqI GGGAC 2 cut(s) 365, 1358
FatI CATG 9 cut(s) 217, 347, 393, 398, 445, 779, 831, 892, 1380
FauI CCCGC 1 cut(s) 50
FauNDI CATATG 1 cut(s) 873
FbaI TGATCA 2 cut(s) 571, 1458
FblI GTMKAC 1 cut(s) 615
FokI GGATG 6 cut(s) 212, 1050, 1193, 1322, 1353, 1462
FspBI CTAG 1 cut(s) 740
GlaI GCGC 1 cut(s) 378
GsaI CCCAGC 1 cut(s) 1379
GsuI CTGGAG 2 cut(s) 560, 1445
HaeIII GGCC 6 cut(s) 5, 465, 567, 597, 671, 912
HapII CCGG 5 cut(s) 6, 37, 380, 467, 625
HhaI GCGC 1 cut(s) 379
Hin1II CATG 9 cut(s) 221, 351, 397, 402, 449, 783, 835, 896, 1384
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 6 cut(s) 431, 889, 1118, 1192, 1427, 1503
HpaII CCGG 5 cut(s) 6, 37, 380, 467, 625
HphI GGTGA 1 cut(s) 1223
Hpy166II GTNNAC 4 cut(s) 25, 188, 616, 1386
Hpy188I TCNGA 3 cut(s) 84, 656, 1440
Hpy188III TCNNGA 5 cut(s) 787, 941, 1424, 1500, 1510
Hpy8I GTNNAC 4 cut(s) 25, 188, 616, 1386
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 335, 1372
HpyCH4III ACNGT 5 cut(s) 143, 356, 366, 1143, 1516
HpyCH4IV ACGT 7 cut(s) 153, 162, 343, 631, 705, 1218, 1535
HpyCH4V TGCA 7 cut(s) 71, 260, 308, 347, 733, 926, 1386
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 251, 677
HpyF3I CTNAG 4 cut(s) 293, 884, 1437, 1469
HpySE526I ACGT 7 cut(s) 153, 162, 343, 631, 705, 1218, 1535
Hsp92II CATG 9 cut(s) 221, 351, 397, 402, 449, 783, 835, 896, 1384
HspAI GCGC 1 cut(s) 377
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
Ksp22I TGATCA 2 cut(s) 571, 1458
Kzo9I GATC 4 cut(s) 543, 571, 769, 1458
LmnI GCTCC 6 cut(s) 277, 578, 724, 849, 868, 1270
Lsp1109I GCAGC 6 cut(s) 55, 232, 703, 1015, 1033, 1061
LweI GCATC 4 cut(s) 159, 247, 247, 295
MaeI CTAG 1 cut(s) 740
MaeII ACGT 7 cut(s) 153, 162, 343, 631, 705, 1218, 1535
MaeIII GTNAC 3 cut(s) 317, 775, 1211
MalI GATC 4 cut(s) 545, 573, 771, 1460
MboI GATC 4 cut(s) 543, 571, 769, 1458
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 3 cut(s) 1112, 1224, 1388
MluCI AATT 4 cut(s) 106, 211, 435, 1254
MlyI GAGTC 3 cut(s) 440, 1127, 1436
MnlI CCTC 9 cut(s) 541, 629, 670, 859, 1087, 1171, 1202, 1336, 1476
Mph1103I ATGCAT 1 cut(s) 262
MroNI GCCGGC 1 cut(s) 379
MroXI GAANNNNTTC 2 cut(s) 212, 1361
MseI TTAA 3 cut(s) 105, 195, 1188
MslI CAYNNNNRTG 4 cut(s) 561, 1157, 1391, 1393
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 5 cut(s) 6, 37, 380, 467, 625
MspR9I CCNGG 3 cut(s) 37, 467, 539
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 3 cut(s) 235, 251, 677
NaeI GCCGGC 1 cut(s) 381
NciI CCSGG 2 cut(s) 37, 467
NdeI CATATG 1 cut(s) 873
NdeII GATC 4 cut(s) 543, 571, 769, 1458
NgoMIV GCCGGC 1 cut(s) 379
NlaIII CATG 9 cut(s) 221, 351, 397, 402, 449, 783, 835, 896, 1384
NlaIV GGNNCC 1 cut(s) 580
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 3 cut(s) 317, 775, 1211
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 1 cut(s) 783
OliI CACNNNNGTG 1 cut(s) 1157
PciI ACATGT 1 cut(s) 779
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 381
PdmI GAANNNNTTC 2 cut(s) 212, 1361
PfeI GAWTC 3 cut(s) 889, 1192, 1503
PflFI GACNNNGTC 1 cut(s) 620
PleI GAGTC 3 cut(s) 439, 1126, 1435
PpsI GAGTC 3 cut(s) 439, 1126, 1435
Ppu21I YACGTR 3 cut(s) 163, 344, 1536
PscI ACATGT 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 1375
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 3 cut(s) 464, 550, 911
PsuI RGATCY 1 cut(s) 769
PsyI GACNNNGTC 1 cut(s) 620
RsaI GTAC 3 cut(s) 342, 996, 1098
RsaNI GTAC 3 cut(s) 341, 995, 1097
RseI CAYNNNNRTG 4 cut(s) 561, 1157, 1391, 1393
SaqAI TTAA 3 cut(s) 105, 195, 1188
Sau3AI GATC 4 cut(s) 543, 571, 769, 1458
Sau96I GGNCC 3 cut(s) 464, 550, 911
SchI GAGTC 3 cut(s) 440, 1127, 1436
ScrFI CCNGG 3 cut(s) 37, 467, 539
SduI GDGCHC 3 cut(s) 1112, 1224, 1388
SfaNI GCATC 4 cut(s) 159, 247, 247, 295
SfcI CTRYAG 5 cut(s) 126, 426, 753, 1032, 1348
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 4 cut(s) 561, 1157, 1391, 1393
SmlI CTYRAG 1 cut(s) 933
SmoI CTYRAG 1 cut(s) 933
SnaBI TACGTA 1 cut(s) 1536
Sse9I AATT 4 cut(s) 106, 211, 435, 1254
SsiI CCGC 8 cut(s) 57, 66, 470, 553, 582, 585, 609, 1302
SspI AATATT 1 cut(s) 1526
SspMI CTAG 1 cut(s) 740
StyD4I CCNGG 3 cut(s) 35, 465, 537
StyI CCWWGG 2 cut(s) 765, 1290
TaaI ACNGT 5 cut(s) 143, 356, 366, 1143, 1516
TaiI ACGT 7 cut(s) 156, 165, 346, 634, 708, 1221, 1538
TaqI TCGA 2 cut(s) 439, 546
TaqII GACCGA 1 cut(s) 618
TasI AATT 4 cut(s) 106, 211, 435, 1254
TauI GCSGC 4 cut(s) 68, 584, 587, 611
TfiI GAWTC 3 cut(s) 889, 1192, 1503
Tru1I TTAA 3 cut(s) 105, 195, 1188
Tru9I TTAA 3 cut(s) 105, 195, 1188
TscAI CASTG 8 cut(s) 78, 337, 735, 971, 1110, 1177, 1461, 1483
TseFI GTSAC 3 cut(s) 317, 775, 1211
TseI GCWGC 6 cut(s) 68, 245, 691, 1028, 1046, 1074
Tsp45I GTSAC 3 cut(s) 317, 775, 1211
TspDTI ATGAA 5 cut(s) 221, 848, 1048, 1220, 1519
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 8 cut(s) 78, 337, 735, 971, 1110, 1177, 1461, 1483
Tth111I GACNNNGTC 1 cut(s) 620
VneI GTGCAC 1 cut(s) 1384
VpaK11BI GGWCC 1 cut(s) 550
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 1483
XmiI GTMKAC 1 cut(s) 615
XmnI GAANNNNTTC 2 cut(s) 212, 1361
XspI CTAG 1 cut(s) 740
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.