Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

17969395 .. 17970551

Gene Structure 1157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48605.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAATATGGAAGTGGATACAGTAACAAGGAAGCCTCGTATCTTACTAGCTGCAAGTGGAAGTGTGGCTTCAATTAAGTTCAGTAATCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTCGCTTCAAAATCATCTCTCAATTTCGTTGATAAACCTTCTCTACCTCAGAATGTGACTCTCTATACAGATGAAGATGAATGGTCTAGCTGGAACAAGATTGGTGATCCCGTTCTTCATATCGAGCTCAGACGCTGGGCTGATGTTATGATCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCTGGTGGGTTATGTGATAATCTATTGACATGTATAGTAAGAGCATGGGATTATAGCAAACCGTTGTTTGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCACCTTGTCTTGCTTGATGAACTTGGAATCACCCTAATTCCTCCCATCAAGAAGAAACTGGCCTGTGGAGACTACGGTAATGGCGCAATGGCTGAGCCTTCTCTGATTTATTCCACTGTTAGACTGTTCTGGGAGTCACAAGCTCGTAAACAAAGAGATGGAACCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

201

Amino Acids

22.41

Weight (kDa)

6.82

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	13 - 183	9.6e-29	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	72, 135
AluBI	AGCT	4 cut(s)	50, 216, 253, 578
AluI	AGCT	4 cut(s)	50, 216, 253, 578
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	242, 457
BanI	GGYRCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	488, 587
BceAI	ACGGC	2 cut(s)	110, 449
BciVI	GTATCC	1 cut(s)	10
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	47, 213
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	51
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	437, 598
Bpu1102I	GCTNAGC	1 cut(s)	528
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	498, 600
Bse3DI	GCAATG	2 cut(s)	279, 528
BseMI	GCAATG	2 cut(s)	279, 528
BseMII	CTCAG	4 cut(s)	117, 188, 268, 519
BseNI	ACTGG	2 cut(s)	498, 600
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	261
BshFI	GGCC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	232, 276
Bsp1720I	GCTNAGC	1 cut(s)	528
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	4 cut(s)	116, 187, 267, 520
BspLI	GGNNCC	2 cut(s)	437, 598
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	435
BsrDI	GCAATG	2 cut(s)	279, 528
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	498, 600
BssAI	RCCGGY	1 cut(s)	391
BssMI	GATC	2 cut(s)	232, 276
Bst4CI	ACNGT	5 cut(s)	22, 378, 512, 553, 561
BstDEI	CTNAG	4 cut(s)	103, 174, 254, 528
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	2 cut(s)	235, 279
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	2 cut(s)	232, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	497
BtgZI	GCGATG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	261
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	391
CseI	GACGC	1 cut(s)	267
CviAII	CATG	2 cut(s)	345, 360
DdeI	CTNAG	4 cut(s)	103, 174, 254, 528
DpnI	GATC	2 cut(s)	234, 278
DpnII	GATC	2 cut(s)	232, 276
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	2 cut(s)	348, 363
FaiI	YATR	9 cut(s)	8, 192, 246, 275, 328, 346, 350, 361, 369
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FatI	CATG	2 cut(s)	344, 359
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	51
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	47, 213
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	2 cut(s)	348, 363
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	184, 462, 569
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	2 cut(s)	242, 457
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	4 cut(s)	106, 177, 257, 540
Hpy188III	TCNNGA	1 cut(s)	484
Hpy8I	GTNNAC	1 cut(s)	584
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	174, 543
HpyCH4III	ACNGT	5 cut(s)	22, 378, 512, 553, 561
HpyCH4V	TGCA	2 cut(s)	53, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	4 cut(s)	103, 174, 254, 528
Hsp92II	CATG	2 cut(s)	348, 363
HspAI	GCGC	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	232, 276
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	7 cut(s)	202, 247, 303, 405, 479, 511, 550
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	47, 213
MaeIII	GTNAC	3 cut(s)	22, 181, 570
MalI	GATC	2 cut(s)	234, 278
MboI	GATC	2 cut(s)	232, 276
MboII	GAAGA	3 cut(s)	212, 233, 499
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	3 cut(s)	72, 148, 471
MlyI	GAGTC	2 cut(s)	178, 578
MnlI	CCTC	3 cut(s)	45, 183, 486
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	2 cut(s)	232, 276
NlaIII	CATG	2 cut(s)	348, 363
NlaIV	GGNNCC	2 cut(s)	437, 598
NmuCI	GTSAC	2 cut(s)	181, 570
NspI	RCATGY	1 cut(s)	348
PciI	ACATGT	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	2 cut(s)	178, 577
PpsI	GAGTC	2 cut(s)	178, 577
PscI	ACATGT	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	437, 598
PstNI	CAGNNNCTG	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	232, 276
SchI	GAGTC	2 cut(s)	178, 578
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	7 cut(s)	52, 166, 175, 218, 255, 441, 580
SgrAI	CRCCGGYG	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	72, 148, 471
SspMI	CTAG	2 cut(s)	47, 213
SstI	GAGCTC	1 cut(s)	255
TaaI	ACNGT	5 cut(s)	22, 378, 512, 553, 561
TaqI	TCGA	1 cut(s)	249
TasI	AATT	3 cut(s)	72, 148, 471
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	181, 570
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	181, 570
TspDTI	ATGAA	6 cut(s)	17, 213, 219, 233, 413, 468
TspRI	CASTG	1 cut(s)	556
XceI	RCATGY	1 cut(s)	348
XspI	CTAG	2 cut(s)	47, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.