Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

7728967 .. 7729901

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCCGGAAGCATAACCCCTGTTCACAGAAAACCCCGGATTGTTCTCGGTGCTTGCGGGTGTGCCGCTGCACTAGATTTTCCGAGATTGTGCCGAACTTTTCTTAATTGGGCAGAAGTAAAAGCTGTAGGCACACCCGACGGGTTCAAATACGTTGAACACGTAGCGATGCCCGTGGGGGTAAGTTTACTCATTAAGGATGATTGGAAAAATTTCCATGACCCTGTGCTTCATAGGCATCTTGCTGCTTGGGCTGATGCATTAGTCATTGCTCCATTGTCAGCAAACACTCTAAGCAAGATTGATGCAGGTCTTTGTGACAACCTTCTCACTGATATTGTACGTGCATGGGACTGTGGAAAACCGTTATTTGTTGCGCCGGCAATGACCTACATGACATGGAAAAATACCATCACAAAGAAGTCTATAGAGTCAATTCGACAACATGGTATCAAAGTGATTGGACCGGCGGAAAGTGGTGGAATGGCTGAAATCTATTCCATTGTTGATAAGGTAAAAAGTGATTTATGGATCCTCTCTGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001558 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022607 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0040008 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0055086 GO:0065003 GO:0065007 GO:0070206 GO:0070207 GO:0071704 GO:0071840 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

182

Amino Acids

19.91

Weight (kDa)

8.6

Isoelectric Point (pI)

21.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	13 - 174	9.5e-22	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AciI	CCGC	3 cut(s)	57, 66, 470
AclWI	GGATC	2 cut(s)	526, 539
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	148, 158
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
AlwI	GGATC	2 cut(s)	526, 539
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	68, 245
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	55, 232
BccI	CCATC	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	37
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	126, 426
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	66, 69, 246
BlsI	GCNGC	3 cut(s)	67, 70, 247
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	533
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	4 cut(s)	159, 247, 247, 295
BpuMI	CCSGG	1 cut(s)	37
BsaAI	YACGTR	2 cut(s)	163, 344
BsaJI	CCNNGG	2 cut(s)	35, 174
Bse118I	RCCGGY	2 cut(s)	379, 466
Bse3DI	GCAATG	2 cut(s)	267, 390
BseDI	CCNNGG	2 cut(s)	35, 174
BseGI	GGATG	1 cut(s)	205
BseMI	GCAATG	2 cut(s)	267, 390
BseXI	GCAGC	2 cut(s)	55, 232
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	4 cut(s)	6, 37, 380, 467
BslFI	GGGAC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	3 cut(s)	57, 66, 470
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	2 cut(s)	526, 539
BsrDI	GCAATG	2 cut(s)	267, 390
BsrFI	RCCGGY	2 cut(s)	379, 466
BssAI	RCCGGY	2 cut(s)	379, 466
BssECI	CCNNGG	2 cut(s)	35, 174
BssMI	GATC	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	356, 366
BstBAI	YACGTR	2 cut(s)	163, 344
BstC8I	GCNNGC	2 cut(s)	55, 381
BstDEI	CTNAG	1 cut(s)	293
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	534
BstMBI	GATC	1 cut(s)	531
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 251
BstSCI	CCNGG	1 cut(s)	35
BstSFI	CTRYAG	2 cut(s)	126, 426
BstV1I	GCAGC	2 cut(s)	55, 232
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	55, 381
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	2 cut(s)	379, 466
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	5 cut(s)	218, 348, 394, 399, 446
CviJI	RGCY	4 cut(s)	5, 125, 254, 488
CviKI_1	RGCY	4 cut(s)	5, 125, 254, 488
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	5 cut(s)	221, 351, 397, 402, 449
FaiI	YATR	9 cut(s)	14, 219, 234, 349, 395, 400, 428, 447, 529
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	5 cut(s)	217, 347, 393, 398, 445
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	66, 69, 246
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	66, 69, 246
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	3 cut(s)	66, 69, 246
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	6, 37, 380, 467
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	5 cut(s)	221, 351, 397, 402, 449
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	4 cut(s)	6, 37, 380, 467
Hpy166II	GTNNAC	2 cut(s)	25, 188
Hpy188I	TCNGA	1 cut(s)	84
Hpy8I	GTNNAC	2 cut(s)	25, 188
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	356, 366
HpyCH4IV	ACGT	3 cut(s)	153, 162, 343
HpyCH4V	TGCA	4 cut(s)	71, 260, 308, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 251
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	3 cut(s)	153, 162, 343
Hsp92II	CATG	5 cut(s)	221, 351, 397, 402, 449
HspAI	GCGC	1 cut(s)	377
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	19, 33, 50, 237, 294, 393, 480
Lsp1109I	GCAGC	2 cut(s)	55, 232
LweI	GCATC	4 cut(s)	159, 247, 247, 295
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	3 cut(s)	153, 162, 343
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MflI	RGATCY	1 cut(s)	531
MluCI	AATT	4 cut(s)	106, 211, 435, 544
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	1 cut(s)	545
Mph1103I	ATGCAT	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	2 cut(s)	105, 195
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	4 cut(s)	6, 37, 380, 467
MspR9I	CCNGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	235, 251
NaeI	GCCGGC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	1 cut(s)	531
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	221, 351, 397, 402, 449
NlaIV	GGNNCC	1 cut(s)	533
NmuCI	GTSAC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	67, 70, 247
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Ppu21I	YACGTR	2 cut(s)	163, 344
PspN4I	GGNNCC	1 cut(s)	533
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	105, 195
SatI	GCNGC	3 cut(s)	66, 69, 246
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	8 cut(s)	127, 156, 165, 313, 327, 346, 392, 516
SfaNI	GCATC	4 cut(s)	159, 247, 247, 295
SfcI	CTRYAG	2 cut(s)	126, 426
SinI	GGWCC	1 cut(s)	464
Sse9I	AATT	4 cut(s)	106, 211, 435, 544
SsiI	CCGC	3 cut(s)	57, 66, 470
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	356, 366
TaiI	ACGT	3 cut(s)	156, 165, 346
TaqI	TCGA	1 cut(s)	439
TasI	AATT	4 cut(s)	106, 211, 435, 544
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	105, 195
Tru9I	TTAA	2 cut(s)	105, 195
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	68, 245
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.